Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

1 accessions found for Sulfurimonas denitrificans DSM 1251  

Data for CP000153  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000153.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000153_1007 CDS_1065640-1063760 49.4 3.8e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000153_1007 1/1 443 523 .. 1 94 [] 49.4 3.8e-14

Alignments of top-scoring domains:
CP000153_1007: domain 1 of 1, from 443 to 523: score 49.4, E = 3.8e-14
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E HRVKNNLQvISS+++L++ + e++ + L++ +n + +
CP000153_1 443 ELDHRVKNNLQVISSIVSLHSCQ---EDI-----SKSLEDIHNTISA 481

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
++l H++L++ e +t++++ Y++ L++nL+ s ++ ++ +
CP000153_1 482 ISLAHDKLHQDELHKTLEIKHYVSALLDNLLASSVLKIQKE-----I 523


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 3 0|=
-13 8 13|=*
-12 50 137|======= *
-11 360 383|============================================= *
-10 404 496|=================================================== *
-9 424 419|====================================================*
-8 307 281|===================================*===
-7 190 167|====================*===
-6 192 93|===========*============
-5 77 50|======*===
-4 38 26|===*=
-3 19 13|=*=
-2 12 7|*=
-1 5 3|*
0 5 1|*
> 1 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 211.6882
P(chi-square) = 5.253e-309

Total sequences searched: 2097

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: