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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia sp. 383  

Data for CP000150  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000150.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000150_0486 CDS_574040-576385 76.7 6.2e-22 1
CP000150_0282 CDS_342378-343883 62.9 5.1e-18 1
CP000150_0848 CDS_988818-991166 56.5 3.4e-16 1
CP000150_1138 CDS_1312507-1314222 52.7 4.1e-15 1
CP000150_0298 CDS_363489-362350 49.0 4.6e-14 1
CP000150_0692 CDS_813380-811611 40.0 1.6e-11 1
CP000150_0577 CDS_674476-675885 37.5 8.2e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000150_0486 1/1 406 471 .. 1 87 [] 76.7 6.2e-22
CP000150_0282 1/1 270 338 .. 1 87 [] 62.9 5.1e-18
CP000150_0848 1/1 448 512 .. 1 87 [] 56.5 3.4e-16
CP000150_1138 1/1 197 262 .. 1 87 [] 52.7 4.1e-15
CP000150_0298 1/1 134 198 .. 1 87 [] 49.0 4.6e-14
CP000150_0692 1/1 326 427 .. 1 87 [] 40.0 1.6e-11
CP000150_0577 1/1 261 319 .. 1 87 [] 37.5 8.2e-11

Alignments of top-scoring domains:
CP000150_0486: domain 1 of 1, from 406 to 471: score 76.7, E = 6.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ + s+ q
CP000150_0 406 LKDELLATVSHELRTPLNVIYGWVEVLRN---------SGDSALQ-- 441

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l r++ d+Ld s + +g
CP000150_0 442 ----------QQAIDAIDRSARSLTRMVGDILDASSLATG 471

CP000150_0282: domain 1 of 1, from 270 to 338: score 62.9, E = 5.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ n+sH+LRTPLt++ gy+e+L ++ ++l e +r
CP000150_0 270 QRRELITNISHDLRTPLTSLHGYLETLSLKS-------DTLAETER- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l ++ rL + l +l+r+e+g
CP000150_0 309 ----------RRYLSIALAQSAKVGRLAQALFELARLESG 338

CP000150_0848: domain 1 of 1, from 448 to 512: score 56.5, E = 3.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k e l ++sH+LR PL++I gya+lLl ++ q
CP000150_0 448 QKIETLGYVSHDLRAPLSTINGYAKLLLQ----------GATHGQ-- 482

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r++++ l Li++lL ++++e +
CP000150_0 483 ----------ARLIRSIDRSIRYQLTLIDELLAFTKAELQ 512

CP000150_1138: domain 1 of 1, from 197 to 262: score 52.7, E = 4.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sH+LR+P++a+++++ +L+ +++++
CP000150_1 197 VKSSFLAAASHDLRQPVHALSLFVGALRH---------VPMPADG-- 232

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++i+++++ +++L +Ld+sr++ag
CP000150_1 233 ----------TLLVDRIDQSVNAMDALFTAILDISRLDAG 262

CP000150_0298: domain 1 of 1, from 134 to 198: score 49.0, E = 4.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++HELRTP+t++rg ++ L e + + +
CP000150_0 134 EQAFWNAAIAHELRTPVTVLRGRLQGLAE---------GVFQPGE-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++l +ae l rLi+dl+ +s +e+g
CP000150_0 170 -----------ALFRSLLTQAEGLTRLIEDLRVISLAESG 198

CP000150_0692: domain 1 of 1, from 326 to 427: score 40.0, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldk....v.lagdtels
+ ++++a+++HE+++P+ +++++ +L++++ ++ +v +a++++l+
CP000150_0 326 SIGQLAAGVAHEINNPIGFVSANLNTLKTWV-RslldViAAHEAALP 371

eeqrlpeLR..l...........edpeyreyletilreaerllrLindlL
+ p++R+ l ++ + + +e++ +++ ++ a r +r+++dl+
CP000150_0 372 QLD--PAARdaLaamgraadldyVRGEIETLIDESIDGALRVRRIVQDLR 419

dlsrieag<-*
d+sr +
CP000150_0 420 DFSRPASD 427

CP000150_0577: domain 1 of 1, from 261 to 319: score 37.5, E = 8.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fl ++sH+LRTPLt +r+ +e+L +
CP000150_0 261 GRARFLGAVSHDLRTPLTRLRLRTEMLPD------------------ 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++++ +++ ++++++ Ld r +
CP000150_0 290 ----------PEWRDRLRGDLDEMESMVRGALDAVRGVEV 319


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 0 0|
-13 12 0|===
-12 54 27|=====*=====
-11 107 143|====================== *
-10 202 265|========================================= *
-9 239 274|================================================ *
-8 215 205|========================================*==
-7 161 129|=========================*=======
-6 90 74|==============*===
-5 54 40|=======*===
-4 28 21|====*=
-3 15 11|==*
-2 12 6|=*=
-1 6 3|*=
0 2 1|*
1 1 0|=
> 2 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 78.3075
P(chi-square) = 1.077e-12

Total sequences searched: 1209

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: