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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Rhodopseudomonas palustris BisB5  

Data for CP000283  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000283.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000283_3769 CDS_4227536-4229854 59.2 3.9e-17 1
CP000283_2395 CDS_2679758-2680888 54.7 8.7e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000283_3769 1/1 575 641 .. 1 70 [] 59.2 3.9e-17
CP000283_2395 1/1 176 242 .. 1 70 [] 54.7 8.7e-16

Alignments of top-scoring domains:
CP000283_3769: domain 1 of 1, from 575 to 641: score 59.2, E = 3.9e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIARELHD++gQsL+++ l+ e + +++ d++e++++++ i
CP000283_3 575 ERLRIARELHDTLGQSLTLLQLGFENLGQVA---PDNGELQRRIAGI 618

relarealaevRrllgdLRpaal<-*
++l e ++v rl++++Rp+al
CP000283_3 619 KTLTAEIGQQVNRLAWEIRPTAL 641

CP000283_2395: domain 1 of 1, from 176 to 242: score 54.7, E = 8.7e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARE+HD +gQs +++ l+l+ ++r + ++ +++ ++ +
CP000283_2 176 ERQRIAREMHDNLGQSVTLVQLGLDSIARNA--PAQS-DIADKATSL 219

relarealaevRrllgdLRpaal<-*
+++ ++ + + r++++ Rp+al
CP000283_2 220 KRITHDMSKSLHRIAWEVRPTAL 242


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 8 0|=
-13 51 0|====
-12 126 49|===*======
-11 195 402|=============== *
-10 518 935|======================================== *
-9 767 1061|==========================================================*
-8 640 818|================================================== *
-7 612 514|=======================================*========
-6 480 291|======================*==============
-5 410 156|===========*====================
-4 208 81|======*=========
-3 143 41|===*=======
-2 87 21|=*=====
-1 62 10|*====
0 30 5|*==
1 25 2|*=
2 10 1|*
3 9 0|=
4 6 0|=
5 1 0|=
6 3 0|=
7 0 0|
> 8 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2075.4531
P(chi-square) = 0

Total sequences searched: 4397

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: