Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Hyphomonas neptunium ATCC 15444  

Data for CP000158  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000158.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000158_2300 CDS_2444651-2443047 59.6 7.9e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000158_2300 1/1 342 401 .. 1 65 [. 59.6 7.9e-17

Alignments of top-scoring domains:
CP000158_2300: domain 1 of 1, from 342 to 401: score 59.6, E = 7.9e-17
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQv+ S+L LQ r +e+ + aL+ + +RV+
CP000158_2 342 EVHHRVKNNLQVMLSMLKLQGRGEALPET-----QSALKVAAHRVAM 383

mAliHEeLYksedldtvd<-*
mA +H L +dldtv+
CP000158_2 384 MAAVHHTLLNEGDLDTVE 401


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 12 0|=
-14 23 0|==
-13 53 21|=*==
-12 206 230|=============*
-11 959 641|=====================================*===================
-10 791 829|=============================================== *
-9 544 700|================================ *
-8 412 470|========================= *
-7 211 279|============= *
-6 176 155|=========*=
-5 55 83|====*
-4 25 44|==*
-3 17 23|=*
-2 7 12|*
-1 6 6|*
0 1 3|*
1 0 1|*
2 3 0|=
3 1 0|=
4 0 0|
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 289.7406
P(chi-square) = 0

Total sequences searched: 3505

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: