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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Escherichia coli UTI89  

Data for CP000243  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000243.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000243_3098 CDS_3069514-3072270 100.1 6.1e-28 1
CP000243_0412 CDS_432147-433442 91.0 2.4e-25 1
CP000243_2658 CDS_2645642-2649235 81.6 1.1e-22 1
CP000243_1030 CDS_1044451-1041719 80.7 1.9e-22 1
CP000243_2457 CDS_2456179-2453330 80.6 2.2e-22 1
CP000243_3580 CDS_3572703-3570367 78.9 6.5e-22 1
CP000243_2458 CDS_2456334-2458172 77.9 1.2e-21 1
CP000243_2826 CDS_2832889-2831399 75.4 6.3e-21 1
CP000243_2311 CDS_2300256-2301659 70.4 1.6e-19 1
CP000243_4825 CDS_4832303-4833775 68.1 7.5e-19 1
CP000243_4397 CDS_4381937-4380564 66.6 1.9e-18 1
CP000243_5062 CDS_5060785-5062209 62.4 3e-17 1
CP000243_3735 CDS_3704402-3703026 61.5 5.5e-17 1
CP000243_0560 CDS_580349-578907 61.0 7.6e-17 1
CP000243_3388 CDS_3387840-3389189 60.7 9.4e-17 1
CP000243_4360 CDS_4342406-4341357 59.7 1.8e-16 1
CP000243_0682 CDS_706415-703728 59.6 1.9e-16 1
CP000243_3823 CDS_3788536-3787184 55.0 3.8e-15 1
CP000243_2130 CDS_2064176-2062818 52.3 2.1e-14 1
CP000243_4604 CDS_4607023-4605923 45.0 2.6e-12 1
CP000243_1765 CDS_1723312-1724613 42.4 1.4e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000243_3098 1/1 292 357 .. 1 87 [] 100.1 6.1e-28
CP000243_0412 1/1 203 269 .. 1 87 [] 91.0 2.4e-25
CP000243_2658 1/1 711 777 .. 1 87 [] 81.6 1.1e-22
CP000243_1030 1/1 443 508 .. 1 87 [] 80.7 1.9e-22
CP000243_2457 1/1 469 534 .. 1 87 [] 80.6 2.2e-22
CP000243_3580 1/1 282 347 .. 1 87 [] 78.9 6.5e-22
CP000243_2458 1/1 392 457 .. 1 87 [] 77.9 1.2e-21
CP000243_2826 1/1 270 338 .. 1 87 [] 75.4 6.3e-21
CP000243_2311 1/1 240 304 .. 1 87 [] 70.4 1.6e-19
CP000243_4825 1/1 268 336 .. 1 87 [] 68.1 7.5e-19
CP000243_4397 1/1 238 300 .. 1 87 [] 66.6 1.9e-18
CP000243_5062 1/1 255 320 .. 1 87 [] 62.4 3e-17
CP000243_3735 1/1 237 303 .. 1 87 [] 61.5 5.5e-17
CP000243_0560 1/1 261 327 .. 1 87 [] 61.0 7.6e-17
CP000243_3388 1/1 236 302 .. 1 87 [] 60.7 9.4e-17
CP000243_4360 1/1 129 186 .. 1 79 [. 59.7 1.8e-16
CP000243_0682 1/1 664 731 .. 1 87 [] 59.6 1.9e-16
CP000243_3823 1/1 233 293 .. 1 87 [] 55.0 3.8e-15
CP000243_2130 1/1 235 301 .. 1 87 [] 52.3 2.1e-14
CP000243_4604 1/1 145 205 .. 1 87 [] 45.0 2.6e-12
CP000243_1765 1/1 211 271 .. 1 87 [] 42.4 1.4e-11

Alignments of top-scoring domains:
CP000243_3098: domain 1 of 1, from 292 to 357: score 100.1, E = 6.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
CP000243_3 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELTPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP000243_3 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

CP000243_0412: domain 1 of 1, from 203 to 269: score 91.0, E = 2.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ e ++l r
CP000243_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMDE---------QPLEGAVR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++++r++ L+ +lL+ls+iea
CP000243_0 240 ----------EKALHTMREQTQRMEGLVKQLLTLSKIEAA 269

CP000243_2658: domain 1 of 1, from 711 to 777: score 81.6, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++I+g++elL + ls eqr
CP000243_2 711 AKSQFLATMSHEIRTPISSIMGFLELLSG---------SGLSKEQR- 747

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ ++ +++ll Li ++Ld +ie+g
CP000243_2 748 ----------VEAISLAYATGQSLLGLIGEILDVDKIESG 777

CP000243_1030: domain 1 of 1, from 443 to 508: score 80.7, E = 1.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+a+lL + ++ q
CP000243_1 443 AKSAFLAAMSHEIRTPLYGILGTAQLLAD---------NPALNAQ-- 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll ++nd+Ld+s ieag
CP000243_1 479 ----------RDDLRAITDSGESLLTILNDILDYSAIEAG 508

CP000243_2457: domain 1 of 1, from 469 to 534: score 80.6, E = 2.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP000243_2 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP000243_2 505 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 534

CP000243_3580: domain 1 of 1, from 282 to 347: score 78.9, E = 6.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
CP000243_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CP000243_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

CP000243_2458: domain 1 of 1, from 392 to 457: score 77.9, E = 1.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE R+PLtaIrgy+++L+ +++++ +
CP000243_2 392 TLGELMAGVAHEVRNPLTAIRGYVQILRQ---------QTRDPIH-- 427

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+++l+e++++++ i++lL++sr ++
CP000243_2 428 ----------QEYLSVVLKEIDSINKVIQQLLEFSRPRHS 457

CP000243_2826: domain 1 of 1, from 270 to 338: score 75.4, E = 6.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CP000243_2 270 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r +a
CP000243_2 309 ----------KEVVSILDSSSRNLQKLIEQLLDYNRKQAD 338

CP000243_2311: domain 1 of 1, from 240 to 304: score 70.4, E = 1.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ + ++e+
CP000243_2 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RKFTPET-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++ e+ l +L++dl +ls ++g
CP000243_2 278 -------------LASLQAEVGTLTKLVDDLHQLSMSDEG 304

CP000243_4825: domain 1 of 1, from 268 to 336: score 68.1, E = 7.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+an+sH+LRTPLt+++gy+e+L +++ + ls+e+
CP000243_4 268 QRREFIANISHDLRTPLTSLLGYLETLSMKS-------DSLSSED-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl t+lr+++ ++L +l +l+r+e+g
CP000243_4 306 ---------CHKYLTTALRQGHKVRHLSCQLFELARLEHG 336

CP000243_4397: domain 1 of 1, from 238 to 300: score 66.6, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CP000243_4 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP000243_4 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CP000243_5062: domain 1 of 1, from 255 to 320: score 62.4, E = 3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ +e
CP000243_5 255 YIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPPEVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ il + r+++L++ lL +r+e+
CP000243_5 291 ----------ARFTDNILTQNARMQALVETLLRQARLENR 320

CP000243_3735: domain 1 of 1, from 237 to 303: score 61.5, E = 5.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +++++ e
CP000243_3 237 ALGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RAPAGGEA-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ +ea+rl+r +++lL+l + +
CP000243_3 274 ----------HQLAQVMAKEADRLNRVVSELLELVKPTHL 303

CP000243_0560: domain 1 of 1, from 261 to 327: score 61.0, E = 7.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HE+RTP+t +++ +e++l + +s +++
CP000243_0 261 RQSNFSADIAHEIRTPITNLITQTEIALS---------QSRSQKEL- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e+ r+ ++++d+L l++++++
CP000243_0 298 ----------EDVLYSNLEELTRMAKMVSDMLFLAQADNN 327

CP000243_3388: domain 1 of 1, from 236 to 302: score 60.7, E = 9.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PLta++ +e+++ ++ +++ r
CP000243_3 236 RERRFTSDAAHELRSPLTALKVQTEVAQL---------SDDDPQAR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ ++r rL+++lL+lsr+++
CP000243_3 273 ----------KKALLQLHSGIDRATRLVDQLLTLSRLDSL 302

CP000243_4360: domain 1 of 1, from 129 to 186: score 59.7, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000243_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP000243_4 165 ----------LEYTKVIIEQADRLRNLVDRLL 186

CP000243_0682: domain 1 of 1, from 664 to 731: score 59.6, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + ++++
CP000243_0 664 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASEGSPH-- 701

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CP000243_0 702 ----------ARQASEIRQHVLNTTRLVNNLLDMARIQSG 731

CP000243_3823: domain 1 of 1, from 233 to 293: score 55.0, E = 3.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CP000243_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP000243_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP000243_2130: domain 1 of 1, from 235 to 301: score 52.3, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+ +l+HELRTP++a++g ++ l +++s +
CP000243_2 235 RLSQFADDLAHELRTPINALLGQNQVTLS---------QTRSIAE-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ + ++e+e ++rL +++L l+r++ +
CP000243_2 271 ---------YQKTIAGNIEELENISRLTENILFLARADKN 301

CP000243_4604: domain 1 of 1, from 145 to 205: score 45.0, E = 2.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CP000243_4 145 NERLFTADVAHELRTPLAGVRLHLELLAK---------TH------- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++++ + +++lL+l+r+++
CP000243_4 176 ----------HIDVAPLVARLDQMMESVSQLLQLARAGQS 205

CP000243_1765: domain 1 of 1, from 211 to 271: score 42.4, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + ls+ +
CP000243_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LSAAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP000243_1 245 -------------SQALNRDISQLEALIEELLTYARLDRP 271


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 1 0|=
-14 36 0|===
-13 112 3|*======
-12 267 115|======*=========
-11 553 600|================================= *
-10 888 1114|===================================================== *
-9 945 1150|======================================================== *
-8 801 861|================================================ *
-7 597 542|===============================*====
-6 367 312|==================*===
-5 212 171|==========*==
-4 107 91|=====*=
-3 58 48|==*=
-2 34 25|=*
-1 33 13|*=
0 18 6|*=
1 6 3|*
2 6 1|*
3 1 0|=
4 0 0|
> 5 24 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 366.8432
P(chi-square) = 0

Total sequences searched: 5066

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: