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Classification of phyla is from NCBI page
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32 projects found  

1 accessions found for Sulfurimonas denitrificans DSM 1251  

Data for CP000153  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000153.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000153_0219 CDS_227419-223061 99.4 4.2e-28 1
CP000153_0416 CDS_416709-414019 98.8 6.2e-28 1
CP000153_0615 CDS_628272-625618 96.6 2.5e-27 1
CP000153_1919 CDS_2008143-2010236 89.6 2.4e-25 1
CP000153_1920 CDS_2010238-2012565 83.6 1.2e-23 1
CP000153_0316 CDS_320528-319119 68.4 2.6e-19 1
CP000153_1554 CDS_1633213-1631819 54.0 3e-15 1
CP000153_0530 CDS_532262-531549 51.5 1.6e-14 1
CP000153_0911 CDS_949458-950441 49.0 8e-14 1
CP000153_0281 CDS_300396-298816 39.6 3.7e-11 1
CP000153_1455 CDS_1531918-1530701 33.5 2e-09 1
CP000153_1362 CDS_1437706-1438821 30.9 1e-08 1
CP000153_0824 CDS_857118-858707 29.2 3.2e-08 1
CP000153_0882 CDS_917139-918134 28.1 6.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000153_0219 1/1 874 939 .. 1 87 [] 99.4 4.2e-28
CP000153_0416 1/1 381 446 .. 1 87 [] 98.8 6.2e-28
CP000153_0615 1/1 280 345 .. 1 87 [] 96.6 2.5e-27
CP000153_1919 1/1 472 539 .. 1 87 [] 89.6 2.4e-25
CP000153_1920 1/1 419 485 .. 1 87 [] 83.6 1.2e-23
CP000153_0316 1/1 239 305 .. 1 87 [] 68.4 2.6e-19
CP000153_1554 1/1 249 316 .. 1 87 [] 54.0 3e-15
CP000153_0530 1/1 17 80 .. 5 87 .] 51.5 1.6e-14
CP000153_0911 1/1 119 183 .. 1 87 [] 49.0 8e-14
CP000153_0281 1/1 289 362 .. 1 87 [] 39.6 3.7e-11
CP000153_1455 1/1 193 255 .. 1 87 [] 33.5 2e-09
CP000153_1362 1/1 163 219 .. 1 78 [. 30.9 1e-08
CP000153_0824 1/1 295 365 .. 1 87 [] 29.2 3.2e-08
CP000153_0882 1/1 128 189 .. 1 87 [] 28.1 6.4e-08

Alignments of top-scoring domains:
CP000153_0219: domain 1 of 1, from 874 to 939: score 99.4, E = 4.2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHE+RTP++aI+g++e+Lle ++l+e+q
CP000153_0 874 SKSEFLANMSHEIRTPMNAIIGFSEILLE---------SDLDEKQ-- 909

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++++ ll++ind+Ld+s+iea+
CP000153_0 910 ----------LHQLHKINSSSKMLLSIINDILDFSKIEAN 939

CP000153_0416: domain 1 of 1, from 381 to 446: score 98.8, E = 6.2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I g++elL++ + l eq
CP000153_0 381 AKSMFLANMSHEIRTPLNGIVGFTELLKD---------SGLQQEQ-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++i++++e ll++in++Ldls+ie++
CP000153_0 417 ----------SEFVDIIEKSSENLLEIINNILDLSKIESN 446

CP000153_0615: domain 1 of 1, from 280 to 345: score 96.6, E = 2.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl+n+sHE+RTPL+aI+g++ lL + ++ls ++
CP000153_0 280 AKEYFLSNMSHEIRTPLNAILGFVNLLID---------QDLSKQH-- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yle+il+++e ll++ind+Ld+s++++g
CP000153_0 316 ----------RKYLEIILNSGENLLSIINDILDFSKLRSG 345

CP000153_1919: domain 1 of 1, from 472 to 539: score 89.6, E = 2.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL+a++g++++L + ++++ e++
CP000153_1 472 AKSTFLATMSHELRTPLNAVIGFSQILMA--------KDDMPKEKI- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+i ++++ll+L+n++Ld+s+ie+g
CP000153_1 510 ----------RTFVEKINISGKHLLNLVNNILDFSKIESG 539

CP000153_1920: domain 1 of 1, from 419 to 485: score 83.6, E = 1.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ flan+sHELRTPL+aI+g++++L++ ++e +
CP000153_1 419 SKDMFLANMSHELRTPLNAIIGFSQILQT--------REEIPQNM-- 455

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i +++ ll+L+n +Ld++++eag
CP000153_1 456 ----------RSYIEKISIAGNNLLNLVNTILDFAKLEAG 485

CP000153_0316: domain 1 of 1, from 239 to 305: score 68.4, E = 2.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f ++sHEL+TPLt+Irg +e++l+ +e+s e+
CP000153_0 239 KITSFSQDASHELKTPLTVIRGEIEVALK---------QERSTEE-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l+ il+e+ ++++in+lL l++ ++
CP000153_0 275 ---------YKDILKDILEESINIQEIINQLLFLAKKDTS 305

CP000153_1554: domain 1 of 1, from 249 to 316: score 54.0, E = 3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++ l+++sHE+++P+++I+gya+++++ d ++s r
CP000153_1 249 QKNDILSAISHEFKNPIASIMGYAQTIQD--------DNNMSKSVR- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i + +e +++++++l ++e++
CP000153_1 287 ----------DKFLDKISSNGEKISKMLDRLTLSVKLENE 316

CP000153_0530: domain 1 of 1, from 17 to 80: score 51.5, E = 1.6e-14
*->flanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLR
+l +sH+LRTPL++I+g++ lLl + ++l+e+ r
CP000153_0 17 LLNIISHDLRTPLSTIIGTTNLLLSN--------SNLDEQGR----- 50

ledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ i ++ r+ rLi ++Ld +r+ +
CP000153_0 51 ------KNLLDDINYASIRMKRLITNILDSTRLSSL 80

CP000153_0911: domain 1 of 1, from 119 to 183: score 49.0, E = 8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+lsHE+R+P+ +I++++++L++ ++e
CP000153_0 119 IMGQMAAHLSHEIRNPIGSISLLSSTLKK---------RVMPENI-- 154

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e i++++ r++r+i L +s+ +
CP000153_0 155 -----------AIVEEIQKSVSRIERIIKATLMFSKGVHA 183

CP000153_0281: domain 1 of 1, from 289 to 362: score 39.6, E = 3.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a++ HE++TPLt I+g++el+ + + +e ++
CP000153_0 289 IIGKMAAGITHEINTPLTYIKGNLELMMH------DIKDLDDEIKQK 329

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L +e ++il+ ++r++++++ +++++ g
CP000153_0 330 NYL-------QEDSKVILEGVNRISSIVESMREMASQAKG 362

CP000153_1455: domain 1 of 1, from 193 to 255: score 33.5, E = 2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl++ HE +TPL++I++ +el l+ +++++
CP000153_1 193 SQKEFLRYTVHETNTPLSVILTSIELYLM-----------KNPKD-- 226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+ +++ + ++ +dl l + ++
CP000153_1 227 -----------RQLSKIEAATKNIFSIYDDLSYLVKKDHV 255

CP000153_1362: domain 1 of 1, from 163 to 219: score 30.9, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ HEL+TP+t+I++++e+L+ +++e+
CP000153_1 163 LLDNFIKETTHELNTPITTIMANIETLES---------KNCDEKS-- 198

peLRledpeyreyletilreaerllrLindl<-*
+ l +i+++a +++L +dl
CP000153_1 199 ----------LKKLLRIKSAAATISNLYEDL 219

CP000153_0824: domain 1 of 1, from 295 to 365: score 29.2, E = 3.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an++H+ R+PL+++++ ++ +++++ ++l++e +
CP000153_0 295 SLGEMIANIAHQWRQPLASLMMIIQGFETKME-----LGKLTPEIL- 335

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ + +e +++ i+d+ + +
CP000153_0 336 ----------KQKVDDATLLGENMSKTIEDFQNFFKPSRD 365

CP000153_0882: domain 1 of 1, from 128 to 189: score 28.1, E = 6.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+ + HEL+TP+taI++ ++ L++ ++ +e+
CP000153_0 128 KFDKFIKDSTHELNTPITAILMSIDRLKK---------ENIDEKI-- 163

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ +a+r +++ +d L++ +++
CP000153_0 164 -------------LSRVQISAKRVQKIYSD-LTYLLMDNK 189


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 20 1|*==
-12 99 47|=====*=======
-11 205 248|========================== *
-10 361 461|============================================== *
-9 422 476|===================================================== *
-8 379 356|============================================*===
-7 242 224|===========================*===
-6 147 129|================*==
-5 69 70|========*
-4 53 37|====*==
-3 32 20|==*=
-2 11 10|=*
-1 13 5|*=
0 4 2|*
1 3 1|*
2 1 0|=
3 0 0|
4 0 0|
5 2 0|=
6 1 0|=
7 1 0|=
8 1 0|=
9 2 0|=
10 2 0|=
11 2 0|=
> 12 21 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 118.5256
P(chi-square) = 3.588e-20

Total sequences searched: 2097

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: