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Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Hyphomonas neptunium ATCC 15444  

Data for CP000158  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000158.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000158_1487 CDS_1544024-1541190 93.3 3.7e-26 1
CP000158_2854 CDS_3067335-3064870 87.7 1.4e-24 1
CP000158_1259 CDS_1305959-1303992 87.4 1.7e-24 1
CP000158_0539 CDS_538066-539697 87.2 2e-24 1
CP000158_0290 CDS_284928-286418 86.3 3.6e-24 1
CP000158_3000 CDS_3230381-3229002 84.1 1.5e-23 1
CP000158_0395 CDS_393820-396267 71.7 4.8e-20 1
CP000158_1387 CDS_1433429-1431795 71.4 5.7e-20 1
CP000158_0740 CDS_754650-756269 68.9 2.9e-19 1
CP000158_2151 CDS_2283140-2284495 66.5 1.4e-18 1
CP000158_3036 CDS_3270446-3271741 51.9 1.9e-14 1
CP000158_1975 CDS_2087991-2085712 51.3 3e-14 1
CP000158_1977 CDS_2090534-2089476 48.1 2.3e-13 1
CP000158_3085 CDS_3324686-3322005 45.2 1.5e-12 1
CP000158_1295 CDS_1345420-1343867 44.1 3.1e-12 1
CP000158_1218 CDS_1254562-1255728 40.7 3e-11 1
CP000158_3337 CDS_3543239-3544606 36.7 4.1e-10 1
CP000158_0503 CDS_498883-501486 27.5 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000158_1487 1/1 200 265 .. 1 87 [] 93.3 3.7e-26
CP000158_2854 1/1 581 650 .. 1 87 [] 87.7 1.4e-24
CP000158_1259 1/1 269 334 .. 1 87 [] 87.4 1.7e-24
CP000158_0539 1/1 165 230 .. 1 87 [] 87.2 2e-24
CP000158_0290 1/1 14 79 .. 1 87 [] 86.3 3.6e-24
CP000158_3000 1/1 200 267 .. 1 87 [] 84.1 1.5e-23
CP000158_0395 1/1 575 643 .. 1 87 [] 71.7 4.8e-20
CP000158_1387 1/1 315 380 .. 1 87 [] 71.4 5.7e-20
CP000158_0740 1/1 306 374 .. 1 87 [] 68.9 2.9e-19
CP000158_2151 1/1 233 299 .. 1 87 [] 66.5 1.4e-18
CP000158_3036 1/1 231 289 .. 1 87 [] 51.9 1.9e-14
CP000158_1975 1/1 507 578 .. 1 87 [] 51.3 3e-14
CP000158_1977 1/1 134 188 .. 11 87 .] 48.1 2.3e-13
CP000158_3085 1/1 518 583 .. 1 87 [] 45.2 1.5e-12
CP000158_1295 1/1 300 359 .. 8 87 .] 44.1 3.1e-12
CP000158_1218 1/1 160 231 .. 1 87 [] 40.7 3e-11
CP000158_3337 1/1 227 288 .. 1 87 [] 36.7 4.1e-10
CP000158_0503 1/1 482 548 .. 1 87 [] 27.5 1.6e-07

Alignments of top-scoring domains:
CP000158_1487: domain 1 of 1, from 200 to 265: score 93.3, E = 3.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++aI+g+++l+ + t+ls++q
CP000158_1 200 AKSLFLASMSHEIRTPMNAILGFCHLIAR---------TDLSPKQ-- 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i +++ +llrLind+Ld+s+ eag
CP000158_1 236 ----------KDHVSKINDAGVSLLRLINDILDFSKNEAG 265

CP000158_2854: domain 1 of 1, from 581 to 650: score 87.7, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+a++g++e++ +el ++l+++
CP000158_2 581 AKSAFLANMSHELRTPLNAVIGFSEIMTNELA------GPLGDPS-- 619

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + il ++++ll++ind+Ld+++ieag
CP000158_2 620 ---------YKEYAKDILMSGQHLLDMINDILDMAKIEAG 650

CP000158_1259: domain 1 of 1, from 269 to 334: score 87.4, E = 1.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTPL++++g+a++L ++l+e q
CP000158_1 269 LKSEFLANMSHEIRTPLNGVLGMAQVLAH---------GKLTEAQ-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +il++++ l L+nd+Ldls+ieag
CP000158_1 305 ----------AEQVGVILDSGNTLMVLLNDILDLSKIEAG 334

CP000158_0539: domain 1 of 1, from 165 to 230: score 87.2, E = 2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+fla + HE+RTPLt+I+g a+lL++ + + e
CP000158_0 165 GRSRFLAFIGHEIRTPLTGILGVADLLKD---------QSVTNES-- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ eti +++++l+rL+ndlLdlsr+eag
CP000158_0 201 ----------RRLAETISNSGQHLERLLNDLLDLSRLEAG 230

CP000158_0290: domain 1 of 1, from 14 to 79: score 86.3, E = 3.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ fla++sHE+RTPL++I+g+++lLle tels+ q
CP000158_0 14 PEQTFLATASHEIRTPLNGILGTVSLLLE---------TELSPAQ-- 49

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey eti+ ++ rll+L+n++Ld++r++a
CP000158_0 50 ----------REYAETIRLSGGRLLDLLNNVLDYARLDAS 79

CP000158_3000: domain 1 of 1, from 200 to 267: score 84.1, E = 1.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +flan+sHELRTPLtaI+g++e+++ +++ +++
CP000158_3 200 ARADFLANASHELRTPLTAISGFIETMRG---------PAREDKDS- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++l ++ e+er++rLi dlL lsrie+
CP000158_3 237 ---------WDRFLGIMAGESERMSRLIADLLSLSRIESA 267

CP000158_0395: domain 1 of 1, from 575 to 643: score 71.7, E = 4.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef++n+s +LR PLt+I gyaelL++ ++ ++l+e q
CP000158_0 575 LKTEFVRNVSYQLRSPLTTIFGYAELLET------QRNGPLTERQ-- 613

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ il+++++l++Li+++Ldl+ ieag
CP000158_0 614 ----------TDHVRAILSASDHLNKLIENILDLALIEAG 643

CP000158_1387: domain 1 of 1, from 315 to 380: score 71.4, E = 5.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HEL++PLt+Ir ++e+L++ ++++ +
CP000158_1 315 ANEQFAADVAHELKNPLTSIRSAVETLER----------VQDPDAA- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i ++++rl+rLi d+ sr+ea+
CP000158_1 351 ----------ARLRAVIASDVKRLDRLITDISNASRLEAE 380

CP000158_0740: domain 1 of 1, from 306 to 374: score 68.9, E = 2.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+l H+LRTPL+aI+gyae++++el ++++e
CP000158_0 306 KRTAFFASLGHDLRTPLHAILGYAEIMQAELM------GPMPEVY-- 344

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ++i++++ ll L++d+Ldl+r eag
CP000158_0 345 ----------ADYPSIIHESGTDLLLLVDDILDLARSEAG 374

CP000158_2151: domain 1 of 1, from 233 to 299: score 66.5, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s f a+++HELRTP++ ++g ++++l +s+ ++
CP000158_2 233 KLSAFNADVAHELRTPVSNLIGETQVALS---------RQRSASDL- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++ l+e+erl ++ind+L l+r+++g
CP000158_2 270 ----------EAVLQSNLEELERLKSIINDMLFLARADEG 299

CP000158_3036: domain 1 of 1, from 231 to 289: score 51.9, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +++++ l+ e
CP000158_3 231 QRTAMLAGVSHDLRTPLTRLKLTLALMPE------------------ 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ ++++++ + ++++ L ++r e+g
CP000158_3 260 ----------SDDLKAARSDLNDMAMMLDEYLAFARGEEG 289

CP000158_1975: domain 1 of 1, from 507 to 578: score 51.3, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+R+PLt I++ +e L++++ + + ++
CP000158_1 507 AWRDVARRIAHEIRNPLTPIMLSTERLKRRY----GPKIDDPDGV-- 547

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +etilr ++ + r+++++ ++r+ +
CP000158_1 548 ---------FDRCIETILRKVDDIARMVEEFSSFARMPKP 578

CP000158_1977: domain 1 of 1, from 134 to 188: score 48.1, E = 2.3e-13
*->HELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRledpey
HE ++PL++I+g+a+lL++ + + q
CP000158_1 134 HEVKNPLAGIIGAAQLLER----------QAHAGQ------------ 158

reyletilreaerllrLindlLdlsrieag<-*
e+l++i++ea+r++rL+n+l ++ a+
CP000158_1 159 SELLDIIKDEARRIERLVNRLSAFELFSAP 188

CP000158_3085: domain 1 of 1, from 518 to 583: score 45.2, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g++++L++ l+++ +
CP000158_3 518 AIGQLTGGVAHDFNNLLTVILGNSDVLRD----------RLDDPVL- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e i+ +a r ++L ++lL ++r +
CP000158_3 554 ----------RRMAELIHLAATRGSDLTRRLLAFARRQPL 583

CP000158_1295: domain 1 of 1, from 300 to 359: score 44.1, E = 3.1e-12
*->nlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRled
+++H+LR PLt +r +el+l +lsee +
CP000158_1 300 AIAHDLRSPLTRLRNRLELALS---------KPLSEEAA-------- 329

peyreyletilreaerllrLindlLdlsrieag<-*
e l t l+e++r l+ n +L l+r++ag
CP000158_1 330 ---NETLGTTLSEVDRVLDTFNAILRLARLDAG 359

CP000158_1218: domain 1 of 1, from 160 to 231: score 40.7, E = 3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++++l+HEL++PLta+ y+e+ ++ + +++++
CP000158_1 160 AVGTMASALAHELNQPLTAVANYLEASRD--------LLDSPDPEMK 198

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L re+l + r+a r ++++ l+ + ++
CP000158_1 199 DVL-------REALTEAARQAVRAGEIVRKLRSYVSRGEV 231

CP000158_3337: domain 1 of 1, from 227 to 288: score 36.7, E = 4.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ + a+ +HEL TPL++I + a L ++ +++ +
CP000158_3 227 ALGAMSAMTAHELGTPLATIHLVANELVQ---------QTSPDDPH- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ i ++a+r++++++ + ea
CP000158_3 264 ----------AEDFRLIAEQADRCRSILSAI-----REAR 288

CP000158_0503: domain 1 of 1, from 482 to 548: score 27.5, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ ++H++++ L +I+++ e L + +++ +++
CP000158_0 482 SIGQLAGVVAHDFNNVLQGIIFNYEELMT--------RHPVGDPS-- 518

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl++i++ + r ++L++ lL ++r+++
CP000158_0 519 ----------YEYLQSIHEFSSRARELVRMLLAYARAQTF 548


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 7 0|=
-13 36 2|*==
-12 161 80|======*=======
-11 351 415|============================== *
-10 619 770|==================================================== *
-9 661 795|======================================================== *
-8 631 595|=================================================*===
-7 428 375|===============================*====
-6 300 216|=================*=======
-5 127 118|=========*=
-4 75 63|=====*=
-3 47 33|==*=
-2 19 17|=*
-1 11 9|*
0 3 4|*
1 5 2|*
> 2 24 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 194.9679
P(chi-square) = 8.221e-36

Total sequences searched: 3505

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: