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Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Janthinobacterium sp. Marseille  

Data for CP000269  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000269.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000269_2285 CDS_2559721-2558390 84.6 1.1e-23 1
CP000269_0864 CDS_980296-982404 82.2 5.4e-23 1
CP000269_1892 CDS_2124592-2121302 80.9 1.2e-22 2
CP000269_0616 CDS_699526-702372 73.2 1.9e-20 1
CP000269_0024 CDS_33838-35229 72.9 2.4e-20 1
CP000269_1820 CDS_2053795-2051069 71.5 5.9e-20 1
CP000269_1080 CDS_1217878-1218915 69.4 2.3e-19 1
CP000269_1665 CDS_1881731-1883530 69.2 2.5e-19 1
CP000269_2921 CDS_3278033-3276621 68.1 5.3e-19 1
CP000269_2982 CDS_3346226-3344526 65.3 3.2e-18 1
CP000269_2864 CDS_3214424-3216058 62.7 1.8e-17 1
CP000269_0793 CDS_893714-892272 59.3 1.7e-16 1
CP000269_1721 CDS_1950992-1949616 58.0 3.8e-16 1
CP000269_1658 CDS_1872982-1871603 57.2 6.7e-16 1
CP000269_3229 CDS_3600903-3602186 53.9 5.8e-15 1
CP000269_2353 CDS_2639215-2637815 52.2 1.7e-14 1
CP000269_0156 CDS_170489-168198 50.4 5.4e-14 1
CP000269_3176 CDS_3549503-3550753 45.8 1.1e-12 1
CP000269_3062 CDS_3429494-3428157 45.0 1.9e-12 1
CP000269_3512 CDS_3905190-3907220 44.0 3.7e-12 1
CP000269_3674 CDS_4079852-4081867 42.9 7.4e-12 1
CP000269_1412 CDS_1603646-1602279 42.3 1.1e-11 1
CP000269_0468 CDS_518859-516823 42.1 1.2e-11 1
CP000269_0058 CDS_71674-70430 39.7 5.8e-11 1
CP000269_2908 CDS_3261762-3259996 34.9 1.3e-09 1
CP000269_3325 CDS_3701972-3700668 29.9 3.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000269_2285 1/1 205 272 .. 1 87 [] 84.6 1.1e-23
CP000269_0864 1/1 331 396 .. 1 87 [] 82.2 5.4e-23
CP000269_1892 1/2 646 712 .. 1 87 [] 80.0 2.3e-22
CP000269_0616 1/1 473 538 .. 1 87 [] 73.2 1.9e-20
CP000269_0024 1/1 241 307 .. 1 87 [] 72.9 2.4e-20
CP000269_1820 1/1 670 737 .. 1 87 [] 71.5 5.9e-20
CP000269_1080 1/1 118 186 .. 1 87 [] 69.4 2.3e-19
CP000269_1665 1/1 226 291 .. 1 87 [] 69.2 2.5e-19
CP000269_2921 1/1 246 311 .. 1 87 [] 68.1 5.3e-19
CP000269_2982 1/1 345 410 .. 1 87 [] 65.3 3.2e-18
CP000269_2864 1/1 306 371 .. 1 87 [] 62.7 1.8e-17
CP000269_0793 1/1 257 323 .. 1 87 [] 59.3 1.7e-16
CP000269_1721 1/1 235 301 .. 1 87 [] 58.0 3.8e-16
CP000269_1658 1/1 96 162 .. 1 87 [] 57.2 6.7e-16
CP000269_3229 1/1 222 283 .. 1 87 [] 53.9 5.8e-15
CP000269_2353 1/1 246 312 .. 1 87 [] 52.2 1.7e-14
CP000269_0156 1/1 527 599 .. 1 87 [] 50.4 5.4e-14
CP000269_3176 1/1 201 267 .. 1 87 [] 45.8 1.1e-12
CP000269_3062 1/1 225 289 .. 1 87 [] 45.0 1.9e-12
CP000269_3512 1/1 441 508 .. 1 87 [] 44.0 3.7e-12
CP000269_3674 1/1 451 518 .. 1 87 [] 42.9 7.4e-12
CP000269_1412 1/1 234 293 .. 1 87 [] 42.3 1.1e-11
CP000269_0468 1/1 435 510 .. 1 87 [] 42.1 1.2e-11
CP000269_0058 1/1 201 259 .. 1 75 [. 39.7 5.8e-11
CP000269_2908 1/1 221 291 .. 1 87 [] 34.9 1.3e-09
CP000269_3325 1/1 230 288 .. 1 87 [] 29.9 3.6e-08

Alignments of top-scoring domains:
CP000269_2285: domain 1 of 1, from 205 to 272: score 84.6, E = 1.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+I g++e+++ ++l+++ r
CP000269_2 205 MRRDFIANASHELRTPLTVINGFLEIAQG--------QPNLDPDVR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++++++r+++L++d+L+l+r+e+
CP000269_2 243 ----------MSHLNLMIEQGKRMQNLVEDMLTLTRLESI 272

CP000269_0864: domain 1 of 1, from 331 to 396: score 82.2, E = 5.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla +sHE+RTP+++++g+ +l+l+ e s+ ++
CP000269_0 331 AKSEFLAVMSHEIRTPMNGMLGMMQLALA----------ETSDRTQ- 366

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re let++ +ae ll+++nd+Ld+s++e+g
CP000269_0 367 ----------REHLETAQYSAEALLSILNDILDFSKLESG 396

CP000269_1892: domain 1 of 2, from 646 to 712: score 80.0, E = 2.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++ +a++sHELR PL++I+gy+++Ll++ + l++
CP000269_1 646 AKTRYVAGISHELRSPLNSILGYSQILLKN--------EQLDAAP-- 682

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ti+r++e+ll L+++lLdl+riea
CP000269_1 683 ----------RTAIQTIQRSGEHLLGLVDELLDLARIEAD 712

CP000269_0616: domain 1 of 1, from 473 to 538: score 73.2, E = 1.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL++++g++el t+ +++q
CP000269_0 473 AKTLFLTTMSHELRTPLHGLLGALELFSL---------TAVTDQQ-- 508

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+ +++++ ll+ +++ Ld++rieag
CP000269_0 509 ----------RMYLHAMQQSSSILLKTVSQTLDIARIEAG 538

CP000269_0024: domain 1 of 1, from 241 to 307: score 72.9, E = 2.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTPL ++g ++++l e+s+e++
CP000269_0 241 QLSTFNADVAHELRTPLGNLIGQTQVMLS---------RERSAEEL- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++ l+e+erl+ +ind+L l++++ g
CP000269_0 278 ----------TEVLQSNLEELERLRTIINDMLFLAQADRG 307

CP000269_1820: domain 1 of 1, from 670 to 737: score 71.5, E = 5.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLta+ g++e L + + +el + q
CP000269_1 670 LRNSLLAAISHDLRTPLTALVGLSESLTR-------SKPELAAAQ-- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + +++ea r+ +L+ +lLd++ri++g
CP000269_1 708 ----------QELAHALHEEALRMGNLVTNLLDMARIQSG 737

CP000269_1080: domain 1 of 1, from 118 to 186: score 69.4, E = 2.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL++ el+e ++
CP000269_1 118 ANKELIRNLAHEIKNPLGGIRGAAQLLEM----------ELPERHL- 153

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+rey+++i++ea+rl+ L+++lL r +
CP000269_1 154 -------KEFREYTQVIIKEADRLQTLVDRLLAPHRSPHI 186

CP000269_1665: domain 1 of 1, from 226 to 291: score 69.2, E = 2.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+P++a+++y+ +L+e + l+++
CP000269_1 226 AKSQFLAAASHDLRQPVHALSLYVGVLRE---------QSLNAKS-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ i+r++ + rL + lL +sr++ag
CP000269_1 262 ----------RQLVDHIERATAAMGRLFDGLLNISRLDAG 291

CP000269_2921: domain 1 of 1, from 246 to 311: score 68.1, E = 5.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+ +H+LRTP+++++++ael+l+ e ++ q+
CP000269_2 246 FQGRFIADTAHQLRTPVAGLKAHAELALR----------ETDPVQV- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ +aerl+rL+++lL l+r e +
CP000269_2 282 ----------KRALGHLYTSAERLSRLVSQLLSLARNEPN 311

CP000269_2982: domain 1 of 1, from 345 to 410: score 65.3, E = 3.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE R+PL+aI +++lL+e +els+ q
CP000269_2 345 SMGRLTASIAHEVRNPLSAIGHATSLLKE---------DELSAGQ-- 380

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++ + + rl+r+i+d+L lsr ++
CP000269_2 381 ----------QRLLSIVSDNVARLNRMIEDILKLSRKAHQ 410

CP000269_2864: domain 1 of 1, from 306 to 371: score 62.7, E = 1.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ +el+l+ ++ e
CP000269_2 306 VQKRFIADAAHQMKTPLAGMRMQSELALR---------QTDQVEI-- 341

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le + +++++ r+in+lL l+r+e++
CP000269_2 342 ----------HKSLEQLAKSSKSATRMINQLLALARAENQ 371

CP000269_0793: domain 1 of 1, from 257 to 323: score 59.3, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f a+++HELRTP+t + + +e++l + +s+ +
CP000269_0 257 KLANFSADIAHELRTPVTNLVMQTEVALS---------QSRSSAE-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l + l+e er++r+i+d+L l++ e+
CP000269_0 293 ---------YREILYSNLEEFERMSRMISDMLFLAQTEND 323

CP000269_1721: domain 1 of 1, from 235 to 301: score 58.0, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef a+l+HELRTP++ +++ +++ l+ + +s+ +
CP000269_1 235 RLTEFSADLAHELRTPISNMLTQTHVVLN---------QSRSAAD-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ l++ +e++rl + i+d+L l++ e+g
CP000269_1 271 ---------YRDSLSSNAEELQRLGKTISDMLFLAQTENG 301

CP000269_1658: domain 1 of 1, from 96 to 162: score 57.2, E = 6.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efl++l+HELR+PL+ I ++a+lL + ++t+ +
CP000269_1 96 RQEEFLSMLAHELRNPLAPIAMAADLLGK-------ISTAHPLLP-- 133

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i r++ ++ +L++dl d sr +g
CP000269_1 134 -----------KLHGIISRQVSHMAHLVDDLVDASRVSTG 162

CP000269_3229: domain 1 of 1, from 222 to 283: score 53.9, E = 5.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +lan+sHELR PL+ Ir+++el+ + + q
CP000269_3 222 AQKALLANASHELRSPLARIRMAVELMAA-------------DAQ-- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + ++r + l++Li+++L sr++a
CP000269_3 254 ----------PEMRNELKRNIGELDQLIDEILLASRLDAT 283

CP000269_2353: domain 1 of 1, from 246 to 312: score 52.2, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f a+l+H+LRTPL+ ++ ++++l +++s e+
CP000269_2 246 RLSQFSADLAHDLRTPLNNLMVQTQVALV---------QARSVED-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l + +e erl r+++ +L l+r e+
CP000269_2 282 ---------YQGLLISNVEEYERLTRMVESMLFLARVEHT 312

CP000269_0156: domain 1 of 1, from 527 to 599: score 50.4, E = 5.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L ++l+ ++l+e ++
CP000269_0 527 AWGEVARRLAHEIKNPLTPIQLSAERLHMKLE------GKLNEADAK 567

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +eti +++ + r+++d++d+++
CP000269_0 568 VL--------ERSTETIVNQVTAMKRMVDDFRDYAKTPPA 599

CP000269_3176: domain 1 of 1, from 201 to 267: score 45.8, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTPLt I+g+aelL e ++++ + +
CP000269_3 201 RERFFTGDVSHELRTPLTIIIGAAELLVE---------QTADQPAL- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i r+a+ + ++ lL l+r
CP000269_3 238 ----------QAPARRIMRAAKEATDCVSVLLLLARRPDT 267

CP000269_3062: domain 1 of 1, from 225 to 289: score 45.0, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +++HELRTPLt I +++++++ ++ ++ +
CP000269_3 225 QQRAFTDGAAHELRTPLTIIGTHLQVAKL---------STGTALE-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++++ ++rl++ +++++ l+r+++
CP000269_3 261 -----------VSLNSAEEGVRRLNHTLEQMMALARADSV 289

CP000269_3512: domain 1 of 1, from 441 to 508: score 44.0, E = 3.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL++I ++a+ + + ++e+++ ++
CP000269_3 441 EQQQFIAMVSHELRTPLAVIDAAAQNMTR--------EGEQGSAKA- 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+r++erl++L L +r+
CP000269_3 479 ----------PLRLEKIHRATERLSSLFTHYLSSERLKMF 508

CP000269_3674: domain 1 of 1, from 451 to 518: score 42.9, E = 7.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e +a+++HE+++P+++++g++++L++ + ++ +
CP000269_3 451 AIGEITAGVAHEINNPVAVLQGNLDVLRD--------TLGAAAKPV- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ +++++ r++ ++ lL+++ ++
CP000269_3 489 ----------QGELQLMDQQIYRINTIVTKLLQFASPGEF 518

CP000269_1412: domain 1 of 1, from 234 to 293: score 42.3, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ la++sH+LRTPL+ +++ +el + l+++
CP000269_1 234 DRAVVLAGISHDLRTPLARMQLEVEL------------AGLPADA-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++e+++++i ++Ld+++
CP000269_1 267 -------------RAGMQSDLEQMDAIIGQFLDYAKPSDS 293

CP000269_0468: domain 1 of 1, from 435 to 510: score 42.1, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e +++l+HEL++PL+aI+ y+ +l+ l +d + +e ++
CP000269_0 435 TMGEIASTLAHELNQPLAAISSYTTGALN----MLERDKSKAAEVNI 477

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L +le+++ +a+r ++i+ + ++ + +++
CP000269_0 478 DML-------THALEKAQAQAQRAGQIIRSVHTFVKKREP 510

CP000269_0058: domain 1 of 1, from 201 to 259: score 39.7, E = 5.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
f+ ++sHELRTPLt ++g++elL+++l + ++++++
CP000269_0 201 DEKLFTGDVSHELRTPLTIMLGASELLKTKL--------ADTPDELA 239

peLRledpeyreyletilreaerllrLi<-*
+ +++ +++ +++er +L+
CP000269_0 240 VA--------ERIRRVASEASERVGALL 259

CP000269_2908: domain 1 of 1, from 221 to 291: score 34.9, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+P +a+ +y+ +L++ + r+
CP000269_2 221 SKSQFLAAASHDLRQPTHALGLYIATLRA---------LCNAPTVRA 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++ +++ l +L++ lLd+s+++ag
CP000269_2 259 EEV-------GNIAGKLQAALKGLVQLLDVLLDISKLDAG 291

CP000269_3325: domain 1 of 1, from 230 to 288: score 29.9, E = 3.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la++sH+L TP+t +r+ a+++ +
CP000269_3 230 ERMQILAAISHDLQTPITRMRMRADMMDD------------------ 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e++ ++++ ++ L+ + ++r +g
CP000269_3 259 ----------SEQREKLNHDLKEMEVLVKEGVAYARTLHG 288


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 35 2|*==
-12 154 84|======*=====
-11 339 438|=========================== *
-10 621 813|================================================ *
-9 739 839|========================================================= *
-8 649 628|================================================*=
-7 461 396|==============================*=====
-6 291 227|=================*=====
-5 169 125|=========*===
-4 81 66|=====*=
-3 48 35|==*=
-2 39 18|=*=
-1 13 9|*
0 11 5|*
1 5 2|*
2 0 1|*
3 2 0|=
4 1 0|=
5 0 0|
> 6 35 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 219.2952
P(chi-square) = 6.29e-310

Total sequences searched: 3697

Whole sequence top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: