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Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia xenovorans LB400  

Data for CP000270  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000270.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000270_3143 CDS_3516261-3514948 90.8 2.4e-25 1
CP000270_0394 CDS_434895-439367 90.5 2.8e-25 1
CP000270_1195 CDS_1345788-1348622 74.9 7.6e-21 1
CP000270_1478 CDS_1650097-1648691 66.0 2.5e-18 1
CP000270_3727 CDS_4143741-4145288 66.0 2.6e-18 1
CP000270_2402 CDS_2688545-2686572 63.9 9.9e-18 2
CP000270_2893 CDS_3234536-3233394 61.8 3.8e-17 1
CP000270_2115 CDS_2348869-2350842 60.9 7.2e-17 1
CP000270_4382 CDS_4838896-4840398 53.9 6.7e-15 1
CP000270_0990 CDS_1111929-1110568 53.0 1.2e-14 1
CP000270_4153 CDS_4596771-4598519 51.9 2.5e-14 1
CP000270_3696 CDS_4110980-4109679 51.4 3.5e-14 1
CP000270_1061 CDS_1189775-1191094 49.3 1.4e-13 1
CP000270_2365 CDS_2648495-2649898 47.0 6e-13 1
CP000270_0052 CDS_67891-70293 40.4 4.4e-11 1
CP000270_2124 CDS_2361559-2360210 39.6 7.4e-11 1
CP000270_0266 CDS_299563-301563 36.8 4.6e-10 1
CP000270_1550 CDS_1743143-1745065 33.7 3.7e-09 1
CP000270_2877 CDS_3211821-3214346 31.6 1.5e-08 1
CP000270_2692 CDS_3001545-3000190 30.3 3.3e-08 1
CP000270_1794 CDS_2026877-2029246 28.3 1.2e-07 1
CP000270_1824 CDS_2054351-2056720 28.3 1.2e-07 1
CP000270_0079 CDS_97065-98375 27.6 2e-07 1
CP000270_1568 CDS_1759155-1760930 27.5 2e-07 1
CP000270_2113 CDS_2346593-2348203 26.9 3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000270_3143 1/1 206 272 .. 1 87 [] 90.8 2.4e-25
CP000270_0394 1/1 844 909 .. 1 87 [] 90.5 2.8e-25
CP000270_1195 1/1 680 745 .. 1 87 [] 74.9 7.6e-21
CP000270_1478 1/1 244 310 .. 1 87 [] 66.0 2.5e-18
CP000270_3727 1/1 278 343 .. 1 87 [] 66.0 2.6e-18
CP000270_2893 1/1 152 220 .. 1 87 [] 61.8 3.8e-17
CP000270_2402 2/2 286 352 .. 1 87 [] 61.4 5e-17
CP000270_2115 1/1 290 356 .. 1 87 [] 60.9 7.2e-17
CP000270_4382 1/1 237 302 .. 1 87 [] 53.9 6.7e-15
CP000270_0990 1/1 219 284 .. 1 87 [] 53.0 1.2e-14
CP000270_4153 1/1 214 280 .. 1 87 [] 51.9 2.5e-14
CP000270_3696 1/1 213 278 .. 1 87 [] 51.4 3.5e-14
CP000270_1061 1/1 219 277 .. 1 87 [] 49.3 1.4e-13
CP000270_2365 1/1 245 310 .. 1 87 [] 47.0 6e-13
CP000270_0052 1/1 534 606 .. 1 87 [] 40.4 4.4e-11
CP000270_2124 1/1 234 293 .. 1 87 [] 39.6 7.4e-11
CP000270_0266 1/1 419 481 .. 1 81 [. 36.8 4.6e-10
CP000270_1550 1/1 412 482 .. 1 87 [] 33.7 3.7e-09
CP000270_2877 1/1 591 661 .. 1 87 [] 31.6 1.5e-08
CP000270_2692 1/1 248 306 .. 1 87 [] 30.3 3.3e-08
CP000270_1794 1/1 280 346 .. 1 87 [] 28.3 1.2e-07
CP000270_1824 1/1 280 346 .. 1 87 [] 28.3 1.2e-07
CP000270_0079 1/1 201 270 .. 1 87 [] 27.6 2e-07
CP000270_1568 1/1 283 371 .. 1 87 [] 27.5 2e-07
CP000270_2113 1/1 283 371 .. 1 87 [] 26.9 3e-07

Alignments of top-scoring domains:
CP000270_3143: domain 1 of 1, from 206 to 272: score 90.8, E = 2.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+++e +lse +r
CP000270_3 206 MRRDFVANVSHELKTPLTVLSGFLETMRE---------LPLSEGER- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yle ++++a r++++++dlL l+++e
CP000270_3 243 ----------SRYLELMEQQASRMRHIVSDLLVLAKLEGD 272

CP000270_0394: domain 1 of 1, from 844 to 909: score 90.5, E = 2.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sHE+RTP+++++g++e+L++ t+l+ +q
CP000270_0 844 AKDDFFAMMSHEIRTPMNGVLGLVEVLER---------TPLNTDQ-- 879

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l i+++a ll++++dlLd+s+ieag
CP000270_0 880 ----------GEMLGMIHESAGALLQILDDLLDYSKIEAG 909

CP000270_1195: domain 1 of 1, from 680 to 745: score 74.9, E = 7.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLt+I g++++L ++ +
CP000270_1 680 LRNSLLSAISHDLRTPLTTIVGFSSMLAQ---------SPDAQPN-- 715

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e i++ea r+ ++ +lLd++r++ag
CP000270_1 716 ----------AELVEAIHEEALRMTGIVTNLLDMARLQAG 745

CP000270_1478: domain 1 of 1, from 244 to 310: score 66.0, E = 2.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f ++l+H++RTPLt +++ a+++l +++s+++
CP000270_1 244 RLTQFSSDLAHDMRTPLTNLLAEAQVALS---------QPRSADE-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +e+ +e +rl rLi+ +L l+r+++g
CP000270_1 280 ---------YRGVIESSVDEFQRLARLIDSMLFLARADSG 310

CP000270_3727: domain 1 of 1, from 278 to 343: score 66.0, E = 2.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+l+ +++s+e
CP000270_3 278 LQKRFIADAAHQMKTPLAGLRTQAELALR---------QDASAEV-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++e+ rL+ +lL l+r+e+
CP000270_3 314 ----------HRSLEQIATSSEHAARLVTQLLALARAENR 343

CP000270_2893: domain 1 of 1, from 152 to 220: score 61.8, E = 3.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++nl+HE+++PL +Irg+a+lL+ el+e qr
CP000270_2 152 VNKQLIRNLAHEIKNPLGGIRGAAQLLEF----------ELGERQR- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eL rey+++i++e++rl+ L+++lL+ r +
CP000270_2 188 DEL-------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 220

CP000270_2402: domain 2 of 2, from 286 to 352: score 61.4, E = 5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla+l+HELR+PL+ +r ++ +++ +t s+
CP000270_2 286 RMRQFLATLAHELRNPLAPVRNAIGVMQL--------ETGISPTL-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+r++ +l rL++dlLd ri ++
CP000270_2 323 ----------ARSRDLIDRQVTHLTRLVDDLLDVGRIMSN 352

CP000270_2115: domain 1 of 1, from 290 to 356: score 60.9, E = 7.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+lsHELRTPLt +++ a++L++ + ++q+
CP000270_2 290 AKDRFLAMLSHELRTPLTPVLAGASVLEM---------IPELPDQA- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i+r +e rLi+dlLdl+r +g
CP000270_2 327 ----------RASVRMIRRNVELEARLIDDLLDLTRVANG 356

CP000270_4382: domain 1 of 1, from 237 to 302: score 53.9, E = 6.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+LRTPLta++++ae + +++++q+
CP000270_4 237 GQRKFIADAAHQLRTPLTAVKLHAEQAAV----------ARDPQQT- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +a+r rL n+lL l+r+e g
CP000270_4 273 ----------LAAVRELRAAADRAVRLSNQLLSLARAEPG 302

CP000270_0990: domain 1 of 1, from 219 to 284: score 53.0, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a+++HELR PL+a+++ ++++ +++ t +++ ++
CP000270_0 219 AQRTFIADAAHELRSPLAALKLQLQAASKNG-------TLKDDGHT- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+ ++r+ rL+++lL+l+r +a
CP000270_0 258 -------------IGRIDTRLNRIIRLVQQLLTLAREDAL 284

CP000270_4153: domain 1 of 1, from 214 to 280: score 51.9, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+l HELR+PL I ++ ++++ ++ ++
CP000270_4 214 HQVDFIATLGHELRNPLGPIDSALAAAQK--------LAAGNPSV-- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l + r++++l rL++dlLd sri++g
CP000270_4 251 ----------LSALALANRQVRQLKRLVSDLLDASRIRHG 280

CP000270_3696: domain 1 of 1, from 213 to 278: score 51.4, E = 3.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++ +
CP000270_3 213 IQKAFVADAAHELRTPLAAVQIQAQLVAR---------AKDEAGR-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ + r rL ++lL l+r e
CP000270_3 249 ----------GEALADLQAGVTRATRLAEQLLALARSEPD 278

CP000270_1061: domain 1 of 1, from 219 to 277: score 49.3, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+L+TPL+ +r+ ae+++e
CP000270_1 219 DRAVMLAGVAHDLKTPLARLRLRAEMMEE------------------ 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + + r+++++ ++++++L ++ +a
CP000270_1 248 ----------VKMRDGVVRDVDSMTHIVDQFLVFAHDGAD 277

CP000270_2365: domain 1 of 1, from 245 to 310: score 47.0, E = 6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HEL+TPL+aI+ a+++l+ ++ + q
CP000270_2 245 RERAFTADAAHELKTPLAAIKVQAQVALA---------ETDEARQ-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e++ + ++r rL ++lL l+r++
CP000270_2 281 ----------RLAMERVVQGVDRSARLAEQLLLLARLDVH 310

CP000270_0052: domain 1 of 1, from 534 to 606: score 40.4, E = 4.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l ++ls+ + +
CP000270_0 534 AWGEVARRLAHEIKNPLTPIQLSAERLQMKLA------DKLSPSD-A 573

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++ ti +++ + +++++++d++r
CP000270_0 574 DVL-------KRGATTIVNQVAAMKQMVDNFRDYARTPPA 606

CP000270_2124: domain 1 of 1, from 234 to 293: score 39.6, E = 7.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
CP000270_2 234 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++ +i ++Ld++r +
CP000270_2 264 ----------QATKDAMVDDIEQMDMIIGRFLDYARPVQR 293

CP000270_0266: domain 1 of 1, from 419 to 481: score 36.8, E = 4.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+rg+++ + l + + +
CP000270_0 419 ALGQMAAGITHELNQPLAALRGFSDNTRVLL-------ERGDQVSA- 457

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i +er+ ++ n+l +
CP000270_0 458 ----------RENLEAIAALTERMGKITNQLKLF 481

CP000270_1550: domain 1 of 1, from 412 to 482: score 33.7, E = 3.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a+++HE +PL+aI++ e++l++l ++ + + e++
CP000270_1 412 ALGELSASIAHEVGQPLAAIITSGEACLRWL-----HRNPPNMEEI- 452

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +e+ r ++++++ l + +
CP000270_1 453 ----------EGCVTEMTSEGTRAAGIVQRVRRLMKGAPP 482

CP000270_2877: domain 1 of 1, from 591 to 661: score 31.6, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y++ + l +++ +++ +
CP000270_2 591 TMGEMASSLAHELNQPLAAINNYCSGTVA-----LVKSGRTTPDNL- 631

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+ ++a r +i +++++ + ++
CP000270_2 632 ----------LPVLEKTAQQAVRAGMIIKRIREFVKRSEP 661

CP000270_2692: domain 1 of 1, from 248 to 306: score 30.3, E = 3.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fla+++HE+ TPLt Irg +el e ++
CP000270_2 248 VQQQFLAAAAHEFQTPLTLIRGQIELQPE-------------IKE-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + re++ ++r++++lL l+ +
CP000270_2 280 -------------RDLLFREIDLMSRQVRQLLHLAEVSEA 306

CP000270_1794: domain 1 of 1, from 280 to 346: score 28.3, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L ++rg++elL++ ++++++s e
CP000270_1 280 AIGKLTGGVAHDFNNVLQVLRGNLELLEN-----RHRRDNWSVER-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++++er +L ++lL + r +a
CP000270_1 320 -------------LAHAIDAVERGAKLASQLLAFGRRQAL 346

CP000270_1824: domain 1 of 1, from 280 to 346: score 28.3, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L ++rg++elL++ ++++++s e
CP000270_1 280 AIGKLTGGVAHDFNNVLQVLRGNLELLEN-----RHRRDNWSVER-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++++er +L ++lL + r +a
CP000270_1 320 -------------LAHAIDAVERGAKLASQLLAFGRRQAL 346

CP000270_0079: domain 1 of 1, from 201 to 270: score 27.6, E = 2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +a+++HE+ TPL++I +++e L++ +++s++ ++
CP000270_0 201 ALGVQAATVAHEIGTPLSTIAMLSEELRD---------AARSDKGLA 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+ le ++++ + + + +l+ + a
CP000270_0 239 PY--------TADLELLEQQMALCTSALARLRSRASTSAS 270

CP000270_1568: domain 1 of 1, from 283 to 371: score 27.5, E = 2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sH+LR PL ++g+++ L + ++++
CP000270_1 283 ENEMFIYSVSHDLRAPLVNLQGFSKELIR------------ACDELR 317

peLR...l...........edpeyreyletilreaerllrLindlLdlsr
+ R+++l +++++ ++ d + e+l+ ++ ++ r +++i+ lL lsr
CP000270_1 318 VAVRessLaagtrqriervVDEDIGEALHYLQTAVLRASHIIDALLRLSR 367

ieag<-*
+
CP000270_1 368 VGRV 371

CP000270_2113: domain 1 of 1, from 283 to 371: score 26.9, E = 3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ ++sH+LR PL ++g+++ L+ + + +
CP000270_2 283 DNEMFIYSVSHDLRSPLVNLQGFSKELQV---------SCDELDSVV 320

peLRl...........edpeyreyletilreaerllrLindlLdlsriea
++ l++ ++++ + d+ +re l+ ++ ++ + ++i+ lL +sr++
CP000270_2 321 EAAKLpeaehrrmvhiLDGDVRESLQYLRAAVTQAAAIIEALLRISRAGR 370

g<-*

CP000270_2 371 L 371


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-14 8 0|=
-13 41 3|*==
-12 183 101|======*=====
-11 393 525|========================= *
-10 705 974|============================================= *
-9 892 1006|======================================================== *
-8 812 753|===============================================*===
-7 583 474|=============================*=======
-6 342 273|=================*====
-5 207 149|=========*===
-4 124 80|====*===
-3 47 42|==*
-2 25 22|=*
-1 17 11|*=
0 11 6|*
1 4 3|*
2 1 1|*
3 4 0|=
> 4 31 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 286.2526
P(chi-square) = 0

Total sequences searched: 4430

Whole sequence top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: