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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

2 accessions found for Salinibacter ruber DSM 13855  

Data for CP000159  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000159.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000159_0658 CDS_884329-883061 47.3 8.2e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000159_0658 1/1 209 276 .. 1 70 [] 47.3 8.2e-14

Alignments of top-scoring domains:
CP000159_0658: domain 1 of 1, from 209 to 276: score 47.3, E = 8.2e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI ++LHD++gQ+L++i l ++ ++r+l +++ e ++ ++ei
CP000159_0 209 ERRRIGQDLHDGLGQMLTGIGLLSQDLARQL--EEEGHERAADMAEI 253

relarealaevRrllgdLRpaal<-*
++++ea + +R+l ++L p +
CP000159_0 254 TDHVKEADQYARDLSHGLIPVDV 276


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 4 0|=
-13 14 0|==
-12 38 31|===*=
-11 76 256|========== *
-10 237 595|============================== *
-9 420 676|===================================================== *
-8 422 521|===================================================== *
-7 419 327|========================================*============
-6 349 185|=======================*====================
-5 333 99|============*=============================
-4 186 51|======*=================
-3 102 26|===*=========
-2 75 13|=*========
-1 41 6|*=====
0 28 3|*===
1 21 1|*==
2 10 0|==
3 8 0|=
4 6 0|=
5 4 0|=
6 1 0|=
7 2 0|=
8 0 0|
9 1 0|=
> 10 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2179.2451
P(chi-square) = 0

Total sequences searched: 2801

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: