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Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia sp. 383  

Data for CP000151  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000151.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000151_1262 CDS_1407649-1408968 93.4 3.2e-26 1
CP000151_2792 CDS_3110914-3112461 67.3 8.2e-19 1
CP000151_2423 CDS_2712181-2709338 62.2 2.3e-17 1
CP000151_2268 CDS_2537103-2535961 61.1 4.8e-17 1
CP000151_2759 CDS_3077376-3076030 60.3 7.8e-17 1
CP000151_1831 CDS_2054758-2056182 60.1 9.2e-17 1
CP000151_0074 CDS_90697-89213 55.9 1.4e-15 1
CP000151_1687 CDS_1894576-1893191 54.9 2.7e-15 1
CP000151_0034 CDS_50753-49320 53.1 8.4e-15 1
CP000151_2538 CDS_2834049-2832733 51.8 2e-14 1
CP000151_1306 CDS_1460634-1459258 49.3 1e-13 1
CP000151_1161 CDS_1302288-1303280 44.9 1.9e-12 1
CP000151_2255 CDS_2516268-2518784 42.8 7.2e-12 1
CP000151_2061 CDS_2303497-2304858 40.2 3.8e-11 1
CP000151_3283 CDS_3641287-3638873 38.6 1.1e-10 1
CP000151_3025 CDS_3370426-3368417 34.4 1.7e-09 1
CP000151_3256 CDS_3612014-3610596 27.6 1.5e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000151_1262 1/1 206 272 .. 1 87 [] 93.4 3.2e-26
CP000151_2792 1/1 281 346 .. 1 87 [] 67.3 8.2e-19
CP000151_2423 1/1 678 756 .. 1 87 [] 62.2 2.3e-17
CP000151_2268 1/1 152 220 .. 1 87 [] 61.1 4.8e-17
CP000151_2759 1/1 213 278 .. 1 87 [] 60.3 7.8e-17
CP000151_1831 1/1 228 293 .. 1 87 [] 60.1 9.2e-17
CP000151_0074 1/1 240 305 .. 1 87 [] 55.9 1.4e-15
CP000151_1687 1/1 231 296 .. 1 87 [] 54.9 2.7e-15
CP000151_0034 1/1 257 323 .. 1 87 [] 53.1 8.4e-15
CP000151_2538 1/1 220 278 .. 1 87 [] 51.8 2e-14
CP000151_1306 1/1 207 272 .. 1 87 [] 49.3 1e-13
CP000151_1161 1/1 126 184 .. 1 87 [] 44.9 1.9e-12
CP000151_2255 1/1 588 658 .. 1 87 [] 42.8 7.2e-12
CP000151_2061 1/1 234 293 .. 1 87 [] 40.2 3.8e-11
CP000151_3283 1/1 541 613 .. 1 87 [] 38.6 1.1e-10
CP000151_3025 1/1 420 482 .. 1 81 [. 34.4 1.7e-09
CP000151_3256 1/1 201 270 .. 1 87 [] 27.6 1.5e-07

Alignments of top-scoring domains:
CP000151_1262: domain 1 of 1, from 206 to 272: score 93.4, E = 3.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+++e +l+ee+r
CP000151_1 206 MRRDFVANVSHELKTPLTVLSGFLETMRE---------LPLNEEDR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++++a r+++++ dlL l+++e +
CP000151_1 243 ----------ARYLDMMEQQASRMRHIVTDLLVLAKLEGE 272

CP000151_2792: domain 1 of 1, from 281 to 346: score 67.3, E = 8.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ae +l+ ++ +++
CP000151_2 281 LQKRFIADAAHQMKTPLAGLRTQAEFALR---------HPVPPDV-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++e+ rL+ +lL l+r+e+
CP000151_2 317 ----------QRSLEQIATSSEQAARLVTQLLALARAENR 346

CP000151_2423: domain 1 of 1, from 678 to 756: score 62.2, E = 2.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLt+I g++++L + g+t++ ++
CP000151_2 678 LRNSLLSAISHDLRTPLTTIVGFSSMLAN-------GRTAARGGDAV 717

peLR....ledpeyreyletilreaerllrLindlLdlsrieag<-*
+ R +++ e+++ i++ea r+ ++ +lLd++r++ag
CP000151_2 718 AAERfaqrE-----GELVDAIHDEALRMTGIVTNLLDMARLQAG 756

CP000151_2268: domain 1 of 1, from 152 to 220: score 61.1, E = 4.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++nl+HE+++PL +Irg+a+lL+ el +e+ ++
CP000151_2 152 VNKQLIRNLAHEIKNPLGGIRGAAQLLEFEL-------GERERGEL- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
CP000151_2 191 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 220

CP000151_2759: domain 1 of 1, from 213 to 278: score 60.3, E = 7.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++ ++
CP000151_2 213 TQKAFVADAAHELRTPLAAVQIQAQLVAR---------AKDDASR-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ +++ + r rL ++lL l+r+e
CP000151_2 249 ----------REAVADLQDGVSRATRLTEQLLALARAEPD 278

CP000151_1831: domain 1 of 1, from 228 to 293: score 60.1, E = 9.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++HELR PLta+++ ae L e ++l+++
CP000151_1 228 AQRRFVADAAHELRSPLTAMSLQAERLAE---------ADLPDDA-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l ++ ++r ++Li +lL l+r+++
CP000151_1 264 ----------RARLTALRGGLDRSRHLIGQLLALARAQSA 293

CP000151_0074: domain 1 of 1, from 240 to 305: score 55.9, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLta++++ae + ++++ q+
CP000151_0 240 AQRKFIADAAHQLRTPLTAVKLHAEQAAV----------ARDPHQT- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +a+r rL n+lL l+r+e g
CP000151_0 276 ----------FAAVRELRAAADRAVRLSNQLLSLARAEPG 305

CP000151_1687: domain 1 of 1, from 231 to 296: score 54.9, E = 2.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+ +++HELRTPL+a+++ ae++l ++ +++
CP000151_1 231 TERRFIGDAAHELRTPLAALSAQAEVALQ---------ADSLADK-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ +er rL +lL+l+r++ag
CP000151_1 267 ----------NDALRRLATGVERSARLSGQLLELARLDAG 296

CP000151_0034: domain 1 of 1, from 257 to 323: score 53.1, E = 8.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+LRTP++++ + ++ +++ ++++++e
CP000151_0 257 TQRRFIADAAHQLRTPIAVLDTQIQYAQR--------RGHADPEL-- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++r+++ + + + lL l+ +ea
CP000151_0 294 ----------AAVLDSMQRSSRKMADVTDKLLLLAHAEAT 323

CP000151_2538: domain 1 of 1, from 220 to 278: score 51.8, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+LRTPL+ +r+ ae++ +
CP000151_2 220 DRAVMLAGVAHDLRTPLARMRLRAEMMDD------------------ 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + + r++++++++++++L ++ ++
CP000151_2 249 ----------VRLRDGVVRDVDSMSHIVDQFLVFAHGGSD 278

CP000151_1306: domain 1 of 1, from 207 to 272: score 49.3, E = 1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ ++sHEL+TPL+ + + + lL e ++ +
CP000151_1 207 QQREMMHGISHELKTPLARLEFGLALLAE---------PDETGRM-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++r+++ l++L+ +lL++ r+e+g
CP000151_1 243 ----------RERRDALRRDVRELDELVTELLTIGRLEQG 272

CP000151_1161: domain 1 of 1, from 126 to 184: score 44.9, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla++sH+LRTPLt +++ + +++
CP000151_1 126 ERNRFLAAVSHDLRTPLTRMKLRLRSAQD------------------ 154

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ e+++++++ + +L++ L + r e+
CP000151_1 155 ----------VELSERLRDDIDEMTQLLEATLSFLRNEEV 184

CP000151_2255: domain 1 of 1, from 588 to 658: score 42.8, E = 7.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PL+aI y++ l+ l +++ ++e++
CP000151_2 588 TMGEMASSIAHELNQPLAAINNYCSGTLA-----LVKSGRGTPETL- 628

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+ ++a r ++ +++++ + ++
CP000151_2 629 ----------QPALEKTAQQALRAGMIVKRIREFVKRSEP 658

CP000151_2061: domain 1 of 1, from 234 to 293: score 40.2, E = 3.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
CP000151_2 234 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++r+i + d++r +
CP000151_2 264 ----------QATKDAMVDDIEQMDRIIAAFIDYARPSQR 293

CP000151_3283: domain 1 of 1, from 541 to 613: score 38.6, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++l +++ +
CP000151_3 541 AWGEVARRLAHEIKNPLTPIQLSAERLQMKL------SDKLAPPD-A 580

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++ i +++ + r+++d+++++r
CP000151_3 581 DVL-------KRGATMIVNQVAAMKRMVDDFREYARTPPA 613

CP000151_3025: domain 1 of 1, from 420 to 482: score 34.4, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r +++ + +++e+ ++
CP000151_3 420 ALGQMAAGITHELNQPLAALRSFSDNTRV--------LLDRGEQAAA 458

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i +er+ ++ n+l +
CP000151_3 459 ----------RENLEAIAALTERMGKITNQLKLF 482

CP000151_3256: domain 1 of 1, from 201 to 270: score 27.6, E = 1.5e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +a+++HE+ TPL++I ++ae L++ ++++++ ++
CP000151_3 201 ALGVQAATVAHEMGTPLSTIAMLAEELRD---------AARDDPGLA 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + l++++++ + + + +l+ + + a
CP000151_3 239 RY--------EADLKVLEEQMTLCTSALARLRSRASAPAS 270


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 3 0|=
-13 33 2|*==
-12 125 76|======*====
-11 296 395|========================= *
-10 573 733|================================================ *
-9 672 757|======================================================== *
-8 591 566|===============================================*==
-7 446 357|=============================*========
-6 234 205|=================*==
-5 167 112|=========*====
-4 80 60|====*==
-3 45 31|==*=
-2 20 16|=*
-1 15 8|*=
0 7 4|*
1 4 2|*
2 3 1|*
3 1 0|=
> 4 19 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 170.6698
P(chi-square) = 8.589e-31

Total sequences searched: 3334

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: