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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

3 accessions found for Burkholderia xenovorans LB400  

Data for CP000272  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000272.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000272_0699 CDS_760243-761397 39.2 9.5e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000272_0699 1/1 162 232 .. 1 70 [] 39.2 9.5e-12

Alignments of top-scoring domains:
CP000272_0699: domain 1 of 1, from 162 to 232: score 39.2, E = 9.5e-12
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe...eareal
E RIARELHD +gQ+L+a+k+ l ++++l +++ + ++
CP000272_0 162 EQIRIARELHDDLGQQLAALKMALADLETIL--RDNGAiaaLTLTHT 206

deirelarealaevRrllgdLRpaal<-*
+ +++l++ + a +Rr++ +LRp +l
CP000272_0 207 KDMHHLIDVTVASLRRIAAGLRPIVL 232


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-13 16 0|====
-12 19 14|===*=
-11 44 120|=========== *
-10 133 279|================================== *
-9 234 316|==========================================================*
-8 211 244|===================================================== *
-7 192 153|======================================*=========
-6 164 86|=====================*===================
-5 127 46|===========*====================
-4 68 24|=====*===========
-3 34 12|==*======
-2 27 6|=*=====
-1 16 3|*===
0 8 1|*=
1 7 0|==
2 5 0|==
3 3 0|=
4 2 0|=
5 0 0|
6 0 0|
> 7 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 550.7532
P(chi-square) = 0

Total sequences searched: 1312

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: