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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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35 projects found  

1 accessions found for Syntrophus aciditrophicus SB  

Data for CP000252  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000252.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000252_3078 CDS_3095315-3093264 99.6 5.5e-28 1
CP000252_1493 CDS_1533654-1535405 90.5 2.1e-25 1
CP000252_2794 CDS_2808145-2811012 86.4 3e-24 1
CP000252_1849 CDS_1924907-1923063 70.0 1.3e-19 1
CP000252_0119 CDS_123264-121483 68.5 3.5e-19 1
CP000252_2694 CDS_2718597-2720108 60.9 5e-17 1
CP000252_0967 CDS_1002795-1004042 57.5 4.5e-16 1
CP000252_1478 CDS_1517372-1519102 56.4 9.6e-16 1
CP000252_3044 CDS_3055427-3057034 56.4 9.7e-16 1
CP000252_2982 CDS_2994796-2993276 52.9 9.2e-15 1
CP000252_0944 CDS_979407-981629 47.6 2.9e-13 1
CP000252_1101 CDS_1127799-1130057 43.8 3.5e-12 1
CP000252_1116 CDS_1142901-1144850 40.1 4e-11 1
CP000252_0117 CDS_120026-117870 39.3 6.4e-11 1
CP000252_0212 CDS_219617-217440 38.3 1.2e-10 1
CP000252_2796 CDS_2811427-2812923 36.4 4.5e-10 1
CP000252_0067 CDS_69415-71262 35.1 1e-09 1
CP000252_2753 CDS_2769528-2772011 29.0 5.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000252_3078 1/1 152 217 .. 1 87 [] 99.6 5.5e-28
CP000252_1493 1/1 356 423 .. 1 87 [] 90.5 2.1e-25
CP000252_2794 1/1 441 509 .. 1 87 [] 86.4 3e-24
CP000252_1849 1/1 384 455 .. 1 87 [] 70.0 1.3e-19
CP000252_0119 1/1 366 428 .. 1 83 [. 68.5 3.5e-19
CP000252_2694 1/1 278 344 .. 1 87 [] 60.9 5e-17
CP000252_0967 1/1 180 245 .. 1 87 [] 57.5 4.5e-16
CP000252_1478 1/1 341 407 .. 1 87 [] 56.4 9.6e-16
CP000252_3044 1/1 315 381 .. 1 87 [] 56.4 9.7e-16
CP000252_2982 1/1 291 352 .. 1 83 [. 52.9 9.2e-15
CP000252_0944 1/1 517 588 .. 1 87 [] 47.6 2.9e-13
CP000252_1101 1/1 524 598 .. 1 87 [] 43.8 3.5e-12
CP000252_1116 1/1 277 343 .. 1 87 [] 40.1 4e-11
CP000252_0117 1/1 344 410 .. 1 87 [] 39.3 6.4e-11
CP000252_0212 1/1 354 419 .. 1 87 [] 38.3 1.2e-10
CP000252_2796 1/1 15 83 .. 1 87 [] 36.4 4.5e-10
CP000252_0067 1/1 246 312 .. 1 87 [] 35.1 1e-09
CP000252_2753 1/1 744 810 .. 1 87 [] 29.0 5.6e-08

Alignments of top-scoring domains:
CP000252_3078: domain 1 of 1, from 152 to 217: score 99.6, E = 5.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP++aI+g+aelLle t+ls+eq
CP000252_3 152 AKSDFLASMSHEIRTPMHAILGMAELLLE---------TPLSPEQ-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e+ ++++e ll++ind+Ld+s+ eag
CP000252_3 188 ----------QRYVEIFRNAGENLLNIINDILDISKVEAG 217

CP000252_1493: domain 1 of 1, from 356 to 423: score 90.5, E = 2.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+ HE++TPLtaI+g++++Ll+ ++l++ +++
CP000252_1 356 IRTDFVANVTHEIKTPLTAIIGFLQTLLD---------GALDDRETA 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ti aerl+rL++dlL+ls ie +
CP000252_1 394 ----------RKFLQTIATNAERLSRLVDDLLTLSSIELN 423

CP000252_2794: domain 1 of 1, from 441 to 509: score 86.4, E = 3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHELRTPL+aI+gy+elL+ee+ +e++ +
CP000252_2 441 SKSAFLANMSHELRTPLNAIIGYSELLQEEA-------EEAGVNH-- 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i++++++ll Lind+Ldls+iea
CP000252_2 479 ---------FISALDRIHSAGKHLLGLINDILDLSKIEAS 509

CP000252_1849: domain 1 of 1, from 384 to 455: score 70.0, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE+R+PL+aI+++++ L++e+ ++ +e++
CP000252_1 384 SLGQLAAGVAHEIRNPLNAISMASQRLKREF-------MPAEPEKA- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ + +i++e++rl+ +i+++L++s+ +
CP000252_1 423 -------EEFQNMAGVIRDEIRRLNGIIEEFLTFSKSRRL 455

CP000252_0119: domain 1 of 1, from 366 to 428: score 68.5, E = 3.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HE+R+PL++I+g+a +L+e ++ ++e+
CP000252_0 366 AIGSLAAGVAHEIRNPLSSIKGFATVLRE--------RHRENPED-- 402

peLRledpeyreyletilreaerllrLindlLdlsr<-*
+++ +++++e+erl+r i +lL++sr
CP000252_0 403 ----------QRIADIMISEVERLNRVIGQLLEFSR 428

CP000252_2694: domain 1 of 1, from 278 to 344: score 60.9, E = 5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+l+H+L TPL++I g+++lLle ++e+++++
CP000252_2 278 ALGYLTATLAHDLGTPLHSIAGMTQLLLE--------RDEWPPDT-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le il++++rl+ i++++ +r+ ++
CP000252_2 315 ----------ARKLELILQQTQRLNTVIQNVRRATRLPEP 344

CP000252_0967: domain 1 of 1, from 180 to 245: score 57.5, E = 4.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++an++HE+R+PL +I +ya+lL + + +++ +
CP000252_0 180 ALGEMAANIAHEIRNPLGSIELYASLLMK---------ESKNDRD-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+++++ +++ i++lL +++ +
CP000252_0 216 ----------QNRISRIISSVKKMDNKISNLLLFTKNRKL 245

CP000252_1478: domain 1 of 1, from 341 to 407: score 56.4, E = 9.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a+l+HE+R+PL+aI+g +++L+++l +l++ +
CP000252_1 341 FIGEMAAGLAHEIRNPLAAISGSIHMLKKDL--------KLDPTD-- 377

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ilr ++l++ d+L l++ ag
CP000252_1 378 ----------ERLMKIILRGKDQLENFMKDFLLLAKPAAG 407

CP000252_3044: domain 1 of 1, from 315 to 381: score 56.4, E = 9.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +l+HE+R+PL++I++ + +Ll+ + + + +
CP000252_3 315 HIGQLTTSLAHEIRNPLSSIKMSIRMLLK--------SMDFDGDN-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+++re+ +l+r++ ++Ld++r
CP000252_3 352 ----------KKTLEIADREISHLERILTEMLDFARPVKL 381

CP000252_2982: domain 1 of 1, from 291 to 352: score 52.9, E = 9.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ l+HE+++PL +I+g+a+ L + e ++e++
CP000252_2 291 MLEEMAPVLAHEIKNPLGSIKGAAQYLAT----------EIDSEEN- 326

peLRledpeyreyletilreaerllrLindlLdlsr<-*
r++l++i++e++rl+ +++L +++
CP000252_2 327 ----------RKILNVIIEETDRLNGVMSQFLNYAK 352

CP000252_0944: domain 1 of 1, from 517 to 588: score 47.6, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ ++HE+++PLt I++ a+ L++++ +e+ +e+ +
CP000252_0 517 AWREVARRMAHEIKNPLTPIQLSAQRLQRKY-------GERLAEDGA 556

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ti++++e l +L+n++ ++r+
CP000252_0 557 VF--------YECTRTIIDQVEILKNLVNEFFRYARMPVT 588

CP000252_1101: domain 1 of 1, from 524 to 598: score 43.8, E = 3.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HEL++PL++ ++++ e t s e +
CP000252_1 524 AIGQLVAGAAHELNNPLSSAYSLTQTTVE---------TIGSWENVK 561

peLR.ledpeyreyletilreaerllrLindlLdlsrieag<-*
eLR++ + + l+ lre +r +++++ lLdlsr ++
CP000252_1 562 IELRnE----VLDDLDFSLREMRRARDIVRSLLDLSRQTQN 598

CP000252_1116: domain 1 of 1, from 277 to 343: score 40.1, E = 4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ +++H+L++ L ++ gy+elL e t ++ +
CP000252_1 277 GLGRLAGGVAHDLNNVLGVLVGYSELLAE---------TVPGDSPL- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + il+++ r ++++dlL+l+r +
CP000252_1 314 ----------KRYAKNILQSGMRGAAIVQDLLTLARRGVV 343

CP000252_0117: domain 1 of 1, from 344 to 410: score 39.3, E = 6.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H+L++ L ++ gy+elLl +++++
CP000252_0 344 ALGVMAGGVAHDLNNILGVLVGYSELLLL----------KMPADSP- 379

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr + il++++ ++i+dlL l+r e
CP000252_0 380 ---------YRGHIANILESGKKSAAIIQDLLALTRREVA 410

CP000252_0212: domain 1 of 1, from 354 to 419: score 38.3, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L aI+gyae+ l +l+ +
CP000252_0 354 AIGTLAGGIAHDFNNILGAIIGYAEITLHGLY----------DSP-- 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r le+i+r +er +L++++L++sr
CP000252_0 389 ---------WRPKLERIIRISERAKDLVQQILTFSRHSDH 419

CP000252_2796: domain 1 of 1, from 15 to 83: score 36.4, E = 4.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + la+++HELR P++aI+gy+e+ l+ + s +
CP000252_2 15 SPQAILAHIRHELRGPINAILGYSEMWLN----------DDSLRAI- 50

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+ + +++ ++ +l++Li+d+Ld ++ +
CP000252_2 51 -------PNLHANMAKLHAAGLQLRSLIRDILDPAKHDGR 83

CP000252_0067: domain 1 of 1, from 246 to 312: score 35.1, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L +I+g++el+l + +
CP000252_0 246 AIGTLAGGIAHDFNNILGGIMGFTELALL---------DIPEGSPA- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ l++ +r +++n++L + r +g
CP000252_0 283 ----------CLNLKQSLKAQHRAIEMVNQILAFGRQTEG 312

CP000252_2753: domain 1 of 1, from 744 to 810: score 29.0, E = 5.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ ++ HE+++P+ +++gy++lLl ++ + ++
CP000252_2 744 SILNMAGTICHEFNQPMQVLSGYIDLLLS---------RAWEDSKV- 780

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i++++ r+ ++ + l++l +
CP000252_2 781 ----------HGSLLKIKEQTARMTQITRKLMTLNDPSVQ 810


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 17 0|==
-13 67 2|*======
-12 232 72|=======*================
-11 343 375|=================================== *
-10 512 696|==================================================== *
-9 535 719|====================================================== *
-8 508 538|=================================================== *
-7 372 339|=================================*====
-6 247 195|===================*=====
-5 127 107|==========*==
-4 79 57|=====*==
-3 51 30|==*===
-2 27 15|=*=
-1 12 8|*=
0 8 4|*
1 3 2|*
2 1 1|*
3 1 0|=
4 0 0|
5 0 0|
6 2 0|=
7 0 0|
8 0 0|
> 9 24 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 504.7100
P(chi-square) = 0

Total sequences searched: 3168

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: