hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000264.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000264_3564 CDS_3630254-3628470 88.1 7.2e-25 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000264_3564 1/1 378 430 .. 1 58 [. 88.1 7.2e-25
Alignments of top-scoring domains:
CP000264_3564: domain 1 of 1, from 378 to 430: score 88.1, E = 7.2e-25
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+I+S+L++Q r++ d ++ + +Lr q+RV+S
CP000264_3 378 EVHHRVKNNLQLIASILNMQMRSVPDGDA-----RRVLRRVQDRVMS 419
mAliHEeLYks<-*
++iH+ LY++
CP000264_3 420 LSTIHKALYTG 430
Histogram of all scores:
score obs exp (one = represents 21 sequences)
----- --- ---
-15 2 0|=
-14 14 0|=
-13 53 26|=*=
-12 221 276|=========== *
-11 1188 770|====================================*====================
-10 1041 996|===============================================*==
-9 667 841|================================ *
-8 464 564|======================= *
-7 219 335|=========== *
-6 195 186|========*=
-5 64 100|====*
-4 32 53|==*
-3 28 27|=*
-2 10 14|*
-1 8 7|*
0 0 3|*
1 1 2|*
2 2 1|*
3 0 0|
> 4 3 -|=
% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 384.9642
P(chi-square) = 0
Total sequences searched: 4212
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
