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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Erythrobacter litoralis HTCC2594  

Data for CP000157  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000157.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000157_2605 CDS_2622008-2623426 87.1 1e-24 1
CP000157_0836 CDS_862322-863419 50.4 2.7e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000157_2605 1/1 274 354 .. 1 94 [] 87.1 1e-24
CP000157_0836 1/1 172 223 .. 1 57 [. 50.4 2.7e-14

Alignments of top-scoring domains:
CP000157_2605: domain 1 of 1, from 274 to 354: score 87.1, E = 1e-24
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E++HRVKN+LQ+I+SLL LQ+r ++++ + LrE+++RV +
CP000157_2 274 EVNHRVKNSLQIITSLLTLQSRTADEQLA------VPLREAIGRVET 314

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +HE+LY + + d+v++ Yle L+ + s g++ + +
CP000157_2 315 VARVHERLYSTSSHDRVEITGYLEDLLTHVVGSLGGREG-------V 354

CP000157_0836: domain 1 of 1, from 172 to 223: score 50.4, E = 2.7e-14
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+ HRVKN+L+ I ++L++ ar++++e + L ++ R++S
CP000157_0 172 EVDHRVKNSLASIGAMLSMKARRTSNETL-----KMELDDASTRIRS 213

mAliHEeLYk<-*
+ +H eL++
CP000157_0 214 LSSLHAELHE 223


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 11 0|=
-14 18 0|==
-13 62 18|=*===
-12 197 197|=============*
-11 880 550|====================================*======================
-10 658 712|============================================ *
-9 458 601|=============================== *
-8 327 403|====================== *
-7 149 239|========== *
-6 135 133|========*
-5 46 71|====*
-4 32 38|==*
-3 14 19|=*
-2 7 10|*
-1 5 5|*
0 2 2|*
1 3 1|*
2 1 0|=
3 1 0|=
> 4 5 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 396.5910
P(chi-square) = 0

Total sequences searched: 3011

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: