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Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Erythrobacter litoralis HTCC2594  

Data for CP000157  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000157.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000157_1085 CDS_1128853-1127597 89.9 2.9e-25 1
CP000157_1009 CDS_1037192-1039534 83.3 2.1e-23 1
CP000157_0504 CDS_546643-545108 66.6 1.1e-18 1
CP000157_0426 CDS_468505-466916 60.6 5.9e-17 1
CP000157_0616 CDS_649478-647697 46.1 7.5e-13 1
CP000157_1254 CDS_1305348-1303129 44.9 1.7e-12 1
CP000157_1256 CDS_1307893-1306820 44.4 2.3e-12 1
CP000157_1547 CDS_1604678-1602234 43.2 4.9e-12 1
CP000157_2385 CDS_2405325-2406797 35.6 7e-10 1
CP000157_1311 CDS_1361325-1359913 31.0 1.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000157_1085 1/1 167 235 .. 1 87 [] 89.9 2.9e-25
CP000157_1009 1/1 559 627 .. 1 87 [] 83.3 2.1e-23
CP000157_0504 1/1 278 346 .. 1 87 [] 66.6 1.1e-18
CP000157_0426 1/1 297 362 .. 1 87 [] 60.6 5.9e-17
CP000157_0616 1/1 352 420 .. 1 87 [] 46.1 7.5e-13
CP000157_1254 1/1 504 575 .. 1 87 [] 44.9 1.7e-12
CP000157_1256 1/1 130 188 .. 7 87 .] 44.4 2.3e-12
CP000157_1547 1/1 433 499 .. 1 87 [] 43.2 4.9e-12
CP000157_2385 1/1 281 339 .. 1 87 [] 35.6 7e-10
CP000157_1311 1/1 253 309 .. 13 87 .] 31.0 1.5e-08

Alignments of top-scoring domains:
CP000157_1085: domain 1 of 1, from 167 to 235: score 89.9, E = 2.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+an+sHELRTPL++I+gyae+L + d+ ++
CP000157_1 167 AHTDFVANASHELRTPLASIIGYAETLSD------TPDQIDTPTA-- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ti+rea+rl++L++dl+ lsriea+
CP000157_1 206 ----------QKFIDTIYREARRLQSLVSDLMSLSRIEAE 235

CP000157_1009: domain 1 of 1, from 559 to 627: score 83.3, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++flan+s E+RTPLt+I g+aelL+ ++ +els++
CP000157_1 559 VKTRFLANMSYEFRTPLTSIGGFAELLESGVA------GELSPQG-- 597

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ il+++ rl ++++++Ldls+ eag
CP000157_1 598 ----------REYVQAILDSVGRLTEQVENVLDLSQSEAG 627

CP000157_0504: domain 1 of 1, from 278 to 346: score 66.6, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ la++sH+LRTP+t+I ++a++L+ +d l+ eqr
CP000157_0 278 LKDAILASVSHDLRTPITVIETAASALKS-------SDVSLDGEQR- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i ++ +rl+r n+lLd ri+ag
CP000157_0 317 ----------HKMLVSIVEQCHRLDRYTNQLLDVGRIQAG 346

CP000157_0426: domain 1 of 1, from 297 to 362: score 60.6, E = 5.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a+++HE+++PL+++r ++e L + e +e
CP000157_0 297 AVEHFAADVAHEIKNPLASLRSATESLSK---------VEDPELR-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ ++++r++rL+ ++ d sr +a+
CP000157_0 333 ----------SQLLDIATHDVRRIDRLVTEISDASRVDAE 362

CP000157_0616: domain 1 of 1, from 352 to 420: score 46.1, E = 7.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s+ ++ l HELRTP++aI+g+ae+++ +l+ ++ + e
CP000157_0 352 EESDRIRQLLHELRTPVNAIQGFAEVIQQQLF------GPTPNEY-- 390

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ti +a r+l+ ++l l+++eag
CP000157_0 391 ----------RALAATIAGDAARILAGFDELDRLAKLEAG 420

CP000157_1254: domain 1 of 1, from 504 to 575: score 44.9, E = 1.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ ++ ++HE+++PLt I++++e L++++ + + + ++
CP000157_1 504 AWSDVARRIAHEIKNPLTPIQLATERLKRRY-----RKQIEADGEL- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+++ti r++ l+ +++++ ++r+ +
CP000157_1 545 ---------FDELTSTIVRQVGALRTMVDEFSSFARLPKP 575

CP000157_1256: domain 1 of 1, from 130 to 188: score 44.4, E = 2.3e-12
*->anlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRle
+ l+HE+++PL+aIrg+ +lL + +l+e +
CP000157_1 130 SVLAHEIKNPLSAIRGAGQLLVR----------KLPESE-------- 158

dpeyreyletilreaerllrLindlLdlsrieag<-*
r + i +e++r+ rL++++ l +
CP000157_1 159 ----RPFALLIAKEVDRIARLVDRMQALGSRSSD 188

CP000157_1547: domain 1 of 1, from 433 to 499: score 43.2, E = 4.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+gy++l+l +++ ++ +
CP000157_1 433 AVGQLAGGVAHDFNNVLTAIIGYCDLMLL--------RHTPGDSD-- 469

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ il ++r +L ++lL +sr ++
CP000157_1 470 ----------YDDIQQILANSNRAASLTRQLLAFSRQQTL 499

CP000157_2385: domain 1 of 1, from 281 to 339: score 35.6, E = 7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ +l ++ H+L+TPL+a+r +e ++
CP000157_2 281 EKDVMLGAIGHDLKTPLAALRVRIESVED------------------ 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++e l + ++d+L l+ri+
CP000157_2 310 ----------ETQRARMAASIEDLTQSLDDILSLARIGRA 339

CP000157_1311: domain 1 of 1, from 253 to 309: score 31.0, E = 1.5e-08
*->LRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRledpeyre
LR+P++ I+++ae+++++l ++l +e +
CP000157_1 253 LRQPVSRIIANAETIRTKLA------GPLADEY------------SD 281

yletilreaerllrLindlLdlsrieag<-*
y i +++++ll+Li+dl dl+ ie++
CP000157_1 282 YAADIANAGQHLLSLIDDLADLEIIESE 309


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 14 0|==
-13 30 2|*==
-12 138 68|======*======
-11 274 356|========================= *
-10 486 662|============================================= *
-9 600 683|======================================================= *
-8 491 511|============================================= *
-7 412 322|=============================*========
-6 233 185|================*=====
-5 151 101|=========*====
-4 87 54|====*===
-3 35 28|==*=
-2 20 15|=*
-1 10 7|*
0 7 4|*
1 3 2|*
2 4 1|*
> 3 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 230.1393
P(chi-square) = 7.507e-313

Total sequences searched: 3011

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: