Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP000283  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000283.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000283_1663 CDS_1880088-1875805 136.6 2.5e-38 2
CP000283_0405 CDS_472732-474684 93.3 4.6e-26 1
CP000283_1494 CDS_1669377-1666735 90.2 3.4e-25 1
CP000283_4055 CDS_4532762-4530132 89.9 4.2e-25 1
CP000283_2013 CDS_2264245-2261930 89.4 5.9e-25 1
CP000283_2041 CDS_2294634-2293042 82.8 4.4e-23 1
CP000283_1939 CDS_2181926-2183749 80.4 2.1e-22 1
CP000283_0885 CDS_999656-1001011 77.2 1.6e-21 1
CP000283_3846 CDS_4303889-4307257 76.3 3e-21 1
CP000283_1444 CDS_1618741-1615136 75.7 4.6e-21 1
CP000283_0663 CDS_749315-752038 74.7 8.5e-21 1
CP000283_0366 CDS_433595-435286 71.9 5.3e-20 1
CP000283_0207 CDS_237957-235444 71.5 7e-20 1
CP000283_2503 CDS_2810300-2813137 61.6 4.5e-17 1
CP000283_0835 CDS_942132-938626 61.4 4.9e-17 1
CP000283_4219 CDS_4711375-4709984 58.0 4.7e-16 1
CP000283_2578 CDS_2901035-2902207 51.0 4.3e-14 1
CP000283_0924 CDS_1044540-1045751 46.0 1.2e-12 1
CP000283_2008 CDS_2252006-2253478 44.6 3e-12 1
CP000283_2580 CDS_2903815-2906103 44.3 3.4e-12 1
CP000283_1867 CDS_2099252-2096442 42.3 1.3e-11 1
CP000283_3864 CDS_4323341-4321953 41.7 1.9e-11 1
CP000283_1341 CDS_1513158-1511626 38.8 1.3e-10 1
CP000283_0119 CDS_138127-135398 37.2 3.5e-10 1
CP000283_4352 CDS_4840295-4841947 36.9 4.3e-10 1
CP000283_3261 CDS_3630616-3633054 36.5 5.8e-10 1
CP000283_3073 CDS_3433929-3431386 35.8 9.2e-10 1
CP000283_0130 CDS_149441-150763 34.4 2.3e-09 1
CP000283_3321 CDS_3698808-3700937 33.7 3.6e-09 1
CP000283_1696 CDS_1914476-1917028 32.9 6.2e-09 1
CP000283_2393 CDS_2676970-2679300 31.9 1.2e-08 1
CP000283_2392 CDS_2674682-2676970 30.6 2.7e-08 1
CP000283_0284 CDS_326692-330009 30.2 3.6e-08 1
CP000283_1178 CDS_1338661-1340016 28.9 8e-08 1
CP000283_2339 CDS_2622860-2621445 27.6 1.9e-07 1
CP000283_2420 CDS_2709448-2707916 27.1 2.7e-07 2
CP000283_2191 CDS_2456609-2454492 26.9 2.9e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000283_0405 1/1 133 198 .. 1 87 [] 93.3 4.6e-26
CP000283_1494 1/1 339 404 .. 1 87 [] 90.2 3.4e-25
CP000283_4055 1/1 370 435 .. 1 87 [] 89.9 4.2e-25
CP000283_2013 1/1 538 607 .. 1 87 [] 89.4 5.9e-25
CP000283_2041 1/1 263 332 .. 1 87 [] 82.8 4.4e-23
CP000283_1939 1/1 352 421 .. 1 87 [] 80.4 2.1e-22
CP000283_0885 1/1 214 281 .. 1 87 [] 77.2 1.6e-21
CP000283_3846 1/1 672 738 .. 1 87 [] 76.3 3e-21
CP000283_1444 1/1 972 1041 .. 1 87 [] 75.7 4.6e-21
CP000283_0663 1/1 674 742 .. 1 87 [] 74.7 8.5e-21
CP000283_1663 1/2 359 425 .. 1 87 [] 73.6 1.8e-20
CP000283_0366 1/1 329 394 .. 1 87 [] 71.9 5.3e-20
CP000283_0207 1/1 605 673 .. 1 87 [] 71.5 7e-20
CP000283_1663 2/2 1058 1124 .. 1 87 [] 63.0 1.8e-17
CP000283_2503 1/1 453 518 .. 1 87 [] 61.6 4.5e-17
CP000283_0835 1/1 801 866 .. 1 87 [] 61.4 4.9e-17
CP000283_4219 1/1 230 295 .. 1 87 [] 58.0 4.7e-16
CP000283_2578 1/1 139 194 .. 1 78 [. 51.0 4.3e-14
CP000283_0924 1/1 32 97 .. 1 87 [] 46.0 1.2e-12
CP000283_2008 1/1 237 303 .. 1 87 [] 44.6 3e-12
CP000283_2580 1/1 507 578 .. 1 87 [] 44.3 3.4e-12
CP000283_1867 1/1 540 606 .. 1 87 [] 42.3 1.3e-11
CP000283_3864 1/1 259 317 .. 1 87 [] 41.7 1.9e-11
CP000283_1341 1/1 280 351 .. 1 87 [] 38.8 1.3e-10
CP000283_0119 1/1 534 600 .. 1 87 [] 37.2 3.5e-10
CP000283_4352 1/1 320 389 .. 1 87 [] 36.9 4.3e-10
CP000283_3261 1/1 438 504 .. 1 87 [] 36.5 5.8e-10
CP000283_3073 1/1 475 543 .. 1 87 [] 35.8 9.2e-10
CP000283_0130 1/1 210 274 .. 1 87 [] 34.4 2.3e-09
CP000283_3321 1/1 180 245 .. 1 87 [] 33.7 3.6e-09
CP000283_1696 1/1 466 532 .. 1 87 [] 32.9 6.2e-09
CP000283_2393 1/1 538 606 .. 1 87 [] 31.9 1.2e-08
CP000283_2392 1/1 519 587 .. 1 87 [] 30.6 2.7e-08
CP000283_0284 1/1 704 770 .. 1 87 [] 30.2 3.6e-08
CP000283_1178 1/1 207 302 .. 1 87 [] 28.9 8e-08
CP000283_2339 1/1 237 308 .. 1 87 [] 27.6 1.9e-07
CP000283_2191 1/1 339 404 .. 1 87 [] 26.9 2.9e-07

Alignments of top-scoring domains:
CP000283_0405: domain 1 of 1, from 133 to 198: score 93.3, E = 4.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++sHE+RTPL++I+g++ lLl+ t+l++eq
CP000283_0 133 AKSRLLAMASHEIRTPLNGIIGMSGLLLD---------TTLTPEQ-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ ++ +++ ll+Li++lLd+s+i+ag
CP000283_0 169 ----------ATYVRAVKTSGDALLSLIDELLDYSKIDAG 198

CP000283_1494: domain 1 of 1, from 339 to 404: score 90.2, E = 3.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHE+RTP++a++g+a+ Lle t+l +eq
CP000283_1 339 SKSNFLAMMSHEIRTPMNAVLGLASNLLE---------TKLAPEQ-- 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e i+++++ ll++++d+L++sr+eag
CP000283_1 375 ----------RRAVEGIHSSGDGLLKILDDILEYSRLEAG 404

CP000283_4055: domain 1 of 1, from 370 to 435: score 89.9, E = 4.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a Lle t+l+++q
CP000283_4 370 AKSGFLAMMSHEIRTPMNGVLGLANSLLE---------TKLDPDQ-- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ti+++++ llr++nd+Ldls++e g
CP000283_4 406 ----------QHAVATIRDSGDNLLRILNDILDLSKLEVG 435

CP000283_2013: domain 1 of 1, from 538 to 607: score 89.4, E = 5.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPL+aI+g++e++ +++ ++l++e+
CP000283_2 538 AKSKFLANMSHELRTPLNAIIGFSEIMGSGMF------GTLGSEK-- 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i ++++ll+ ind+Ld+s+ieag
CP000283_2 577 ---------YQEYCHDIMTSGHYLLEVINDILDMSKIEAG 607

CP000283_2041: domain 1 of 1, from 263 to 332: score 82.8, E = 4.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTPL+aI+g++e+++ + ++
CP000283_2 263 AKSRFLAQMSHELRTPLNAILGFSEVMKS---------EIFGAHA-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+p y++y i++++ +ll+Lin++Ldlsrieag
CP000283_2 299 ------VPVYKDYSADIHNSGVHLLNLINEILDLSRIEAG 332

CP000283_1939: domain 1 of 1, from 352 to 421: score 80.4, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHELRTPL+aI+g+++++l + l +e r
CP000283_1 352 SKSRFLATMSHELRTPLNAIIGFSDMILH------EDELMLAPERR- 391

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey + i +++++ll+ +n +Ld+s++e+g
CP000283_1 392 ----------KEYAQLINDSGQHLLSVVNGILDMSKMESG 421

CP000283_0885: domain 1 of 1, from 214 to 281: score 77.2, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++++L+ +++++ +++
CP000283_0 214 MRVDFVANASHELRTPLAALSGFIDTLQG---------PARDDAKAR 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ +a r+ rLi+dlL lsr e
CP000283_0 252 ----------ERFLGIMQAQATRMARLIDDLLSLSRVELS 281

CP000283_3846: domain 1 of 1, from 672 to 738: score 76.3, E = 3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELR PL+aI+gya+lL+ d+ l++
CP000283_3 672 AKSRYVVGLSHELRSPLNAISGYAQLLEQ--------DSSLPPRP-- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ ++r+a++l+ Li+ lLd+s+ieag
CP000283_3 709 ----------RDQIRLMRRSADHLSGLIDGLLDISKIEAG 738

CP000283_1444: domain 1 of 1, from 972 to 1041: score 75.7, E = 4.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak + la lsHE+RTPL+aI+g+ae++ e + ++l+ +
CP000283_1 972 AKADVLARLSHEIRTPLNAIIGFAEVMIE------ERFGALGNDR-- 1010

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i+ ++er +++dlLdls+ie+g
CP000283_1 1011 ---------YGEYMKDIRASGERVIGIVSDLLDLSQIETG 1041

CP000283_0663: domain 1 of 1, from 674 to 742: score 74.7, E = 8.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l ++sH+L+TPL++++g+a +L+ +t+lse +r
CP000283_0 674 LRSALLTSISHDLKTPLASVLGAAGTLRG-------FWTKLSEAER- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ti +e+erl+r i +lLd++r+e+g
CP000283_0 713 ----------TELLSTIVDESERLNRFIANLLDMTRLESG 742

CP000283_1663: domain 1 of 2, from 359 to 425: score 73.6, E = 1.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt ++ +e + ++l+++q
CP000283_1 359 AKTAFFSNVSHEFRTPLTLMLSPLEEVMT--------QAALPDDQ-- 395

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +++r + rll+L+n lLd++rieag
CP000283_1 396 ----------QALLGIAHRNGLRLLKLVNTLLDFARIEAG 425

CP000283_0366: domain 1 of 1, from 329 to 394: score 71.9, E = 5.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHEL++PLt++r ++e+L +++++ r
CP000283_0 329 AIERFAADVSHELKNPLTSLRSAVETLPL----------AKNDKSR- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i+++++rl+rLi+d+ d sr++a+
CP000283_0 365 ----------ARLLAVIEHDVKRLDRLISDISDASRLDAE 394

CP000283_0207: domain 1 of 1, from 605 to 673: score 71.5, E = 7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +f+ ++s ELR PLt+I+g+a+lL + ++ ++l+++q
CP000283_0 605 IKVDFVHHVSYELRSPLTTIIGFAHLLGD------PSTGPLNDKQ-- 643

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+ i ++++ l ++in++Ldl+ i+ag
CP000283_0 644 ----------SEYIAYITSSTNALMAIINNILDLASIDAG 673

CP000283_1663: domain 2 of 2, from 1058 to 1124: score 63.0, E = 1.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+Ir a+lL++ el+++ +
CP000283_1 1058 AIGQLTGGVAHDFNNLLTVIRSSADLLRR---------RELPPDRM- 1094

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i + a+r +L +lL+++r a+
CP000283_1 1095 ----------RRYVDAISDTADRAAKLTGQLLTFARRHAQ 1124

CP000283_2503: domain 1 of 1, from 453 to 518: score 61.6, E = 4.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTP+++++g+++lL+ +l +
CP000283_2 453 AKSDFLAVMSHEIRTPMNGMLGAIHLLKS---------MPLQGKV-- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++++r + +l+ i +Ld+++i
CP000283_2 489 ----------RTAVNVAERTGAAMLATIGGILDFAKISDS 518

CP000283_0835: domain 1 of 1, from 801 to 866: score 61.4, E = 4.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH++ +PL+a r+ya L e + e+
CP000283_0 801 SKTRFLAAASHDILQPLNAARLYATSLVE---------RQNGGED-- 836

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e i++++e ++++i lLd+sr++ag
CP000283_0 837 ----------SRLVENIDESLEAIEEIIGALLDISRLDAG 866

CP000283_4219: domain 1 of 1, from 230 to 295: score 58.0, E = 4.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e +a ++HELR PLt++++ a+++l+ t+ ++
CP000283_4 230 HEREITAFAAHELRSPLTGLKTQAQVALA---------TTDPAVA-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ il +++r rL+++lL+l+r++a
CP000283_4 266 ----------RAALQQILVAVDRATRLVRQLLTLARLDAR 295

CP000283_2578: domain 1 of 1, from 139 to 194: score 51.0, E = 4.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+l+HE+++PL++Irg+a+lL+ +s+e+
CP000283_2 139 SVIALAAMLAHEIKNPLSGIRGAAQLLEQ----------QASSED-- 173

peLRledpeyreyletilreaerllrLindl<-*
r +++ i +ea+r+ L++++
CP000283_2 174 ----------RMLTRLICDEADRIVTLVDRM 194

CP000283_0924: domain 1 of 1, from 32 to 97: score 46.0, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + la+ +HE RTPLt+I++ ++lL + ++l+e +
CP000283_0 32 MVETALAAFAHEVRTPLTGILAVSDLLAT---------SDLGERE-- 67

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ti+ ae+l+ L + d +r+++
CP000283_0 68 ----------RRWVDTIKAGAEHLSGLATLFVDAARLGSA 97

CP000283_2008: domain 1 of 1, from 237 to 303: score 44.6, E = 3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e n++H+L+TPLt +r ae +l+ + +e +
CP000283_2 237 GLKEVSDNIAHDLKTPLTRLRNRAEEALA---------QSGGEAD-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le+ ++e++ l r n lL ++r+e+g
CP000283_2 273 ---------YRAALERTIEESDGLIRTFNALLMIARAESG 303

CP000283_2580: domain 1 of 1, from 507 to 578: score 44.3, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ g ++ +
CP000283_2 507 AWGDVARRIAHEIKNPLTPIQLSAERIKRKF-----GKVIIEDKGI- 547

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ti r+++ ++r+++++ ++r+ +
CP000283_2 548 ---------FEQCTDTIVRQVDDIRRMVDEFSRFARMPKP 578

CP000283_1867: domain 1 of 1, from 540 to 606: score 42.3, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g+ae+L e el++ +l
CP000283_1 540 AIGQLTGGVAHDFNNMLTVISGTAEILIE----------ELTDRPNL 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+++aer +L ++lL ++r +
CP000283_1 577 ----------SNIAKMIEQAAERGADLTRQLLAFARKQPL 606

CP000283_3864: domain 1 of 1, from 259 to 317: score 41.7, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRT Lt ++ +el+ + +++
CP000283_3 259 QRTAMLAGVSHDLRTILTRFKLELELIGD-------------APE-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++++++ ++++++ L ++r ++g
CP000283_3 291 -------------TEGMRKDVDEMSAMLEAYLAFARGDSG 317

CP000283_1341: domain 1 of 1, from 280 to 351: score 38.8, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PL+aI+ y + ++ +lag+++ + ++
CP000283_1 280 AMGEMASALAHELNQPLSAISNYMKGSRR----LLAGSSDPNISKI- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e++ ++a r ++i++l+d+ ++
CP000283_1 322 ----------ENAMERAAEQALRAGQIIRRLRDFVARGES 351

CP000283_0119: domain 1 of 1, from 534 to 600: score 37.2, E = 3.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H+L++ Lt++ g +e+L + + + + +
CP000283_0 534 AIGQLTGGVAHDLNNILTVLTGGIEILAD---------GVSDRPAL- 570

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++ r ++L n lL ++r +
CP000283_0 571 ----------KDVAVMVDQAVSRASDLTNGLLSFARKQPL 600

CP000283_4352: domain 1 of 1, from 320 to 389: score 36.9, E = 4.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e l +++H+L++PL +I+g +e+L e +++++ s e +
CP000283_4 320 FKNEILGTVAHDLKNPLGVILGRTEMLTE------LISAASSKENV- 359

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+++++rl ++++ l + ++a
CP000283_4 360 ----------IAQVDHIREATRRLTSMVDHLISDAMADAF 389

CP000283_3261: domain 1 of 1, from 438 to 504: score 36.5, E = 5.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++H++++ Lt+I g+ae L + + + +++
CP000283_3 438 TVGQLSGGIAHDFNNLLTVIVGNAEFLGD---------QLKARQDL- 474

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + + i r+++r +L ++lL +sr ++
CP000283_3 475 ----------RSLARDISRAGQRGAELTQRLLAFSRRQTL 504

CP000283_3073: domain 1 of 1, from 475 to 543: score 35.8, E = 9.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el+ + +++ + +
CP000283_3 475 AVGQLTGGLAHDFNNLLAGISGSLELMTT------RISQGRLKDV-- 513

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl ++ +++r +L +lL ++r ++
CP000283_3 514 ----------DKYLVAAQGAVKRAASLTHRLLAFARRQTL 543

CP000283_0130: domain 1 of 1, from 210 to 274: score 34.4, E = 2.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HEL TPL++I + + L++ +++e
CP000283_0 210 QIDGMAAAAAHELGTPLSTIFLISRELEK----------SAPPEM-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+t++++a+r+++++ + l ++a+
CP000283_0 245 ----------VGDLRTLREQAQRCREILAKISHLNAAGAP 274

CP000283_3321: domain 1 of 1, from 180 to 245: score 33.7, E = 3.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++ H++++ Lt++ g++ +Ll+ + l+ +q
CP000283_3 180 LLGQFVIGIIHDFNNVLTVLNGASAMLLR---------GGLTQQQ-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i +++ +L ++lL++sr++
CP000283_3 216 ----------ARILRDINQAISGAAQLSRRLLEFSRLDGT 245

CP000283_1696: domain 1 of 1, from 466 to 532: score 32.9, E = 6.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L+aI+++ + Ll+ ++ +++
CP000283_1 466 TIGQLAGGIAHDFNNVLSAIMMANDFLLN--------AHKPTDPS-- 502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a r L+++lL +sr ++
CP000283_1 503 ----------FQDIMQIKQNATRAATLVRQLLAFSRKQTL 532

CP000283_2393: domain 1 of 1, from 538 to 606: score 31.9, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++H+L+ PL I ++a lL + + +++rl
CP000283_2 538 ELESFAYVAAHDLKEPLRHIEAFAGLLSD--------LLAPEAKTRL 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+ +++rl++Lindl ++sr + +
CP000283_2 577 ----------NVMVNGIEASSRRLRALINDLAEYSRVGRQ 606

CP000283_2392: domain 1 of 1, from 519 to 587: score 30.6, E = 2.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +sH+++ PL I ++a lL e e+++e +
CP000283_2 519 ELEAFANVASHDIKEPLRHIEAFAGLLGESI-------REMGDERL- 557

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+++++rl+ Lindl ++s+++
CP000283_2 558 ----------GLMVSGIEKSSQRLRILINDLAEFSQLGRR 587

CP000283_0284: domain 1 of 1, from 704 to 770: score 30.2, E = 3.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ Lt+I g+++++ + + ++ +++
CP000283_0 704 SIGQLTGGIAHDFNNMLTVITGTIDIISD---------GVADQPHL- 740

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i ++a+r +L + lL ++r +
CP000283_0 741 ----------ATIAKLISEAADRGAELTRLLLAFARKQPL 770

CP000283_1178: domain 1 of 1, from 207 to 302: score 28.9, E = 8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldk....v.lagdtels
++++++a+++HEL++P++ I g++++L+++ ++ +++ + ++ +
CP000283_1 207 SLGRLVAGVAHELNNPISFIYGNIHTLQRYRERmaayLqAIHCGADP 253

eeqrlpeLR.l.....edpeyreyletilreaerllrLindlLdlsriea
+e +LR++ + + y+ ++e l+ a r ++ + +l+ ls +
CP000283_1 254 AEV--EALRrElkidaLLADYASLIEGTLEGAMRVSEVVKNLRRLSFPKS 301

g<-*
g
CP000283_1 302 G 302

CP000283_2339: domain 1 of 1, from 237 to 308: score 27.6, E = 1.9e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ ++l+HEL++PL aI y+ ++ +d ++ ++++r
CP000283_2 237 TMGEMSSALAHELNQPLGAITNYVRGSRRLVD-----ASNHPDKTR- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++ +++ r + i++l+++ ++
CP000283_2 278 ---------IGAALDKAAQQTLRAGEVIQRLREFVGRGET 308

CP000283_2191: domain 1 of 1, from 339 to 404: score 26.9, E = 2.9e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++H++++ L ++ g ++ L++ + + ++
CP000283_2 339 SLGRLTGGVAHDFNNLLMVVGGSVQKLRR---------RHNDLQD-- 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ i++++ L ++lL +sr +
CP000283_2 375 ----------RRTFDMIDSAVAKGAGLTRQLLSFSRRHNV 404


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 12 0|=
-13 64 3|*====
-12 177 100|======*=====
-11 434 521|============================= *
-10 725 966|================================================= *
-9 883 998|==========================================================*
-8 727 747|=================================================*
-7 539 471|===============================*====
-6 356 271|==================*=====
-5 201 148|=========*====
-4 96 79|=====*=
-3 76 42|==*===
-2 23 22|=*
-1 23 11|*=
0 4 6|*
1 3 3|*
2 5 1|*
3 3 0|=
4 1 0|=
> 5 45 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 244.2137
P(chi-square) = 0

Total sequences searched: 4397

Whole sequence top hits:
tophits_s report:
Total hits: 37
Satisfying E cutoff: 37
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 37
Satisfying E cutoff: 37
Total memory: 35K


Acknowledgements:

This research is funded by:

Developed by: