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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Frankia sp. CcI3  

Data for CP000249  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000249.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000249_0301 CDS_355612-357036 84.1 1.9e-23 1
CP000249_3642 CDS_4420977-4422509 82.8 4.4e-23 1
CP000249_0312 CDS_375302-373644 78.4 7.6e-22 1
CP000249_4004 CDS_4838938-4834718 78.2 8.8e-22 1
CP000249_0229 CDS_274454-275956 76.8 2.2e-21 1
CP000249_3140 CDS_3768700-3767555 71.8 5.7e-20 1
CP000249_0966 CDS_1156882-1155743 70.9 1e-19 1
CP000249_2131 CDS_2524259-2522541 70.1 1.8e-19 1
CP000249_2992 CDS_3596486-3598216 63.3 1.5e-17 1
CP000249_2417 CDS_2840888-2839467 61.6 4.5e-17 1
CP000249_3245 CDS_3887327-3889891 60.9 7.3e-17 1
CP000249_0461 CDS_550454-551731 59.7 1.5e-16 1
CP000249_2341 CDS_2746882-2745497 57.9 5e-16 1
CP000249_3581 CDS_4330092-4328518 54.4 4.8e-15 1
CP000249_2372 CDS_2780246-2778591 51.4 3.6e-14 1
CP000249_0283 CDS_337183-338814 50.4 6.7e-14 1
CP000249_1140 CDS_1376036-1377616 50.3 7.3e-14 1
CP000249_2129 CDS_2521975-2519963 40.6 4e-11 1
CP000249_4133 CDS_4985794-4983821 27.9 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000249_0301 1/1 239 305 .. 1 87 [] 84.1 1.9e-23
CP000249_3642 1/1 123 188 .. 1 87 [] 82.8 4.4e-23
CP000249_0312 1/1 303 370 .. 1 87 [] 78.4 7.6e-22
CP000249_4004 1/1 880 948 .. 1 87 [] 78.2 8.8e-22
CP000249_0229 1/1 264 331 .. 1 87 [] 76.8 2.2e-21
CP000249_3140 1/1 157 225 .. 1 87 [] 71.8 5.7e-20
CP000249_0966 1/1 149 216 .. 1 87 [] 70.9 1e-19
CP000249_2131 1/1 349 417 .. 1 87 [] 70.1 1.8e-19
CP000249_2992 1/1 232 296 .. 1 87 [] 63.3 1.5e-17
CP000249_2417 1/1 212 279 .. 1 87 [] 61.6 4.5e-17
CP000249_3245 1/1 622 690 .. 1 87 [] 60.9 7.3e-17
CP000249_0461 1/1 146 212 .. 1 87 [] 59.7 1.5e-16
CP000249_2341 1/1 247 313 .. 1 87 [] 57.9 5e-16
CP000249_3581 1/1 250 318 .. 1 87 [] 54.4 4.8e-15
CP000249_2372 1/1 265 331 .. 1 87 [] 51.4 3.6e-14
CP000249_0283 1/1 315 383 .. 1 87 [] 50.4 6.7e-14
CP000249_1140 1/1 272 344 .. 1 87 [] 50.3 7.3e-14
CP000249_2129 1/1 285 351 .. 1 87 [] 40.6 4e-11
CP000249_4133 1/1 274 350 .. 1 87 [] 27.9 1.6e-07

Alignments of top-scoring domains:
CP000249_0301: domain 1 of 1, from 239 to 305: score 84.1, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+Irgya+lL+ + ++ ++
CP000249_0 239 QLRRFAADASHELRTPLTSIRGYADLLRG---------GMVTAVDA- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++++ea r++ L++dlL l+ ++++
CP000249_0 276 ----------DDALRRVQEEAARMSTLVDDLLYLAHLDEQ 305

CP000249_3642: domain 1 of 1, from 123 to 188: score 82.8, E = 4.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+e++a l HELRTPL+a++g+a+lL+ ++l+++
CP000249_3 123 AKDELIARLGHELRTPLNAMLGFAQLLEL---------EPLTPDL-- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+ ++++++Li+d+Ldl+r++ag
CP000249_3 159 ----------HDDVERIITGGRHMQALIDDVLDLARLRAG 188

CP000249_0312: domain 1 of 1, from 303 to 370: score 78.4, E = 7.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla++sHELRTPL+aI+gyael ++ +++ +++
CP000249_0 303 RMRQFLADVSHELRTPLAAISGYAELTRR-------TREHVPADV-- 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++e+ r+ +L++dlL l+r+++g
CP000249_0 341 ----------TYAMSRVESESARMTALVSDLLLLARLDSG 370

CP000249_4004: domain 1 of 1, from 880 to 948: score 78.2, E = 8.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++ +a+lL + d +ls +q+
CP000249_4 880 YKSEFLANMSHELRTPLNSLLILAKLLAD------NPDRNLSRKQI- 919

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ eti++++ ll+Lind+Ldls+ eag
CP000249_4 920 -----------DFAETIHSAGSELLELINDILDLSKVEAG 948

CP000249_0229: domain 1 of 1, from 264 to 331: score 76.8, E = 2.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt+Irgyae+ +++ +e++e+
CP000249_0 264 RLRRFVGDASHELRTPLTSIRGYAEMFHRGA-------AERPEDL-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i++e+ r+++L++dlL l+r+++
CP000249_0 302 ----------AMVMRRIEEESARMSELVDDLLLLARLDQR 331

CP000249_3140: domain 1 of 1, from 157 to 225: score 71.8, E = 5.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++a+++HELR PLt+++g++ +Ll+ +++ ++eq+
CP000249_3 157 NRADLVATVAHELRSPLTSVKGFTATLLA-------KWDRFTDEQK- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+ +a+r rL+ ++Ld sri++g
CP000249_3 196 ----------KLMLNTVNTDADRVTRLLTEVLDVSRIDSG 225

CP000249_0966: domain 1 of 1, from 149 to 216: score 70.9, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a +sH+LRTPL++Ir++ae+L+++l ++e++
CP000249_0 149 SRRELVAWISHDLRTPLAGIRATAEALQDGL--------VTDAETT- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + +l +aerl +++dl +l+r++ag
CP000249_0 187 ----------ARYHRLMLADAERLTGMVDDLFELARLQAG 216

CP000249_2131: domain 1 of 1, from 349 to 417: score 70.1, E = 1.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LR PL +++g++ +L +e+ ++++e+
CP000249_2 349 ELGSFTYSVSHDLRAPLRSMSGFSRILMDEYA------EDMPEQA-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++++r+++r+ +Li+dlL +sr++ +
CP000249_2 388 ----------RGYLDRVQRSSDRMGALIDDLLAFSRLGRQ 417

CP000249_2992: domain 1 of 1, from 232 to 296: score 63.3, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla++sH++RTPLta+r+ +elL+ ++ ++ + ++
CP000249_2 232 SQRRFLADVSHQIRTPLTAMRLRLELLQQDV-------DADTTDE-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l e++rl+r+++ lL sr+e+
CP000249_2 270 -------------VAGTLVEVHRLSRMVDGLLAVSRAEHA 296

CP000249_2417: domain 1 of 1, from 212 to 279: score 61.6, E = 4.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHELRTPLt +r+ +++++ +++ +
CP000249_2 212 AQRRFVANASHELRTPLTMMRTSLDVAEG---------KPQPVPR-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + ++++ +++ +rLi+++L+l+r+ +g
CP000249_2 248 --------EVTVLAGKLREGLDQADRLIENFLTLARAHQG 279

CP000249_3245: domain 1 of 1, from 622 to 690: score 60.9, E = 7.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+LR PL++ ++++ L+ + e+s+e++
CP000249_3 622 TRRALLTAVSHDLRSPLATASAAVANLRG-------NEVEWSAEEQ- 660

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l t+++++++l rL+++lLd+sr++ag
CP000249_3 661 ----------AELLATAEEALDHLARLVENLLDMSRLQAG 690

CP000249_0461: domain 1 of 1, from 146 to 212: score 59.7, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+ +ae+ + + ++ +
CP000249_0 146 VRRDFVANISHELKTPVGALHVLAEAVAA---------ACEDPVAV- 182

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++ +e+ rl rL++++ dlsr++
CP000249_0 183 ----------RRFASRMTHESTRLARLVQEIIDLSRLQGA 212

CP000249_2341: domain 1 of 1, from 247 to 313: score 57.9, E = 5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++++ l+HELRTPLt+I g+a+lL +t+l+++
CP000249_2 247 AEQRLTSELAHELRTPLTTIHGAADLLAL--------RTDLDDQA-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + i++++ ++++ i+ lLdl+r +
CP000249_2 284 ----------REDVALIKNSSASMSNTISALLDLARRHRQ 313

CP000249_3581: domain 1 of 1, from 250 to 318: score 54.4, E = 4.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+++a++sHE+RTPLt+Irg++ ++++ +++ ls+ q+
CP000249_3 250 IRSDLVATVSHEFRTPLTGIRGNLLTIKR-------RRDRLSDTQL- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ + + ++rl+rL++++L+ + +
CP000249_3 289 ----------DDLLDAAVNYSDRLSRLLENMLTAATATGT 318

CP000249_2372: domain 1 of 1, from 265 to 331: score 51.4, E = 3.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a++ HELRTPLt++++ +el+ + + ++ e++
CP000249_2 265 RDRAFVADAGHELRTPLTVLKAELELAAR---------PGRTREEL- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ + +e++rl rL + lL+l+r++ g
CP000249_2 302 ----------IEAIVNVSDETDRLIRLAESLLTLARMDGG 331

CP000249_0283: domain 1 of 1, from 315 to 383: score 50.4, E = 6.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL + +++lL++++ +++ +e
CP000249_0 315 DLEQFAYVASHDLQEPLRKVASFCQLLERRY-------GDRLDERG- 353

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ + + a+r+++LindlL +sr +
CP000249_0 354 ----------SQYIAFAVDGAKRMQQLINDLLAFSRVGRT 383

CP000249_1140: domain 1 of 1, from 272 to 344: score 50.3, E = 7.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ ++sHELRTPLt++r+++elLl+ +e+++ +l
CP000249_1 272 RQRQLVDDASHELRTPLTSLRTNIELLLR---------AEANPHRAL 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p++ + +l+ ++ + + l+ L+++l +l+r ea+
CP000249_1 310 PAADH-----EALLRDVDAQMRELSGLVSELVELARDEAP 344

CP000249_2129: domain 1 of 1, from 285 to 351: score 40.6, E = 4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++H++++ L +I gyae+ l+ + +++
CP000249_2 285 SLGRLAGGVAHDFNNLLGVITGYAEIVLD--------TLPDDDPC-- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + i r+a++ L ++lL++sr e+
CP000249_2 322 ----------RADMDEISRAADQAAGLTRQLLTFSRQESS 351

CP000249_4133: domain 1 of 1, from 274 to 350: score 27.9, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++H++++ L +++ ya+ ee+ ++ + ++
CP000249_4 274 SLGQLAGGVAHDFNNLLGVVINYASFVAEEV--------AQAAATQT 312

peLR...ledpeyreyletilreaerllrLindlLdlsrieag<-*
+R ++ + +e i+r+a+r +L +lL++ r e+
CP000249_4 313 AGGRwsdV-----LRDIEQIQRAADRATALTHQLLTFGRRETV 350


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 5 0|=
-13 40 3|*==
-12 173 102|======*=====
-11 448 533|============================== *
-10 723 989|================================================= *
-9 875 1021|==========================================================*
-8 798 764|==================================================*===
-7 570 482|================================*=====
-6 337 277|==================*====
-5 231 152|==========*=====
-4 127 81|=====*===
-3 61 43|==*==
-2 49 22|=*==
-1 20 11|*=
0 10 6|*
1 7 3|*
2 5 1|*
3 0 0|
4 0 0|
> 5 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 297.3764
P(chi-square) = 0

Total sequences searched: 4499

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: