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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia xenovorans LB400  

Data for CP000271  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000271.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000271_2197 CDS_2489053-2490462 62.9 2.1e-18 1
CP000271_0551 CDS_655948-656958 41.7 3.9e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000271_2197 1/1 253 323 .. 1 70 [] 62.9 2.1e-18
CP000271_0551 1/1 119 186 .. 1 70 [] 41.7 3.9e-12

Alignments of top-scoring domains:
CP000271_2197: domain 1 of 1, from 253 to 323: score 62.9, E = 2.1e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ERaR++RELHD+++Q++ ++kl le a+++++ +++ ++a++al+
CP000271_2 253 ERARLSRELHDGISQMMVSVKLLLESALARFE-RSEVRvpAAEAALT 298

eirelarealaevRrllgdLRpaal<-*
+ + + ++l+evRr+ ++LRp+ l
CP000271_2 299 TSLTRLGDTLREVRRISHALRPSML 323

CP000271_0551: domain 1 of 1, from 119 to 186: score 41.7, E = 3.9e-12
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+++ARELHD++gQ L ai+l + ++r l + +e+ + +
CP000271_0 119 ERRHLARELHDELGQYLNAISLDAARIRDLS--SAREPEVHRVSLGL 163

relarealaevRrllgdLRpaal<-*
+ a++ ++++ ++++LRp +l
CP000271_0 164 IQSASHVYRQIGGMIRRLRPIGL 186


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 3 0|=
-13 31 0|====
-12 64 33|===*===
-11 116 271|============ *
-10 330 629|================================= *
-9 565 714|========================================================= *
-8 435 550|============================================ *
-7 441 346|==================================*==========
-6 309 196|===================*===========
-5 284 105|==========*==================
-4 159 54|=====*==========
-3 89 28|==*======
-2 68 14|=*=====
-1 27 7|*==
0 14 3|*=
1 14 1|*=
2 3 0|=
3 4 0|=
4 0 0|
> 5 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1291.3473
P(chi-square) = 0

Total sequences searched: 2960

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: