Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Ehrlichia chaffeensis str. Arkansas  

Data for CP000236  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000236.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000236_0845 CDS_910621-909209 86.3 1.1e-24 1
CP000236_0718 CDS_759946-762432 48.3 6.5e-14 1
CP000236_0285 CDS_284058-286202 32.3 2.3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000236_0845 1/1 234 303 .. 1 87 [] 86.3 1.1e-24
CP000236_0718 1/1 439 505 .. 1 87 [] 48.3 6.5e-14
CP000236_0285 1/1 488 559 .. 1 87 [] 32.3 2.3e-09

Alignments of top-scoring domains:
CP000236_0845: domain 1 of 1, from 234 to 303: score 86.3, E = 1.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHELRTPL++I+g++e++++e+ ++ +
CP000236_0 234 SKSQFLANVSHELRTPLNSIIGFSEMMKAESM------GAIENVH-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey++ i++++ +ll+Lind+Ld+s++ea
CP000236_0 273 ---------YKEYINDIHNAGVHLLSLINDILDFSKAEAD 303

CP000236_0718: domain 1 of 1, from 439 to 505: score 48.3, E = 6.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl +++++++
CP000236_0 439 AIGQLAGGIAHDFNNILTAIIGFCDLLLI--------RHTATDPS-- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +Li +lL +sr ++
CP000236_0 476 ----------FSDIMQIKQNANRATNLIKQLLAFSRKQTL 505

CP000236_0285: domain 1 of 1, from 488 to 559: score 32.3, E = 2.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ ++ ++HE+++P+t I ++ae L ++ +++ + e
CP000236_0 488 AWSDVARRIAHEIKNPITPIYLAAERLSSKY----QHEIISDKES-- 528

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +y++ti+r + +++ +++++ ++++ +
CP000236_0 529 ---------FGRYIDTIIRHVTSIRCIVDEFAKFAKMSDP 559


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-16 3 0|=
-15 21 0|=======
-14 50 0|=================
-13 57 0|===================
-12 95 25|========*=======================
-11 143 130|===========================================*====
-10 169 243|========================================================= *
-9 170 250|========================================================= *
-8 143 187|================================================ *
-7 112 118|====================================== *
-6 69 68|======================*
-5 23 37|======== *
-4 22 20|======*=
-3 12 10|===*
-2 3 5|=*
-1 7 2|*==
0 2 1|*
> 1 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 259.3481
P(chi-square) = 0

Total sequences searched: 1105

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: