Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

2 accessions found for Salinibacter ruber DSM 13855  

Data for CP000159  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000159.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000159_1417 CDS_1806352-1804895 153.4 1.3e-43 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000159_1417 1/1 295 383 .. 1 94 [] 153.4 1.3e-43

Alignments of top-scoring domains:
CP000159_1417: domain 1 of 1, from 295 to 383: score 153.4, E = 1.3e-43
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQvISSLL+ Qar +++++v + + E+q+R++S
CP000159_1 295 EIHHRVKNNLQVISSLLNAQARDVESPAV-----EDRFTETQDRIRS 336

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
mA iHE+LY+++dl++++f++Yle L+++Lf+s++ +g L++D
CP000159_1 337 MASIHEQLYQTDDLSRIEFDAYLEGLLDDLFRSHRTAHIGRTLEADA 383


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 4 0|=
-14 7 0|=
-13 29 17|=*=
-12 159 183|============= *
-11 711 512|=======================================*===============
-10 602 662|=============================================== *
-9 452 559|=================================== *
-8 391 375|============================*==
-7 159 223|============= *
-6 144 124|=========*==
-5 68 66|=====*
-4 38 35|==*
-3 20 18|=*
-2 6 9|*
-1 7 5|*
0 1 2|*
1 1 1|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 139.0052
P(chi-square) = 9.509e-24

Total sequences searched: 2801

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: