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Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Methylobacillus flagellatus KT  

Data for CP000284  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000284.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000284_1280 CDS_1359773-1361671 96.5 3.6e-27 1
CP000284_2648 CDS_2864825-2866966 88.8 5.3e-25 1
CP000284_1759 CDS_1900979-1897539 83.0 2.4e-23 1
CP000284_0487 CDS_508331-507003 81.6 6e-23 1
CP000284_2581 CDS_2787286-2790762 81.3 7.1e-23 1
CP000284_0215 CDS_229207-227612 72.8 1.8e-20 1
CP000284_0910 CDS_961129-959639 70.6 8e-20 1
CP000284_1054 CDS_1104161-1102671 70.6 8e-20 1
CP000284_1305 CDS_1389410-1390768 64.3 4.8e-18 1
CP000284_0666 CDS_698654-696543 63.7 7e-18 1
CP000284_0712 CDS_744830-743493 57.9 3.1e-16 1
CP000284_2389 CDS_2557536-2559596 56.7 6.7e-16 1
CP000284_2443 CDS_2627148-2628245 54.1 3.8e-15 1
CP000284_0652 CDS_683583-682255 46.3 5.8e-13 1
CP000284_0182 CDS_195519-193393 43.1 4.8e-12 1
CP000284_2584 CDS_2792226-2793443 42.3 8.2e-12 1
CP000284_2531 CDS_2723525-2725333 36.2 4.2e-10 1
CP000284_2303 CDS_2460528-2461997 33.8 2e-09 1
CP000284_2730 CDS_2950042-2948765 32.6 4.6e-09 1
CP000284_0429 CDS_439165-436892 31.9 7.2e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000284_1280 1/1 406 472 .. 1 87 [] 96.5 3.6e-27
CP000284_2648 1/1 197 262 .. 1 87 [] 88.8 5.3e-25
CP000284_1759 1/1 692 758 .. 1 87 [] 83.0 2.4e-23
CP000284_0487 1/1 205 272 .. 1 87 [] 81.6 6e-23
CP000284_2581 1/1 488 556 .. 1 87 [] 81.3 7.1e-23
CP000284_0215 1/1 315 381 .. 1 87 [] 72.8 1.8e-20
CP000284_0910 1/1 270 338 .. 1 87 [] 70.6 8e-20
CP000284_1054 1/1 270 338 .. 1 87 [] 70.6 8e-20
CP000284_1305 1/1 234 298 .. 1 87 [] 64.3 4.8e-18
CP000284_0666 1/1 336 404 .. 1 87 [] 63.7 7e-18
CP000284_0712 1/1 222 285 .. 1 87 [] 57.9 3.1e-16
CP000284_2389 1/1 459 530 .. 1 87 [] 56.7 6.7e-16
CP000284_2443 1/1 131 188 .. 1 79 [. 54.1 3.8e-15
CP000284_0652 1/1 215 276 .. 1 87 [] 46.3 5.8e-13
CP000284_0182 1/1 487 559 .. 1 87 [] 43.1 4.8e-12
CP000284_2584 1/1 171 244 .. 1 87 [] 42.3 8.2e-12
CP000284_2531 1/1 393 446 .. 1 74 [. 36.2 4.2e-10
CP000284_2303 1/1 272 323 .. 1 73 [. 33.8 2e-09
CP000284_2730 1/1 256 314 .. 1 87 [] 32.6 4.6e-09
CP000284_0429 1/1 537 601 .. 1 87 [] 31.9 7.2e-09

Alignments of top-scoring domains:
CP000284_1280: domain 1 of 1, from 406 to 472: score 96.5, E = 3.6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efl++++HELRTP+++I g++elLl+ e ++eq+
CP000284_1 406 MKGEFLSMAAHELRTPMSSIHGFTELLLK---------REFTPEQQ- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l t++r++ rl +Lind+Ldl++iea
CP000284_1 443 ----------KDMLATVHRQSVRLTKLINDMLDLAKIEAR 472

CP000284_2648: domain 1 of 1, from 197 to 262: score 88.8, E = 5.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+an+sHE+RTPL++I+g + lL++ t l++eq
CP000284_2 197 AKTRFVANMSHEIRTPLNGIIGISTLLRN---------TQLNPEQ-- 232

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+t++++++ ll+++n++Ld+s+ie++
CP000284_2 233 ----------DELLRTLESSSKLLLAQLNNVLDFSKIEQE 262

CP000284_1759: domain 1 of 1, from 692 to 758: score 83.0, E = 2.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL++I+gya+lL + d+ +e
CP000284_1 692 AKSRYITGISHELRTPLNSILGYAQLLDN--------DPSIPENR-- 728

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i+r++e+ll+Li+ Ld++rie+g
CP000284_1 729 ----------RQSIRVIRRSGEHLLSLIEGTLDIARIESG 758

CP000284_0487: domain 1 of 1, from 205 to 272: score 81.6, E = 6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt++ g++e+L + +++ +e +
CP000284_0 205 MRRDFIANVSHELRTPLTVVGGFLETLMD-------MEGAVPEST-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+ +++++ r++rLi+dlL+ls++e+
CP000284_0 243 ----------RAYFGMMQEQTGRMRRLIEDLLTLSQLENS 272

CP000284_2581: domain 1 of 1, from 488 to 556: score 81.3, E = 7.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL + ++++lseeq
CP000284_2 488 YKSEFLANMSHELRTPLNSSLILAKLLAD------NREGNLSEEQ-- 526

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +ti+++++ ll+Lind+Ld+s+ eag
CP000284_2 527 ----------VKFAQTIYSAGNDLLNLINDILDISKVEAG 556

CP000284_0215: domain 1 of 1, from 315 to 381: score 72.8, E = 1.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++an++HE+R+PL+aI+ +++lL+e d+ ++
CP000284_0 315 ALGRLTANIAHEIRNPLSAISHATQLLQE--------DESHDPAS-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i + ++r++++i d+L+l r +
CP000284_0 352 ----------QRMLQIISDNVQRMEQMIKDVLELNRRDRT 381

CP000284_0910: domain 1 of 1, from 270 to 338: score 70.6, E = 8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl+n+sHEL+TPLtaIr +elL +e+ ++l+++q
CP000284_0 270 QKQRFLRNVSHELKTPLTAIREGSELLSDEVG------GPLTPQQ-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++++++ rl+++i++lL ++ ++
CP000284_0 309 ----------REIAGILRESSLRLQKMIENLLSFTAAQFH 338

CP000284_1054: domain 1 of 1, from 270 to 338: score 70.6, E = 8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl+n+sHEL+TPLtaIr +elL +e+ ++l+++q
CP000284_1 270 QKQRFLRNVSHELKTPLTAIREGSELLSDEVG------GPLTPQQ-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++++++ rl+++i++lL ++ ++
CP000284_1 309 ----------REIAGILRESSLRLQKMIENLLSFTAAQFH 338

CP000284_1305: domain 1 of 1, from 234 to 298: score 64.3, E = 4.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++flan++H+LRTPL+++++ +el+ e +s+e+r
CP000284_1 234 LQNQFLANAAHQLRTPLAGLQMQLELASE-----------QSPEER- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++l +++r+ rL n+lL l+r+e +
CP000284_1 269 ----------MQSHERMLVSTRRIVRLANQLLALARAEGE 298

CP000284_0666: domain 1 of 1, from 336 to 404: score 63.7, E = 7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla +sHELR+PL+ I+++aelL + +e q++
CP000284_0 336 AKDDFLAVVSHELRNPLNLILLNAELLAR-----------IPEAQTQ 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p ++ et+ r ++ l ++dlLdlsri +g
CP000284_0 372 PII-------QRTAETLSRTVKNLAIVVDDLLDLSRINTG 404

CP000284_0712: domain 1 of 1, from 222 to 285: score 57.9, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +l ++sHELR P++ +r+++ l++ ++++
CP000284_0 222 AQRLLLHDVSHELRSPVARMRLAVGLAQQ-----------QPDKL-- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i+re+erl++L+ ++L+lsr+e+g
CP000284_0 256 ----------ASALSRIERETERLDELLGQMLTLSRLESG 285

CP000284_2389: domain 1 of 1, from 459 to 530: score 56.7, E = 6.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ef+a++sHE+RTPL+ I ++++ L l++ ++l+ +l
CP000284_2 459 AQQEFFAMASHEFRTPLAIIDTTSQRLSL-----LQSQPNLDITAML 500

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i+r+++r++r+i+++L + r+e
CP000284_2 501 ----------TPALRKIRRATQRMSRIIDNFLSMDRLEGI 530

CP000284_2443: domain 1 of 1, from 131 to 188: score 54.1, E = 3.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+l+nl+HE+R+PL ++rg+a+lL+ el+ +
CP000284_2 131 ANAELLRNLAHEIRNPLGGLRGAAQLLEH----------ELPQVSL- 166

peLRledpeyreyletilreaerllrLindlL<-*
rey+++i++ea+rl+ L ++lL
CP000284_2 167 ----------REYTQVIIKEADRLQLLMDRLL 188

CP000284_0652: domain 1 of 1, from 215 to 276: score 46.3, E = 5.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPL+ +r+ +e+L +e+
CP000284_0 215 ERTLLLAGISHDLRTPLARLRLSVEMLPDEYC--------------- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++ ++++i ++Ld+ r +g
CP000284_0 247 ----------ASLKAGMIQDIGDMDSIIHQFLDFVRGIEG 276

CP000284_0182: domain 1 of 1, from 487 to 559: score 43.1, E = 4.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e ++ l+HE+++PLt I++ ae ++ +l +a+ +++++e +
CP000284_0 487 AWAEVARRLAHEIKNPLTPIQLSAERIEHKL---AAKLSKADAEML- 529

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ti ++++ + +++n++ +++r+ a
CP000284_0 530 ----------SRATTTIVSQVNAMKAMVNEFSEYARLPAL 559

CP000284_2584: domain 1 of 1, from 171 to 244: score 42.3, E = 8.2e-12
*->akseflanlsHELRTPLtaIrg.....yaelLleeldkvlagdtels
++ f+++++HELRTPL+++ ++ + ++++l + +l ++ s
CP000284_2 171 IRDNFISMVAHELRTPLNTLFLdvqvrTLQLERGNL-------AAFS 210

eeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++e+ +r+++ + rLi+d+Ldl+ri +g
CP000284_2 211 QQEL-----------QKMTERDRRQIKNMIRLIDDMLDLTRISSG 244

CP000284_2531: domain 1 of 1, from 393 to 446: score 36.2, E = 4.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++ HEL+TPL++Ir++++++++ t +++
CP000284_2 393 ELGHFMAMITHELKTPLAVIRLALDAMQM---------TGPLKKHV- 429

peLRledpeyreyletilreaerllrL<-*
+ ++ i + ++r+ ++
CP000284_2 430 ----------EHSINDISDMIDRCAQI 446

CP000284_2303: domain 1 of 1, from 272 to 323: score 33.8, E = 2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +l+H +R+PL++Ir++a+++ ++l+ e+
CP000284_2 272 ALGLLVPMLAHNIRNPLASIRATAQVADS---------ANLDQET-- 307

peLRledpeyreyletilreaerllr<-*
r+ l i++ ++rl+r
CP000284_2 308 ----------RDSLTAIINTVDRLDR 323

CP000284_2730: domain 1 of 1, from 256 to 314: score 32.6, E = 4.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+LR P+t +r+ ae + +
CP000284_2 256 EKTRFLAAISHDLRSPITRMRLRAEQIDK------------------ 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+ +r++e +++Li+ d+ r +
CP000284_2 285 ----------PALREKFRRDLEDMESLISSTVDYMRGVEV 314

CP000284_0429: domain 1 of 1, from 537 to 601: score 31.9, E = 7.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e ++ + H++R PL++I+ ++el ++ls+e++
CP000284_0 537 DRDEAFRFITHDIRAPLSSIISLVEL------------QKLSPEKNG 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i++ a+ l L +d+ +l+r+ +g
CP000284_0 572 ----------ERWLAMIEKHADNALTLADDFVQLTRAKSG 601


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 3 0|=
-13 19 2|*=
-12 126 62|======*======
-11 240 326|======================== *
-10 428 605|=========================================== *
-9 560 625|======================================================== *
-8 457 468|==============================================*
-7 359 295|=============================*======
-6 226 169|================*======
-5 127 93|=========*===
-4 78 49|====*===
-3 45 26|==*==
-2 25 13|=*=
-1 16 7|*=
0 11 3|*=
1 3 1|*
2 3 1|*
3 1 0|=
4 1 0|=
5 2 0|=
6 0 0|
> 7 23 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 238.8446
P(chi-square) = 1.061e-314

Total sequences searched: 2753

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: