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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia xenovorans LB400  

Data for CP000272  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000272.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000272_0493 CDS_535106-539140 62.8 5.9e-18 1
CP000272_0070 CDS_81956-80250 55.8 5.7e-16 1
CP000272_0515 CDS_561279-560413 50.4 2e-14 1
CP000272_1300 CDS_1458122-1456737 49.1 4.7e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000272_0493 1/1 978 1044 .. 1 87 [] 62.8 5.9e-18
CP000272_0070 1/1 191 257 .. 1 87 [] 55.8 5.7e-16
CP000272_0515 1/1 54 120 .. 1 87 [] 50.4 2e-14
CP000272_1300 1/1 240 306 .. 1 87 [] 49.1 4.7e-14

Alignments of top-scoring domains:
CP000272_0493: domain 1 of 1, from 978 to 1044: score 62.8, E = 5.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l HELR+PL+a+ +lL ++ ++ q+
CP000272_0 978 RKNEFLAMLGHELRNPLAALCSSGDLLAS---------ETIDPRQK- 1014

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i+r+++++ +L+n++Ldl+ri +g
CP000272_0 1015 ----------SWAVGVIQRQGRSMTQLVNEMLDLTRITSG 1044

CP000272_0070: domain 1 of 1, from 191 to 257: score 55.8, E = 5.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ sef+a+l HELR+P++ I ++ +++ + e++
CP000272_0 191 RHSEFIAMLGHELRNPMAPIDSAVGAAKQ---------LCSDNEKA- 227

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l +++r+ ++l+ L++dlLd +r+ +g
CP000272_0 228 ----------VEVLTIAQRQMRHLRTLVDDLLDAARLKHG 257

CP000272_0515: domain 1 of 1, from 54 to 120: score 50.4, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++ la+++HELR PLt ++++++l+++ + ++ +++
CP000272_0 54 LKNQVLAMVAHELRGPLTPLQLATQLMRR---------ASADRPEV- 90

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i+r++ ++ rL +dl+d +ri+ +
CP000272_0 91 ----------LRSLDMIDRQIAQIARLAQDLMDATRIDRN 120

CP000272_1300: domain 1 of 1, from 240 to 306: score 49.1, E = 4.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++H+L TP+ ++g +e+ l ++++
CP000272_1 240 QLKQVSADMAHDLHTPIGNLLGQTEVGLS---------HPRDVAY-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l + ++e++rl+++i ++L l+r e+
CP000272_1 276 ---------YQRLLGSNYEELQRLSKMIANMLFLARSEQA 306


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-13 4 0|=
-12 55 29|=====*=====
-11 108 155|====================== *
-10 226 288|============================================== *
-9 272 297|======================================================= *
-8 241 223|============================================*====
-7 180 140|===========================*========
-6 98 80|===============*====
-5 54 44|========*==
-4 30 23|====*=
-3 16 12|==*=
-2 11 6|=*=
-1 3 3|*
0 5 1|*
1 1 0|=
2 1 0|=
3 0 0|
4 0 0|
> 5 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 74.9352
P(chi-square) = 4.898e-12

Total sequences searched: 1312

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: