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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

2 accessions found for Rhodospirillum rubrum ATCC 11170  

Data for CP000230  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000230.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000230_2028 CDS_2346075-2348675 94.8 1.5e-26 1
CP000230_3481 CDS_4021258-4018133 93.8 2.9e-26 1
CP000230_3203 CDS_3703369-3705705 92.7 5.7e-26 1
CP000230_3532 CDS_4079235-4080671 88.4 9.7e-25 1
CP000230_2103 CDS_2446295-2443521 87.6 1.6e-24 1
CP000230_0327 CDS_398582-400444 87.1 2.3e-24 1
CP000230_0066 CDS_76073-78394 85.2 7.9e-24 1
CP000230_2356 CDS_2752823-2748141 83.8 1.9e-23 1
CP000230_1273 CDS_1502001-1504436 76.9 1.8e-21 1
CP000230_3432 CDS_3967303-3964898 75.9 3.3e-21 1
CP000230_2401 CDS_2802329-2806234 72.6 3e-20 1
CP000230_1380 CDS_1632653-1634506 69.5 2.2e-19 1
CP000230_3412 CDS_3940024-3941718 68.2 5.2e-19 1
CP000230_1154 CDS_1372885-1375578 66.4 1.6e-18 1
CP000230_1672 CDS_1966637-1967737 57.4 5.8e-16 1
CP000230_1879 CDS_2182500-2183540 55.1 2.7e-15 1
CP000230_3745 CDS_4307116-4309134 54.8 3.2e-15 1
CP000230_0552 CDS_655036-653714 53.7 6.5e-15 1
CP000230_2927 CDS_3383040-3380587 53.6 7.1e-15 1
CP000230_1674 CDS_1969288-1971570 50.7 4.8e-14 1
CP000230_2221 CDS_2584937-2586343 46.4 7.8e-13 1
CP000230_2812 CDS_3255854-3253365 46.2 9e-13 1
CP000230_2053 CDS_2379699-2381198 44.6 2.5e-12 1
CP000230_3029 CDS_3499877-3503080 40.5 3.6e-11 1
CP000230_1432 CDS_1699348-1697495 40.4 3.9e-11 1
CP000230_2598 CDS_3032540-3030546 40.1 4.9e-11 1
CP000230_1870 CDS_2172205-2173710 39.2 8.4e-11 1
CP000230_2717 CDS_3150536-3153040 38.8 1.1e-10 1
CP000230_2922 CDS_3375287-3376345 38.5 1.3e-10 1
CP000230_3286 CDS_3791931-3793883 37.8 2.1e-10 1
CP000230_1496 CDS_1771039-1775490 33.5 3.5e-09 1
CP000230_2906 CDS_3356837-3358438 31.3 1.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000230_2028 1/1 498 563 .. 1 87 [] 94.8 1.5e-26
CP000230_3481 1/1 504 569 .. 1 87 [] 93.8 2.9e-26
CP000230_3203 1/1 546 615 .. 1 87 [] 92.7 5.7e-26
CP000230_3532 1/1 230 297 .. 1 87 [] 88.4 9.7e-25
CP000230_2103 1/1 400 465 .. 1 87 [] 87.6 1.6e-24
CP000230_0327 1/1 380 448 .. 1 87 [] 87.1 2.3e-24
CP000230_0066 1/1 540 609 .. 1 87 [] 85.2 7.9e-24
CP000230_2356 1/1 895 960 .. 1 87 [] 83.8 1.9e-23
CP000230_1273 1/1 297 362 .. 1 87 [] 76.9 1.8e-21
CP000230_3432 1/1 576 644 .. 1 87 [] 75.9 3.3e-21
CP000230_2401 1/1 214 280 .. 1 87 [] 72.6 3e-20
CP000230_1380 1/1 398 463 .. 1 87 [] 69.5 2.2e-19
CP000230_3412 1/1 332 397 .. 1 87 [] 68.2 5.2e-19
CP000230_1154 1/1 662 730 .. 1 87 [] 66.4 1.6e-18
CP000230_1672 1/1 141 205 .. 1 87 [] 57.4 5.8e-16
CP000230_1879 1/1 107 176 .. 1 87 [] 55.1 2.7e-15
CP000230_3745 1/1 278 343 .. 1 87 [] 54.8 3.2e-15
CP000230_0552 1/1 198 266 .. 1 87 [] 53.7 6.5e-15
CP000230_2927 1/1 440 506 .. 1 87 [] 53.6 7.1e-15
CP000230_1674 1/1 508 579 .. 1 87 [] 50.7 4.8e-14
CP000230_2221 1/1 265 323 .. 1 87 [] 46.4 7.8e-13
CP000230_2812 1/1 438 504 .. 1 87 [] 46.2 9e-13
CP000230_2053 1/1 274 339 .. 1 87 [] 44.6 2.5e-12
CP000230_3029 1/1 534 605 .. 1 87 [] 40.5 3.6e-11
CP000230_1432 1/1 399 467 .. 1 87 [] 40.4 3.9e-11
CP000230_2598 1/1 430 498 .. 1 87 [] 40.1 4.9e-11
CP000230_1870 1/1 243 311 .. 1 87 [] 39.2 8.4e-11
CP000230_2717 1/1 464 530 .. 1 87 [] 38.8 1.1e-10
CP000230_2922 1/1 137 201 .. 1 87 [] 38.5 1.3e-10
CP000230_3286 1/1 416 484 .. 1 87 [] 37.8 2.1e-10
CP000230_1496 1/1 885 950 .. 1 87 [] 33.5 3.5e-09
CP000230_2906 1/1 307 371 .. 1 87 [] 31.3 1.4e-08

Alignments of top-scoring domains:
CP000230_2028: domain 1 of 1, from 498 to 563: score 94.8, E = 1.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTPL++++g+a+lL + t+l++eq
CP000230_2 498 AKSDFLAVMSHELRTPLNGVLGMADLLCD---------TPLDAEQ-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti +ae ll +ind+Ldls+ieag
CP000230_2 534 ----------RRYTRTIAISAEALLVIINDILDLSKIEAG 563

CP000230_3481: domain 1 of 1, from 504 to 569: score 93.8, E = 2.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak efla++sHE+RTP++a++g++ lLl+ ++l + q+
CP000230_3 504 AKAEFLATMSHEIRTPMNAVIGMTGLLLD---------GPLEPRQI- 540

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y +ti+r++e+ll Lind+Ld+sri++g
CP000230_3 541 -----------DYARTIQRSGEHLLGLINDILDFSRIDTG 569

CP000230_3203: domain 1 of 1, from 546 to 615: score 92.7, E = 5.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl n+sHELRTPL+aI+g++e+L e++ ++l++ q
CP000230_3 546 AKSEFLTNMSHELRTPLNAIIGFSEVLHSEMF------GPLGATQ-- 584

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +y +i++++++ll+ ind+Ld srieag
CP000230_3 585 ---------YLDYAASIRDSGRHLLDVINDILDVSRIEAG 615

CP000230_3532: domain 1 of 1, from 230 to 297: score 88.4, E = 9.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL++++g++e+L + +++ ++e r
CP000230_3 230 MRADFVANASHELRTPLSSLIGFTETLST--------SAKNDPEAR- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++l++++r++rLi+dlL lsrie +
CP000230_3 268 ----------ERFLAIMLEQGRRMQRLIEDLLSLSRIEME 297

CP000230_2103: domain 1 of 1, from 400 to 465: score 87.6, E = 1.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+fla +sHE+RTP+t+I+g+ +lLl+ + l+eeq
CP000230_2 400 AASQFLAVMSHEIRTPMTGILGMGDLLLT---------SGLNEEQ-- 435

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +t+ r+a+ ll L++d+Ld+s+ieag
CP000230_2 436 ----------EKYGRTLMRSARTLLGLLDDVLDFSKIEAG 465

CP000230_0327: domain 1 of 1, from 380 to 448: score 87.1, E = 2.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHELRTPL+aI+g++++L + ++ ++l + q
CP000230_0 380 AKTLFLANMSHELRTPLNAIIGFSDMLAN------GIHGALADRQ-- 418

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + i +a +ll+Lind+Ld ++ie+g
CP000230_0 419 ----------QDYARDINLSALHLLDLINDILDVAKIESG 448

CP000230_0066: domain 1 of 1, from 540 to 609: score 85.2, E = 7.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++++ + +++ + l+ +
CP000230_0 540 AKSEFLANMSHELRTPLNAIIGFSDITRHQMF------GRLDNPV-- 578

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +y + i++++ +ll++i+d+Ldl++ieag
CP000230_0 579 ---------YVDYARNIYDSGTHLLEIISDILDLAKIEAG 609

CP000230_2356: domain 1 of 1, from 895 to 960: score 83.8, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++flan+sHE+RTP++aI+g++ l ++ t+l++ q
CP000230_2 895 VKGQFLANMSHEIRTPMNAILGMLTLVQR---------TALTPHQ-- 930

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ +++++a +ll L+nd+Ld+s+ieag
CP000230_2 931 ----------ADYVCKAHSAAGSLLGLLNDILDFSKIEAG 960

CP000230_1273: domain 1 of 1, from 297 to 362: score 76.9, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++I+g++ l+++ el +e +
CP000230_1 297 AKSTFLATMSHEIRTPINGILGLSTLMRD----------ELRDERL- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + i +ae ll+++nd+Ld+++ieag
CP000230_1 333 ----------RHHADAIALSAEMLLSMVNDVLDFTKIEAG 362

CP000230_3432: domain 1 of 1, from 576 to 644: score 75.9, E = 3.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+an+s ELRTPLt+I+g++e+L ++ +el+ q
CP000230_3 576 MKSEFIANVSYELRTPLTTISGFSEILSGAYY------GELNTRQ-- 614

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey e+i + +++ rLi+++ dl ++ag
CP000230_3 615 ----------REYAEVITETSRQVVRLIDEITDLVSMQAG 644

CP000230_2401: domain 1 of 1, from 214 to 280: score 72.6, E = 3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+sHELRTPLt I+g + +e d++l + +
CP000230_2 214 IKTQFFANVSHELRTPLTLILGPVTSRQE--------DPTLAPAE-- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ + r a+ llr +ndlLd++++eag
CP000230_2 251 ----------KRVLDMVARNARLLLRHVNDLLDIAKLEAG 280

CP000230_1380: domain 1 of 1, from 398 to 463: score 69.5, E = 2.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+R+PLt+Irg+++ L e +s+++
CP000230_1 398 ALGELTAGIAHEIRNPLTSIRGFVQYLME----------CASPKE-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ y i+r++++l+++i +lL + r +a+
CP000230_1 433 ---------WQHYGPLIIRQVDSLNHIITELLAFGRPRAP 463

CP000230_3412: domain 1 of 1, from 332 to 397: score 68.2, E = 5.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HE+++PLt++r ++e+ + + + +q
CP000230_3 332 AIERFAADVAHEIKNPLTSLRSAVETVAR---------IDDPNQQ-- 367

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i ++++rl+rLi d+ d sr++a+
CP000230_3 368 ----------KRLMAVIVDDVQRLNRLITDISDASRLDAE 397

CP000230_1154: domain 1 of 1, from 662 to 730: score 66.4, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPL +I+g a++L +++ ++ls++
CP000230_1 662 LRTALLSSLSHDLRTPLVSIMGSASALVNYQ-------DTLSDDAE- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ti++eaerl+r +++lLd+++++ag
CP000230_1 701 ----------RELALTIQDEAERLNRFVQNLLDMTKLGAG 730

CP000230_1672: domain 1 of 1, from 141 to 205: score 57.4, E = 5.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a l+HE ++PL++Irg+a+lL++ +l+ee+
CP000230_1 141 SVTAMAALLAHEVKNPLSGIRGAAQLLEA----------NLPEED-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i++e++r+ +L++++ +s
CP000230_1 176 ----------HQLVRLIIDETDRIVALVDRMEVFSDNMPL 205

CP000230_1879: domain 1 of 1, from 107 to 176: score 55.1, E = 2.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl++l ELRTPL+aI+gyae + la+ +l+e+
CP000230_1 107 AKNHFLSHLNQELRTPLNAISGYAEKIAQ-----LAETRPLPEQV-- 146

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+r+++ l++Li++lLdls + g
CP000230_1 147 ----------TQGVGQIRRASDELRQLIDELLDLSAVGDG 176

CP000230_3745: domain 1 of 1, from 278 to 343: score 54.8, E = 3.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sH+LR+PL a+ +++++L e ++
CP000230_3 278 AKTRFLAAASHDLRQPLQALNMFISVLAG---------RENDPWR-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +i++ a+ l +L++ lLd+s+++ag
CP000230_3 314 ----------AAIIGKIEKTADALTALLDTLLDISKLDAG 343

CP000230_0552: domain 1 of 1, from 198 to 266: score 53.7, E = 6.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+L PL +rgy++l++++l + l++e+
CP000230_0 198 ELESFAYGISHDLQEPLRMVRGYLQLIRRRLG------PGLDSET-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y +++ a r+ +indlLd+sri ++
CP000230_0 237 ----------RDYMAFAEDGATRMGTMINDLLDYSRITTQ 266

CP000230_2927: domain 1 of 1, from 440 to 506: score 53.6, E = 7.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+P+ a+ y+ lL + + + + +
CP000230_2 440 SKSRFLAAASHDLRQPMQALNIYVGLLTR---------QVREQPRA- 476

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++ ++++ l +L++ lLd s+++ag
CP000230_2 477 ----------YELVQRVGQSVNALGDLLDSLLDVSKLDAG 506

CP000230_1674: domain 1 of 1, from 508 to 579: score 50.7, E = 4.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ ++ + ++e+
CP000230_1 508 AWADVARRIAHEIKNPLTPIQLSAERLKRKY----LKQITDDPET-- 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +eti+r + + ++++++ ++r+ a+
CP000230_1 549 ---------FARCTETIIRHVGDIGQMVDEFSAFARMPAP 579

CP000230_2221: domain 1 of 1, from 265 to 323: score 46.4, E = 7.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+la++sH+LRTPLt +r+ + l++ ee
CP000230_2 265 QRTEMLAGVSHDLRTPLTRMRLQLALMEG-------------EEG-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ ++r+++ L ++r e
CP000230_2 297 -------------TVELTEDIAEMERMVEGYLAFARGEGT 323

CP000230_2812: domain 1 of 1, from 438 to 504: score 46.2, E = 9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lta++g+++lLl ++ +++
CP000230_2 438 AMGQLAGGVAHDFNNLLTAMIGFSDLLLQ--------RHGIGDPS-- 474

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +L+++lL +sr +
CP000230_2 475 ----------FADIMQIKQNANRAANLVRQLLAFSRRQPL 504

CP000230_2053: domain 1 of 1, from 274 to 339: score 44.6, E = 2.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL + ++ya +L + ++ ++
CP000230_2 274 SKSRFLAAAGHDLMQPLEGAMMYAGALGR---------QAETDRA-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ ++++ + ++rLi+ +L++s+++ g
CP000230_2 310 ----------RQAVAELKNAHQAMSRLIRSILEISKLDCG 339

CP000230_3029: domain 1 of 1, from 534 to 605: score 40.5, E = 3.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ Lt I+g++e+L + ++d++ +++ ++
CP000230_3 534 VIGQLTGGVAHDFNNLLTIILGNLETLIR------HIDGASPPDPAR 574

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r ++e++ aer +L ++lL +sr +
CP000230_3 575 ---------VRTLVERATLGAERAAALTQRLLAFSRRQPL 605

CP000230_1432: domain 1 of 1, from 399 to 467: score 40.4, E = 3.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P++aIr++a+ ++ +l + + +e +
CP000230_1 399 VLGQIAASVAHEINQPVAAIRTFADNARIFL-------ARAQPEGA- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ti +er+ ++ +l+ ++r
CP000230_1 438 ----------DHNLQTIATLTERIGAITGELRAFARKSPS 467

CP000230_2598: domain 1 of 1, from 430 to 498: score 40.1, E = 4.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL +I g+++l++++l ++ ++e
CP000230_2 430 ELERFAFIASHDLQEPLRSIAGFIQLIERRLG------PDIDPEV-- 468

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ + a r++++i+ lL++sr++
CP000230_2 469 ----------AEFFSFVVGGAGRMRDQIEGLLEYSRLDRA 498

CP000230_1870: domain 1 of 1, from 243 to 311: score 39.2, E = 8.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL ++ y+ lL++ + +q++
CP000230_1 243 DLEQFAYVASHDLQEPLRMVSSYLGLLRR-----------RHGDQLA 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+ e+ + +++ a+r++rLi dlL++sr +
CP000230_1 279 PEA-------LEFMSYAEDGAKRMSRLILDLLEYSRVTTR 311

CP000230_2717: domain 1 of 1, from 464 to 530: score 38.8, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++HE+++ Lt+I g+a ++++ +e+ e
CP000230_2 464 AVGQLAGGIAHEFNNMLTSIGGFARMAQR--------TPERLERV-- 500

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l + r+a+r L ++lL +sr ++
CP000230_2 501 ----------TMCLAEVVRSADRAAGLTSQLLNFSRRTTE 530

CP000230_2922: domain 1 of 1, from 137 to 201: score 38.5, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++HELRTP+t++rg ++ L e+++ e++
CP000230_2 137 ERAFWNAAIAHELRTPVTVLRGRLQGLAEGVF----------EPT-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +l e l+rL++dl+ l e+g
CP000230_2 172 ----------PAMFSGLLIHMEGLSRLVEDLRVLGLDESG 201

CP000230_3286: domain 1 of 1, from 416 to 484: score 37.8, E = 2.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ P+ + y+ lL +++ + e
CP000230_3 416 ELERFAFIASHDLKEPVRMVASYVNLLSKRYG------NSFDGEG-- 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ +l+ a+r+ ++i+ +Ld++riea
CP000230_3 455 ----------REFLNFALEGARRIHQMIEGILDYARIEAS 484

CP000230_1496: domain 1 of 1, from 885 to 950: score 33.5, E = 3.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sH+LR+PL ++ ++ lL + + q
CP000230_1 885 AKSRFLAVASHDLRQPLQTLTLLQGLLAK----------KVEGVQS- 920

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l ++++ + +++++n lLd+ +ie g
CP000230_1 921 ----------RVLLARMDETLGAMSSMLNVLLDINQIEVG 950

CP000230_2906: domain 1 of 1, from 307 to 371: score 31.3, E = 1.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++H+LRTPL+ +r +e L++ ++ +
CP000230_2 307 GVRHVSDTIAHDLRTPLSRLRNRLERLQA----------DAQCTD-- 341

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +l e+++ll+ lL +++ e+g
CP000230_2 342 ----------RDELAAALAEVDSLLATFHALLRIAQVETG 371


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 2 0|=
-13 21 2|*=
-12 119 86|======*===
-11 303 449|======================== *
-10 568 833|============================================ *
-9 741 860|========================================================= *
-8 722 644|=================================================*======
-7 529 406|===============================*=========
-6 326 233|=================*========
-5 183 128|=========*=====
-4 112 68|=====*===
-3 59 36|==*==
-2 32 19|=*=
-1 16 9|*=
0 6 5|*
1 3 2|*
2 1 1|*
3 2 0|=
> 4 45 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 321.6438
P(chi-square) = 0

Total sequences searched: 3791

Whole sequence top hits:
tophits_s report:
Total hits: 32
Satisfying E cutoff: 32
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 32
Satisfying E cutoff: 32
Total memory: 33K


Acknowledgements:

This research is funded by:

Developed by: