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Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia xenovorans LB400  

Data for CP000271  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000271.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000271_2754 CDS_3120116-3115161 88.7 6e-25 2
CP000271_1286 CDS_1477412-1473891 86.7 2.3e-24 1
CP000271_1772 CDS_2029778-2026194 79.5 2.5e-22 1
CP000271_0045 CDS_48549-52052 75.5 3.5e-21 1
CP000271_1606 CDS_1837563-1836103 71.8 3.9e-20 1
CP000271_0951 CDS_1089995-1091449 71.6 4.3e-20 1
CP000271_2276 CDS_2579981-2578536 71.0 6.3e-20 1
CP000271_0533 CDS_637612-635948 67.6 5.8e-19 1
CP000271_1683 CDS_1921293-1923623 66.6 1.2e-18 1
CP000271_2172 CDS_2463522-2465018 66.4 1.3e-18 1
CP000271_1186 CDS_1362266-1364254 65.5 2.3e-18 1
CP000271_1769 CDS_2024657-2023530 63.8 7.3e-18 1
CP000271_1250 CDS_1435009-1436409 59.8 9.6e-17 1
CP000271_1476 CDS_1694837-1690926 58.4 2.3e-16 1
CP000271_1229 CDS_1410503-1412344 54.2 3.7e-15 1
CP000271_1004 CDS_1152778-1151069 53.9 4.5e-15 1
CP000271_1940 CDS_2210342-2208924 52.5 1.1e-14 1
CP000271_2482 CDS_2830916-2829522 51.5 2.2e-14 1
CP000271_0415 CDS_480760-479102 43.7 3.4e-12 1
CP000271_0333 CDS_387089-388426 32.6 4.8e-09 1
CP000271_0157 CDS_181921-182727 31.6 9.2e-09 1
CP000271_1010 CDS_1163408-1164574 30.2 2.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000271_1286 1/1 718 785 .. 1 87 [] 86.7 2.3e-24
CP000271_1772 1/1 488 556 .. 1 87 [] 79.5 2.5e-22
CP000271_0045 1/1 541 606 .. 1 87 [] 75.5 3.5e-21
CP000271_1606 1/1 257 323 .. 1 87 [] 71.8 3.9e-20
CP000271_0951 1/1 234 300 .. 1 87 [] 71.6 4.3e-20
CP000271_2276 1/1 242 308 .. 1 87 [] 71.0 6.3e-20
CP000271_0533 1/1 194 258 .. 1 87 [] 67.6 5.8e-19
CP000271_1683 1/1 414 480 .. 1 87 [] 66.6 1.2e-18
CP000271_2172 1/1 266 334 .. 1 87 [] 66.4 1.3e-18
CP000271_1186 1/1 217 283 .. 1 87 [] 65.5 2.3e-18
CP000271_1769 1/1 146 211 .. 1 87 [] 63.8 7.3e-18
CP000271_2754 1/2 367 444 .. 1 87 [] 63.4 9.3e-18
CP000271_1250 1/1 246 312 .. 1 87 [] 59.8 9.6e-17
CP000271_1476 1/1 937 1003 .. 1 87 [] 58.4 2.3e-16
CP000271_1229 1/1 245 310 .. 1 87 [] 54.2 3.7e-15
CP000271_1004 1/1 191 257 .. 1 87 [] 53.9 4.5e-15
CP000271_1940 1/1 241 314 .. 1 87 [] 52.5 1.1e-14
CP000271_2482 1/1 236 302 .. 1 87 [] 51.5 2.2e-14
CP000271_0415 1/1 194 259 .. 1 87 [] 43.7 3.4e-12
CP000271_0333 1/1 223 291 .. 1 87 [] 32.6 4.8e-09
CP000271_0157 1/1 35 102 .. 1 87 [] 31.6 9.2e-09
CP000271_1010 1/1 141 204 .. 1 78 [. 30.2 2.3e-08

Alignments of top-scoring domains:
CP000271_1286: domain 1 of 1, from 718 to 785: score 86.7, E = 2.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELRTPL++I+gya+lLl g +el++
CP000271_1 718 AKSRYVTGLSHELRTPLNSILGYAQLLLQ-------GTDELPPAR-- 755

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ ti+r++e+ll+L++ lLd +rieag
CP000271_1 756 ----------RNAVATIYRSGEHLLALVDGLLDVARIEAG 785

CP000271_1772: domain 1 of 1, from 488 to 556: score 79.5, E = 2.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL+ + ++l+eeq
CP000271_1 488 YKSEFLANMSHELRTPLNSSLILAKLLQQ------NRAGNLTEEQ-- 526

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y eti+ + ll Lind+Ldls+ eag
CP000271_1 527 ----------VRYAETIHASNSDLLVLINDILDLSKVEAG 556

CP000271_0045: domain 1 of 1, from 541 to 606: score 75.5, E = 3.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a++sHE+RTPL+a++g++el + t+ e +
CP000271_0 541 ARTNFFAAMSHEIRTPLNALLGNLELFAR---------TPGLEAH-- 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l t+ +++ l+r +nd+Ld+s+i+ag
CP000271_0 577 ----------SQRLATLSVASDALRRVVNDILDFSKIDAG 606

CP000271_1606: domain 1 of 1, from 257 to 323: score 71.8, E = 3.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+a+l+H++RTPL+ +rg+ae++l+ ++s ++
CP000271_1 257 RLSRFTADLAHDMRTPLSNMRGAAEVALA---------RPRSVDE-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ l + l+e +rl+++i+++L l+r+e++
CP000271_1 293 ---------YESVLASNLEECDRLSKMIENVLFLARAEHP 323

CP000271_0951: domain 1 of 1, from 234 to 300: score 71.6, E = 4.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTP+t ++g +e++l+ ++s +++
CP000271_0 234 RLESFNADVAHELRTPVTILIGQTEVALT---------RNRSVDDL- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++ l+e er++++ind+L l+r+++g
CP000271_0 271 ----------RHTLQSNLEEFERMRAIINDMLFLARADQG 300

CP000271_2276: domain 1 of 1, from 242 to 308: score 71.0, E = 6.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +nl+H++RTPLt ++++a+++l +++++e+
CP000271_2 242 RLSQFSSNLAHDMRTPLTNLLAAAQVALS---------QPRTAED-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ +e+ +e +rl+r+i+d+L l+r e+
CP000271_2 278 ---------YRDVIESSVDEYQRLSRMIEDMLFLARSEQA 308

CP000271_0533: domain 1 of 1, from 194 to 258: score 67.6, E = 5.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+aI++ +el+ +++s
CP000271_0 194 RKNEFLAMLAHELRNPLAAISLSLELAAQ---------ADRSRSG-- 229

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i r++ +l+r+++dlLd sr+ g
CP000271_0 230 -----------QAFAVIGRQTAQLSRMVEDLLDVSRLTRG 258

CP000271_1683: domain 1 of 1, from 414 to 480: score 66.6, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ +r +e+L+ e ++q+
CP000271_1 414 RKDEFLATLAHELRNPLAPMRNVLEILRL---------KEFADPQL- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +r+++++ +L++dlL+ sri +g
CP000271_1 451 ----------SWSRDVFDRQLQHMTHLVDDLLEVSRITQG 480

CP000271_2172: domain 1 of 1, from 266 to 334: score 66.4, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sH+LRTPLt++ gy+e+L ++ ++l++ +r
CP000271_2 266 QRRELIANISHDLRTPLTSLHGYLETLSLKS-------DTLGDTER- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ++l ++ rL + l +l+r+e+g
CP000271_2 305 ----------KRYLAIALAQSVKVGRLAQALFELARLEHG 334

CP000271_1186: domain 1 of 1, from 217 to 283: score 65.5, E = 2.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sH+LR+PL+aI ++a L + +++++ q+
CP000271_1 217 AKTRFFAAASHDLRQPLHAIGLLAASLND---------AAATPAQH- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e i +e l++L n++Ldl+r+e+g
CP000271_1 254 ----------AKTAEHIVYNVEALNQLFNQVLDLARLESG 283

CP000271_1769: domain 1 of 1, from 146 to 211: score 63.8, E = 7.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a lsH+LRTPL a+++ ae L + t+++e+
CP000271_1 146 ANEMLMAVLSHDLRTPLGAVLASAEYLMR---------TAADEQS-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ r+ r++++lL l+r++ g
CP000271_1 182 ----------VTVAARVKNSSLRMARMVDQLLNLARLQGG 211

CP000271_2754: domain 1 of 2, from 367 to 444: score 63.4, E = 9.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt ++g +e Ll+ +q
CP000271_2 367 AKTTFFSNISHEFRTPLTLMLGPLEELLA-------------KPQ-- 398

peLRl..........edpeyreyletilreaerllrLindlLdlsrieag
l ++++ + + d+e r ++e+ +r + rll+L+n lLd+srieag
CP000271_2 399 ----LaaggdnarvgSDIEDRALIEITHRNGLRLLKLVNALLDFSRIEAG 444

<-*

CP000271_2 - -

CP000271_1250: domain 1 of 1, from 246 to 312: score 59.8, E = 9.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f a+l+HE+RTP+ a++g +++ l+ ++ +e+
CP000271_1 246 RLSQFSADLAHEIRTPVGALIGQTQVTLA---------RTREPEE-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++le+ l+e+ rl+++ +++L l+ +++
CP000271_1 282 ---------YQQLLESNLEELSRLSHIAENILFLAHADHA 312

CP000271_1476: domain 1 of 1, from 937 to 1003: score 58.4, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l HELR+PL+a+ + +lL + ++ q+
CP000271_1 937 RKNEFLAMLGHELRNPLAALCSAGDLLAS---------ESVDARQK- 973

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i+r+++ + +L+n++Ldl+ri +g
CP000271_1 974 ----------VWAVGVIQRQGQAMTQLVNEMLDLTRIASG 1003

CP000271_1229: domain 1 of 1, from 245 to 310: score 54.2, E = 3.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL+aI +elL ++ se +
CP000271_1 245 AKDAFLGMISHELRTPLHAIVSSIELLGFNY---------HSEAD-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++++ +a++l+++ dl d++r++ag
CP000271_1 281 ----------RKVIQRLDTAARHLEAQMKDLTDYARLGAG 310

CP000271_1004: domain 1 of 1, from 191 to 257: score 53.9, E = 4.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ sef+a+l HELR+P++ I ++ +++ ++ +
CP000271_1 191 RHSEFIAMLGHELRNPMAPIDSAVGAAKQ---------LCADNARA- 227

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l +++r+ ++l+ L++dlLd +r+++g
CP000271_1 228 ----------VEVLTIAQRQMRHLRTLVDDLLDAARLRHG 257

CP000271_1940: domain 1 of 1, from 241 to 314: score 52.5, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +++H+L+TPL++I++ +el+l++ d + +++ s + r+
CP000271_1 241 SRRRFFNDAAHQLKTPLAVIQAESELALRDID---GMEAKSSGDRRQ 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ r++++ r++++lL lsr++a
CP000271_1 285 ----------GVHLRRLNRAVQHAVRIVQQLLSLSRLDAH 314

CP000271_2482: domain 1 of 1, from 236 to 302: score 51.5, E = 2.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLt + + ++ ++ ++ + +
CP000271_2 236 AQRRFIADAAHQLRTPLTLLGTQLQFARQ---------QDGLNPAL- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++r+ +++ L n lL l+++ea
CP000271_2 273 ----------DEALAAMHRSNRSMVGLTNKLLLLAQAEAA 302

CP000271_0415: domain 1 of 1, from 194 to 259: score 43.7, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L++I+ +ael+ + s+e +
CP000271_0 194 ALGQLTGGIAHDFNNLLNVIMVNAELIAR----------VSSDERL- 229

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + t++r++er +L +lL++sr +
CP000271_0 230 ----------RGMAATVKRATERGAKLTGQLLTFSRNSNL 259

CP000271_0333: domain 1 of 1, from 223 to 291: score 32.6, E = 4.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + a+l HE ++P++ ++++e++ e + ++++++ +
CP000271_0 223 AIGTLSAGLLHEVNNPVNFCLMAIEVAME-------EPQAKDSPSL- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +++ r++++++dl +++ g
CP000271_0 262 ----------QECLTDVKQGMLRIQHIVSDLKTFAYRKPG 291

CP000271_0157: domain 1 of 1, from 35 to 102: score 31.6, E = 9.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+ +sH+LR PL+aI a +L++ +l++ +
CP000271_0 35 MRDHVLSLVSHDLRGPLNAIHSWAYVLER----------KLDAND-- 69

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+ ++++ i++ +++ +L++ + d +r+e+
CP000271_0 70 -------PNAQRAVTGIRNGVDQQVKLLETIVDATRAETK 102

CP000271_1010: domain 1 of 1, from 141 to 204: score 30.2, E = 2.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e la l+HEL+TPL++I+++a ++++ + ++e +
CP000271_1 141 AMDETLAFLAHELNTPLATISLFARSVENDVA------AQYDPERQ- 180

peLRledpeyreyletilreaerllrLindl<-*
+e+ + ++l+ a+++l Li+ +
CP000271_1 181 -------REIGLAATSMLNNAQYCLTLISSF 204


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 4 0|=
-13 26 2|*==
-12 130 67|======*======
-11 277 350|============================ *
-10 457 650|============================================== *
-9 562 672|========================================================= *
-8 557 503|==================================================*=====
-7 369 317|===============================*=====
-6 246 182|==================*======
-5 136 100|=========*====
-4 74 53|=====*==
-3 43 28|==*==
-2 16 14|=*
-1 10 7|*
0 10 4|*
1 7 2|*
2 4 1|*
3 2 0|=
> 4 30 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 214.1028
P(chi-square) = 1.652e-309

Total sequences searched: 2960

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: