Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Rhodobacter sphaeroides 2.4.1  

Data for CP000147  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000147.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000147_0038 CDS_45153-46187 42.8 1.1e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000147_0038 1/1 152 235 .. 1 94 [] 42.8 1.1e-13

Alignments of top-scoring domains:
CP000147_0038: domain 1 of 1, from 152 to 235: score 42.8, E = 1.1e-13
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRVKNN Q++ +L + r + +eev +++L+ + +R l+
CP000147_0 152 ELNHRVKNNIQLMVGLFSAAIRETGSEEV-----RDVLQAANQRLLA 193

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+ + Y++ ++ v +++le L++ L + g + L+ +
CP000147_0 194 VGAAQALMYETQQVSMVSSAAFLEALASTLSVTLGPEVR---LE--V 235


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 1 0|=
-13 2 0|==
-12 9 5|====*====
-11 30 15|==============*===============
-10 14 20|============== *
-9 12 17|============ *
-8 10 11|==========*
-7 2 6|== *
-6 3 3|==*
-5 0 2| *
-4 1 1|*
-3 0 0|
-2 0 0|
-1 1 0|=
> 0 2 -|==


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 18.3814
P(chi-square) = 0.001039

Total sequences searched: 87

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: