Acidobacteria Actinobacteria Alphaproteobacteria
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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Rhodopseudomonas palustris HaA2  

Data for CP000250  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000250.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000250_3800 CDS_4360663-4364943 131.0 1e-36 2
CP000250_4203 CDS_4801431-4798798 95.6 1.1e-26 1
CP000250_0412 CDS_458186-456237 90.1 3.9e-25 1
CP000250_3420 CDS_3935569-3937884 87.9 1.6e-24 1
CP000250_3833 CDS_4404716-4407355 85.6 7.3e-24 1
CP000250_3946 CDS_4530297-4526821 85.6 7.6e-24 1
CP000250_3379 CDS_3880910-3882502 83.7 2.5e-23 1
CP000250_0774 CDS_868280-869629 79.7 3.6e-22 1
CP000250_3498 CDS_4024809-4022926 78.4 8e-22 1
CP000250_1249 CDS_1433082-1429714 76.1 3.6e-21 1
CP000250_4085 CDS_4673771-4675444 75.0 7.6e-21 1
CP000250_1467 CDS_1659667-1656218 73.2 2.5e-20 1
CP000250_0623 CDS_703696-706209 72.9 2.9e-20 1
CP000250_0463 CDS_511624-513423 68.7 4.7e-19 1
CP000250_4619 CDS_5255477-5258179 67.6 9.1e-19 1
CP000250_4535 CDS_5160324-5163833 61.4 5.2e-17 1
CP000250_4333 CDS_4942983-4941643 58.7 3.2e-16 1
CP000250_2873 CDS_3284227-3283058 51.0 4.6e-14 1
CP000250_0814 CDS_931824-933038 46.7 7.9e-13 1
CP000250_0711 CDS_798005-800488 46.3 1e-12 1
CP000250_4358 CDS_4968285-4965769 46.2 1.1e-12 1
CP000250_0212 CDS_240463-238556 44.8 2.8e-12 1
CP000250_2871 CDS_3281449-3279161 44.1 4.3e-12 1
CP000250_3425 CDS_3947715-3946246 42.8 9.7e-12 1
CP000250_4152 CDS_4744474-4743086 41.4 2.5e-11 1
CP000250_1451 CDS_1642444-1640969 41.1 3.1e-11 1
CP000250_2366 CDS_2728423-2727053 40.1 5.9e-11 1
CP000250_1362 CDS_1555456-1553924 39.4 9.4e-11 1
CP000250_0060 CDS_64173-62851 36.7 5.5e-10 1
CP000250_0035 CDS_36800-34035 36.2 7.6e-10 1
CP000250_1956 CDS_2228682-2227354 35.7 1e-09 1
CP000250_4637 CDS_5278875-5280611 35.3 1.4e-09 1
CP000250_3579 CDS_4123837-4126617 34.4 2.3e-09 1
CP000250_3753 CDS_4308076-4305452 32.9 6.6e-09 1
CP000250_2142 CDS_2439355-2437388 32.1 1.1e-08 1
CP000250_4421 CDS_5034829-5037105 30.6 2.9e-08 1
CP000250_4422 CDS_5037119-5039446 30.4 3.2e-08 1
CP000250_0544 CDS_613704-610543 28.9 8.5e-08 1
CP000250_3253 CDS_3739436-3741550 28.9 8.7e-08 1
CP000250_3011 CDS_3443780-3445312 28.7 9.6e-08 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000250_4203 1/1 370 435 .. 1 87 [] 95.6 1.1e-26
CP000250_0412 1/1 132 197 .. 1 87 [] 90.1 3.9e-25
CP000250_3420 1/1 538 607 .. 1 87 [] 87.9 1.6e-24
CP000250_3833 1/1 335 400 .. 1 87 [] 85.6 7.3e-24
CP000250_3946 1/1 656 722 .. 1 87 [] 85.6 7.6e-24
CP000250_3379 1/1 263 332 .. 1 87 [] 83.7 2.5e-23
CP000250_0774 1/1 214 281 .. 1 87 [] 79.7 3.6e-22
CP000250_3498 1/1 372 441 .. 1 87 [] 78.4 8e-22
CP000250_1249 1/1 672 738 .. 1 87 [] 76.1 3.6e-21
CP000250_4085 1/1 198 266 .. 1 87 [] 75.0 7.6e-21
CP000250_1467 1/1 920 989 .. 1 87 [] 73.2 2.5e-20
CP000250_0623 1/1 605 673 .. 1 87 [] 72.9 2.9e-20
CP000250_0463 1/1 365 430 .. 1 87 [] 68.7 4.7e-19
CP000250_4619 1/1 664 732 .. 1 87 [] 67.6 9.1e-19
CP000250_3800 1/2 359 425 .. 1 87 [] 66.9 1.5e-18
CP000250_3800 2/2 1056 1122 .. 1 87 [] 64.1 9.1e-18
CP000250_4535 1/1 802 867 .. 1 87 [] 61.4 5.2e-17
CP000250_4333 1/1 230 295 .. 1 87 [] 58.7 3.2e-16
CP000250_2873 1/1 139 194 .. 1 78 [. 51.0 4.6e-14
CP000250_0814 1/1 32 97 .. 1 87 [] 46.7 7.9e-13
CP000250_0711 1/1 459 527 .. 1 87 [] 46.3 1e-12
CP000250_4358 1/1 452 518 .. 1 87 [] 46.2 1.1e-12
CP000250_0212 1/1 402 472 .. 1 87 [] 44.8 2.8e-12
CP000250_2871 1/1 507 578 .. 1 87 [] 44.1 4.3e-12
CP000250_3425 1/1 237 303 .. 1 87 [] 42.8 9.7e-12
CP000250_4152 1/1 259 317 .. 1 87 [] 41.4 2.5e-11
CP000250_1451 1/1 251 317 .. 1 87 [] 41.1 3.1e-11
CP000250_2366 1/1 252 310 .. 1 87 [] 40.1 5.9e-11
CP000250_1362 1/1 280 351 .. 1 87 [] 39.4 9.4e-11
CP000250_0060 1/1 210 274 .. 1 87 [] 36.7 5.5e-10
CP000250_0035 1/1 536 602 .. 1 87 [] 36.2 7.6e-10
CP000250_1956 1/1 229 287 .. 1 87 [] 35.7 1e-09
CP000250_4637 1/1 349 418 .. 1 87 [] 35.3 1.4e-09
CP000250_3579 1/1 538 604 .. 1 87 [] 34.4 2.3e-09
CP000250_3753 1/1 493 559 .. 1 87 [] 32.9 6.6e-09
CP000250_2142 1/1 275 341 .. 1 87 [] 32.1 1.1e-08
CP000250_4421 1/1 519 587 .. 1 87 [] 30.6 2.9e-08
CP000250_4422 1/1 538 606 .. 1 87 [] 30.4 3.2e-08
CP000250_0544 1/1 668 734 .. 1 87 [] 28.9 8.5e-08
CP000250_3253 1/1 339 404 .. 1 87 [] 28.9 8.7e-08

Alignments of top-scoring domains:
CP000250_4203: domain 1 of 1, from 370 to 435: score 95.6, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++++g+a Lle t+l++eq
CP000250_4 370 AKSDFLAMMSHEIRTPMNGVLGLANSLLE---------TKLDPEQ-- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ti+++++ llr++nd+Ldls++eag
CP000250_4 406 ----------QHAVTTIRDSGDNLLRILNDILDLSKLEAG 435

CP000250_0412: domain 1 of 1, from 132 to 197: score 90.1, E = 3.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks++la++sHE+RTPL++I+g++ lLl+ t+l++eq
CP000250_0 132 RKSRLLAMASHEIRTPLNGIIGMSGLLLD---------TALTPEQ-- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + ++ +++ l Li++lLd+srieag
CP000250_0 168 ----------ATYARAVKTSGDALATLIDELLDYSRIEAG 197

CP000250_3420: domain 1 of 1, from 538 to 607: score 87.9, E = 1.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL+aI+g++e++ +++ ++l++e+
CP000250_3 538 TKSKFLANMSHELRTPLNAIIGFSEIMGSGMF------GTLGSEK-- 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i ++++ll+ ind+Ld+s+ieag
CP000250_3 577 ---------YQEYCHDIMTSGHYLLEVINDILDMSKIEAG 607

CP000250_3833: domain 1 of 1, from 335 to 400: score 85.6, E = 7.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+a++sHE+RTP++a++g+a Lle t l+++q
CP000250_3 335 AKSSFVAMMSHEIRTPMNAVLGLANNLLE---------TRLDADQ-- 370

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ i+++++ ll++++d+Ld+s++eag
CP000250_3 371 ----------RRAVVGIHDAGDNLLEILDDILDFSKLEAG 400

CP000250_3946: domain 1 of 1, from 656 to 722: score 85.6, E = 7.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +flan+sHE+RTPL++I+gya+l+le d++l + +
CP000250_3 656 AKADFLANMSHEIRTPLNGIIGYADLALE--------DQTLVPTT-- 692

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e+i +++++l+ +i+d+Ld+s+iea
CP000250_3 693 ----------RRQVERIFEASDSLRVIIDDILDFSKIEAC 722

CP000250_3379: domain 1 of 1, from 263 to 332: score 83.7, E = 2.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTPL+aI+g++e+++ + ++
CP000250_3 263 AKSRFLAQMSHELRTPLNAILGFSEVMKS---------EIFGAHA-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+p y+ey i++++ +ll+Lin++Ldlsrieag
CP000250_3 299 ------VPVYKEYSADIHNSGVHLLNLINEILDLSRIEAG 332

CP000250_0774: domain 1 of 1, from 214 to 281: score 79.7, E = 3.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++e+L+ +++++ +++
CP000250_0 214 MRADFVANASHELRTPLAALSGFIETLQG---------PARDDAKAR 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ +a r+ rLi+dlL lsr e
CP000250_0 252 ----------ERFLGIMQAQATRMARLIDDLLSLSRVELS 281

CP000250_3498: domain 1 of 1, from 372 to 441: score 78.4, E = 8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sHELRTPL+a++g+++++l + l +e r
CP000250_3 372 TKSRFLATMSHELRTPLNAVIGFSDMILH------EDELMLAPERR- 411

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey + i +++++ll+ +n +Ld+s+ie+g
CP000250_3 412 ----------KEYAQLINDSGQHLLSVVNGILDMSKIESG 441

CP000250_1249: domain 1 of 1, from 672 to 738: score 76.1, E = 3.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELR PL+aI+gya+lL+ d+ l++
CP000250_1 672 AKSRYVVGLSHELRSPLNAISGYAQLLEQ--------DASLPPRP-- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ ++r+a++l+ Li+ lLd+s+ieag
CP000250_1 709 ----------RDQIRLMRRSADHLSGLIDGLLDISKIEAG 738

CP000250_4085: domain 1 of 1, from 198 to 266: score 75.0, E = 7.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+a++sHELRTPLt+I+g + lL + + +e+
CP000250_4 198 LRDEFVATVSHELRTPLTSISGSLGLLVG------QWVGIFPEPA-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++ ++rl rLind+Ld+++++ g
CP000250_4 237 ----------ARLVAIAYKNSQRLVRLINDILDIEKLGDG 266

CP000250_1467: domain 1 of 1, from 920 to 989: score 73.2, E = 2.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak + la lsHE+R PL+aI+g+ae++ e + ++l+ e
CP000250_1 920 AKADVLARLSHEIRMPLNAIIGFAEVMIE------ERFGALGNER-- 958

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++yl+ i+ ++er ++ dlLdlsrie+g
CP000250_1 959 ---------YADYLKDIRASGERVIGIVGDLLDLSRIETG 989

CP000250_0623: domain 1 of 1, from 605 to 673: score 72.9, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +f+ ++s ELR PLt+I+g+a+lL + ++ ++l+++q
CP000250_0 605 IKIDFVHHVSYELRSPLTTIIGFAHLLGD------PSTGPLNDKQ-- 643

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+ i ++++ ll++in++Ldl+ i+ag
CP000250_0 644 ----------SEYIAYITSSTNALLAIINNILDLASIDAG 673

CP000250_0463: domain 1 of 1, from 365 to 430: score 68.7, E = 4.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHEL++PLt++r ++e+L ++++ r
CP000250_0 365 AIERFAADVSHELKNPLTSLRSAVETLPL----------AKNANSR- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +i+++++rl+rLi+d+ d sr++a+
CP000250_0 401 ----------SRLLAVIEHDVKRLDRLISDISDASRLDAE 430

CP000250_4619: domain 1 of 1, from 664 to 732: score 67.6, E = 9.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH++RTPL++I+g a L +++ ++l++ +
CP000250_4 664 VRNTLLASISHDFRTPLSSILGSATSLSTFG-------DKLDDAAT- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l i++eae l++++++lL ++rie+g
CP000250_4 703 ----------RDLLANIREEAEGLDEMVRNLLSITRIESG 732

CP000250_3800: domain 1 of 2, from 359 to 425: score 66.9, E = 1.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt ++ +e l+ ++l+ +q
CP000250_3 359 AKTAFFSNVSHEFRTPLTLMLSPLEDVLN--------QATLPNDQ-- 395

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +++r + rll+L+n lLd++rieag
CP000250_3 396 ----------QALLGIAHRNGLRLLKLVNTLLDFARIEAG 425

CP000250_3800: domain 2 of 2, from 1056 to 1122: score 64.1, E = 9.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+Ir a+lL++ el++e +
CP000250_3 1056 AIGQLTGGVAHDFNNLLTVIRSSADLLRR---------RELPPERM- 1092

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i + a+r +L +lL+++r a+
CP000250_3 1093 ----------RRYVDAISDTADRAAKLTGQLLTFARRHAQ 1122

CP000250_4535: domain 1 of 1, from 802 to 867: score 61.4, E = 5.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH++ +PL+a r+ya L e + e+
CP000250_4 802 SKTRFLAAASHDILQPLNAARLYATSLVE---------RQNGGED-- 837

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e i++++e ++++i lLd+sr++ag
CP000250_4 838 ----------SRLVENIDESLEAIEEIIGALLDISRLDAG 867

CP000250_4333: domain 1 of 1, from 230 to 295: score 58.7, E = 3.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e +a ++HELR PLt++++ a+++l+ t+ ++
CP000250_4 230 HEREITAFAAHELRSPLTGLKTQAQVALA---------TTDPAVA-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ il +++r rL+++lL+l+r++a+
CP000250_4 266 ----------RAALQQILVAVDRATRLVRQLLTLARLDAQ 295

CP000250_2873: domain 1 of 1, from 139 to 194: score 51.0, E = 4.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+l+HE+++PL++Irg+a+lL+ +s+e+
CP000250_2 139 SVIALAAMLAHEIKNPLSGIRGAAQLLEQ----------QASSED-- 173

peLRledpeyreyletilreaerllrLindl<-*
r +++ i +ea+r+ L++++
CP000250_2 174 ----------RMLTRLICDEADRIVTLVDRM 194

CP000250_0814: domain 1 of 1, from 32 to 97: score 46.7, E = 7.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + la+ +HE RTPLt+I++ ++lL + ++l+e +
CP000250_0 32 MVETALAAFAHEVRTPLTGILAVSDLLAT---------SDLGERE-- 67

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ti+ ae+l+ L + d +r++a
CP000250_0 68 ----------RRWVDTIKAGAEHLSGLATLFVDAARLGAT 97

CP000250_0711: domain 1 of 1, from 459 to 527: score 46.3, E = 1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g +el++++l+ + +++
CP000250_0 459 AVGQLTGGIAHDFNNLLTGIVGSLELMRTRLE------QGRTDNI-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ + +a+r +L +lL ++r +
CP000250_0 498 ----------ARYIDAAMISANRAAALTHRLLAFARRQPL 527

CP000250_4358: domain 1 of 1, from 452 to 518: score 46.2, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++HE+++ L a++gy+e++l+ + ++ +
CP000250_4 452 AVGTLAGGIAHEFNNILLAMMGYSEMALD---------ASADGSAA- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ +++++r i+++L +sr +a
CP000250_4 489 ----------ARYIQETIDSGHRAKLVIDQVLAFSRKGAR 518

CP000250_0212: domain 1 of 1, from 402 to 472: score 44.8, E = 2.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+++HE ++PL+aI+ y + +++l t + ++ +
CP000250_0 402 VLGQLAASIAHEVNQPLAAIINYGKSGKRWL-------TRAEPDLV- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ l++i + ++r + + +++ l+r a+
CP000250_0 441 --------EVADCLDKIVSNGNRAADVVGRVRSLARKSAP 472

CP000250_2871: domain 1 of 1, from 507 to 578: score 44.1, E = 4.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ g ++ +
CP000250_2 507 AWGDVARRIAHEIKNPLTPIQLSAERIKRKF-----GKVIVEDKGI- 547

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ti r+++ ++r+++++ ++r+ +
CP000250_2 548 ---------FEQCTDTIVRQVDDIRRMVDEFSRFARMPKP 578

CP000250_3425: domain 1 of 1, from 237 to 303: score 42.8, E = 9.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e n++H+L+TPLt +r ae +l+ se +
CP000250_3 237 GLKEVSDNIAHDLKTPLTRLRNRAEEALA---------LSGSEAD-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le+ ++e++ l r n lL ++r+e+g
CP000250_3 273 ---------YRAALERTIEESDGLIRTFNALLMIARAESG 303

CP000250_4152: domain 1 of 1, from 259 to 317: score 41.4, E = 2.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRT Lt ++ +el+ + +++
CP000250_4 259 QRTAMLAGVSHDLRTILTRFKLELELIGD-------------APE-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++++ ++++++ L ++r ++g
CP000250_4 291 -------------TDGMRKDVDEMSAMLEAYLAFARGDSG 317

CP000250_1451: domain 1 of 1, from 251 to 317: score 41.1, E = 3.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++H++++ Lt+I g+aelL+e + + e++
CP000250_1 251 TVGRLSGAIAHDFNNLLTVIVGNAELLRE---------QLEPHEDL- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e i ++++r +L ++lL + r +
CP000250_1 288 ----------RQLAEHISSAGDRAAELTQRLLAFGRRQIL 317

CP000250_2366: domain 1 of 1, from 252 to 310: score 40.1, E = 5.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++la+l H+LR P+ta+r ae+ +
CP000250_2 252 ERTRMLAALGHDLRSPITALRVRAEMVDD------------------ 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e e+++ ++ ++++++ L ++r +
CP000250_2 281 ----------AENKERMIATLDEMQQMVEATLAFARGVST 310

CP000250_1362: domain 1 of 1, from 280 to 351: score 39.4, E = 9.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PL+aI+ y + ++ +la +++ + +++
CP000250_1 280 AMGEMASALAHELNQPLSAISNYMKGSRR----LLADSSDPNVPKI- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e++ ++a r ++i++l+d+ ++
CP000250_1 322 ----------EHAMERAAEQALRAGQIIRRLRDFVARGES 351

CP000250_0060: domain 1 of 1, from 210 to 274: score 36.7, E = 5.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HEL TPL++I + + L++ ++++e
CP000250_0 210 QIDGLAAAAAHELGTPLSTIFLISRELEK----------TAPPEM-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+t++++a+r+++++ + l ++a+
CP000250_0 245 ----------AGDLKTLREQAQRCREILAKISHLNAAGAP 274

CP000250_0035: domain 1 of 1, from 536 to 602: score 36.2, E = 7.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H+L++ Lt++ g +e+L e + + + +
CP000250_0 536 AIGQLTGGVAHDLNNILTVLTGGIEILAE---------GVSDRPAL- 572

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++++ r ++L n lL ++r +
CP000250_0 573 ----------RDVALMVDQAVTRASDLTNGLLSFARKQPL 602

CP000250_1956: domain 1 of 1, from 229 to 287: score 35.7, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ la++ H+LRTP+t +r+ +e +++
CP000250_1 229 DRTRTLAAIGHDLRTPITRLRLRSEFIED------------------ 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +lr++++++++++ +L + r +
CP000250_1 258 ----------ATQRDNMLRDLDQMRSMLDAVLSFLRTGRA 287

CP000250_4637: domain 1 of 1, from 349 to 418: score 35.3, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e l +++H+L++PL +I+g +e+L e ++ s+++
CP000250_4 349 FKNEILGTVAHDLKNPLGVILGRTEMLTELI-------GADSPKE-- 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+++++rl ++++ l + ++a
CP000250_4 387 --------NVIAQVDHIREATRRLTSMVDHLISDAMADAF 418

CP000250_3579: domain 1 of 1, from 538 to 604: score 34.4, E = 2.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g+ae+Ll+el +++++
CP000250_3 538 AIGQLTGGVAHDFNNMLTVINGTAEILLDEL-------ADRPDLC-- 575

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+++a r +L ++lL ++r +
CP000250_3 576 -----------SIARMIEQAAGRGADLTRQLLAFARRQPL 604

CP000250_3753: domain 1 of 1, from 493 to 559: score 32.9, E = 6.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L+aI+++ + Ll+ ++ +++
CP000250_3 493 TIGQLAGGIAHDFNNVLSAIMMANDFLLN--------AHKPTDPS-- 529

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a r L+++lL +sr ++
CP000250_3 530 ----------FQDIMQIKQNATRAATLVRQLLAFSRKQTL 559

CP000250_2142: domain 1 of 1, from 275 to 341: score 32.1, E = 1.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++H++++ Lt+I g+ae L + + + +++
CP000250_2 275 IVGQLSGGIAHDFNNLLTVIVGNAEFLAD---------QLKARQDL- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + i r+++r +L ++lL +sr ++
CP000250_2 312 ----------RGLACEISRAGQRGAELTQRLLAFSRRQTL 341

CP000250_4421: domain 1 of 1, from 519 to 587: score 30.6, E = 2.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +sH+++ PL I ++a lL e e+++e +
CP000250_4 519 ELEAFANVASHDIKEPLRHIEAFAGLLGESI-------REMGDERL- 557

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+++++rl+ Lindl ++s+++
CP000250_4 558 ----------GLMVSGIEKSSQRLRILINDLAEFSQLGRR 587

CP000250_4422: domain 1 of 1, from 538 to 606: score 30.4, E = 3.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++H+L+ PL I ++a lL + l +e ++
CP000250_4 538 ELESFAYVAAHDLKEPLRHIEAFAGLLSD----------LLAPEAKA 574

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i+ +++rl++Lindl ++sr + +
CP000250_4 575 KL--------NVMVSGIEASSRRLRALINDLAEYSRVGRQ 606

CP000250_0544: domain 1 of 1, from 668 to 734: score 28.9, E = 8.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ Lt+I g+++++ + + + +++
CP000250_0 668 SIGQLTGGIAHDFNNMLTVITGTIDIISD---------GVAEQPHL- 704

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i ++a+r +L + lL ++r +
CP000250_0 705 ----------ANIAKLISEAADRGAELTRLLLAFARKQPL 734

CP000250_3253: domain 1 of 1, from 339 to 404: score 28.9, E = 8.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++H++++ L ++ g ++ L++ + + ++
CP000250_3 339 SLGRLTGGVAHDFNNLLMVVGGSVQKLRR---------RHHDLQD-- 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ i++++ L ++lL +sr +
CP000250_3 375 ----------RRTFDMIDSAVAKGAGLTRQLLSFSRRHNV 404


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-14 12 0|=
-13 47 3|*==
-12 184 107|======*=====
-11 421 555|=========================== *
-10 819 1029|==================================================== *
-9 923 1063|==========================================================*
-8 831 796|=================================================*==
-7 588 501|===============================*=====
-6 331 288|=================*===
-5 218 158|=========*====
-4 116 84|=====*==
-3 63 44|==*=
-2 34 23|=*=
-1 18 12|*=
0 16 6|*
1 4 3|*
2 6 1|*
3 2 0|=
4 0 0|
> 5 50 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 234.9824
P(chi-square) = 3.475e-313

Total sequences searched: 4683

Whole sequence top hits:
tophits_s report:
Total hits: 40
Satisfying E cutoff: 40
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 40
Satisfying E cutoff: 40
Total memory: 37K


Acknowledgements:

This research is funded by:

Developed by: