Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Chromohalobacter salexigens DSM 3043  

Data for CP000285  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000285.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000285_2649 CDS_2988534-2986321 101.5 1.7e-28 1
CP000285_1623 CDS_1859893-1857101 99.3 7.1e-28 1
CP000285_1054 CDS_1200562-1202649 80.2 1.8e-22 1
CP000285_3233 CDS_3627481-3628800 79.0 3.9e-22 1
CP000285_0711 CDS_802613-804169 66.4 1.4e-18 1
CP000285_0961 CDS_1087830-1086364 64.6 4.7e-18 1
CP000285_0666 CDS_751245-752897 63.4 1e-17 1
CP000285_2072 CDS_2354130-2356229 60.0 9.1e-17 1
CP000285_0244 CDS_278829-279926 58.7 2.2e-16 1
CP000285_0102 CDS_127408-128805 56.1 1.2e-15 1
CP000285_0861 CDS_977545-973595 54.1 4.5e-15 1
CP000285_2577 CDS_2908635-2907310 53.2 8e-15 1
CP000285_1769 CDS_2027958-2026558 53.0 9.1e-15 1
CP000285_0724 CDS_815952-817355 52.8 1.1e-14 1
CP000285_1438 CDS_1643713-1642331 48.0 2.3e-13 1
CP000285_2388 CDS_2699364-2701322 36.7 3.8e-10 1
CP000285_2399 CDS_2714812-2713370 31.9 8.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000285_2649 1/1 236 301 .. 1 87 [] 101.5 1.7e-28
CP000285_1623 1/1 272 337 .. 1 87 [] 99.3 7.1e-28
CP000285_1054 1/1 184 249 .. 1 87 [] 80.2 1.8e-22
CP000285_3233 1/1 202 269 .. 1 87 [] 79.0 3.9e-22
CP000285_0711 1/1 264 332 .. 1 87 [] 66.4 1.4e-18
CP000285_0961 1/1 256 320 .. 1 87 [] 64.6 4.7e-18
CP000285_0666 1/1 309 374 .. 1 87 [] 63.4 1e-17
CP000285_2072 1/1 445 512 .. 1 87 [] 60.0 9.1e-17
CP000285_0244 1/1 141 198 .. 1 79 [. 58.7 2.2e-16
CP000285_0102 1/1 234 300 .. 1 87 [] 56.1 1.2e-15
CP000285_0861 1/1 943 1008 .. 1 87 [] 54.1 4.5e-15
CP000285_2577 1/1 223 287 .. 1 87 [] 53.2 8e-15
CP000285_1769 1/1 253 313 .. 1 87 [] 53.0 9.1e-15
CP000285_0724 1/1 241 306 .. 1 87 [] 52.8 1.1e-14
CP000285_1438 1/1 239 304 .. 1 87 [] 48.0 2.3e-13
CP000285_2388 1/1 418 486 .. 1 87 [] 36.7 3.8e-10
CP000285_2399 1/1 274 320 .. 1 75 [. 31.9 8.4e-09

Alignments of top-scoring domains:
CP000285_2649: domain 1 of 1, from 236 to 301: score 101.5, E = 1.7e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++++g++elL+e el+
CP000285_2 236 AKSDFLATVSHEIRTPLNGVLGMTELLRE---------RELDGTS-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+eti++++ +ll Li+dlLd+s+ieag
CP000285_2 272 ----------HQYVETIHESGSQLLTLISDLLDFSKIEAG 301

CP000285_1623: domain 1 of 1, from 272 to 337: score 99.3, E = 7.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE+RTPL++I+g+++lL + ++l++ q
CP000285_1 272 IKSQFLANISHEIRTPLNGIIGFCQLLGR---------SALDSRQ-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le ++ +++ ll+Li+d+Ld+s+ieag
CP000285_1 308 ----------REWLEQVQTASDNLLSLISDVLDFSKIEAG 337

CP000285_1054: domain 1 of 1, from 184 to 249: score 80.2, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+a +sHE RTPL+++ g++++L++ +++ e+
CP000285_1 184 SKSEFMAIMSHEVRTPLNGVVGMLDVLED---------EPCQEKR-- 219

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + t+++++ +l++ ind+Ld+s+ieag
CP000285_1 220 ----------EQHFATLRESTASLRAVINDVLDYSKIEAG 249

CP000285_3233: domain 1 of 1, from 202 to 269: score 79.0, E = 3.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt++ gy+e+ l+ + + r
CP000285_3 202 MRRDFVANVSHELRTPLTVLTGYLETYLD---------NADQLPPR- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ l ++++++r++rL++dlL ls++e+
CP000285_3 239 ---------WQRGLGQMQEQSQRMQRLVEDLLLLSKLETD 269

CP000285_0711: domain 1 of 1, from 264 to 332: score 66.4, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl+++sHEL+TPL+++r + lL +++ +else q
CP000285_0 264 QKQQFLRHMSHELKTPLASVREGTALLSDGV------VGELSERQ-- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ i+ +++ l++Li++lLd+ +++
CP000285_0 303 ----------REIVGLIDVSGQELQELIEQLLDYNLLQHS 332

CP000285_0961: domain 1 of 1, from 256 to 320: score 64.6, E = 4.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+++HELRTPL+++rg +e++++ + ++ +
CP000285_0 256 HRQQWVADIAHELRTPLAVLRGEIEAIED---------GIRPLGD-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++ +e+ +l+rL++dl+ l++ +ag
CP000285_0 292 -----------DTLASLAQEVAQLERLVDDLRLLAQSDAG 320

CP000285_0666: domain 1 of 1, from 309 to 374: score 63.4, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+++++sHELRTP++ Ir+++++ ++ + +
CP000285_0 309 TQQEMIRAVSHELRTPVARIRFAVQMVED---------MTDEPVV-- 344

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i+ ++e l++L++++L+++r+++
CP000285_0 345 ----------RRQLQDIDGDIEELDQLVDEILTYARLGSD 374

CP000285_2072: domain 1 of 1, from 445 to 512: score 60.0, E = 9.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g++el+ + +l+++ ++
CP000285_2 445 ALGELTAGIAHEINNPAAVILGHVELIAD----------TLGPDVAP 481

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ ++ti+ ++er+++Li++lL++sr++ g
CP000285_2 482 ---------VRDEVDTIIAQVERIRALIDNLLQYSRAGGG 512

CP000285_0244: domain 1 of 1, from 141 to 198: score 58.7, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+HE ++PL +Irg+a+lL++ +l+++q+
CP000285_0 141 TIKVLTRGLAHEVKNPLGGIRGAAQLLER----------DLPDPQL- 176

peLRledpeyreyletilreaerllrLindlL<-*
+e++++i +ea+rl++L++++L
CP000285_0 177 ----------AEFTRVIVEEADRLRDLVDRML 198

CP000285_0102: domain 1 of 1, from 234 to 300: score 56.1, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +l+HE+RTPL ++g+++ +l e+++e+
CP000285_0 234 QLSRFSEDLAHEMRTPLGNLLGATQQALQ---------RERTAEE-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++l + +e erl+r+i+ +L l+r e++
CP000285_0 270 ---------YRQLLGSHVEEYERLSRMIETMLFLARTEQP 300

CP000285_0861: domain 1 of 1, from 943 to 1008: score 54.1, E = 4.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++++L +++++
CP000285_0 943 SKTRFLAAASHDLLQPLNAARLFTSALGQ----------QVDADDL- 978

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i+++++ ++L++ lLd+s+++ag
CP000285_0 979 ----------RHTISHIDNSLQAAEELLSTLLDISKLDAG 1008

CP000285_2577: domain 1 of 1, from 223 to 287: score 53.2, E = 8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ +++HELRTPLta++++++++++ +e +
CP000285_2 223 REQRFTDAAAHELRTPLTAVKTHLQVARR----------VEGEAT-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++ a+rl + +++lL+l+rie+g
CP000285_2 258 ----------HQAVMHAEQGAQRLAATLEQLLTLARIEEG 287

CP000285_1769: domain 1 of 1, from 253 to 313: score 53.0, E = 9.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTPL+a+r +++ +++ +e
CP000285_1 253 RERRFTADAAHELRTPLAALRIHLDNAKA---------GE------- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ +erl+r +++lL l+r++
CP000285_1 284 ----------TASLQKAYTGIERLQRVVEQLLVLARLDRT 313

CP000285_0724: domain 1 of 1, from 241 to 306: score 52.8, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a++sH+L+TPL+++++++el+l +e+
CP000285_0 241 ALLRFTADASHQLKTPLAGLQATSELALQ----------SEHPET-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r++l ++++a r +rL +lL l+r+++
CP000285_0 276 ---------WRQALADVHDSAGRTSRLAGQLLSLARLRHA 306

CP000285_1438: domain 1 of 1, from 239 to 304: score 48.0, E = 2.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++sH+LRTPL+++++ ael+l+ ++
CP000285_1 239 NQERFIGDASHQLRTPLAGLSARAELALR----------QDDPRA-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +l++++ +a+ rL ++lL l+r+ ++
CP000285_1 274 ---------WHAALDVMRGSADKTARLASQLLSLTRLNNP 304

CP000285_2388: domain 1 of 1, from 418 to 486: score 36.7, E = 3.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+++++a++ HEL++PL+aIr+y+e +++ + +++e+ +
CP000285_2 418 VLGQLAAGINHELNQPLAAIRAYTENARA----FiARQRHEAADAN- 459

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +l+ +er+ ++ +l+++sr
CP000285_2 460 --------------LAQVLELTERMAEISAQLRQFSRKSGD 486

CP000285_2399: domain 1 of 1, from 274 to 320: score 31.9, E = 8.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++sH+L+TP+t +r+ ae+L + + q
CP000285_2 274 ERERLFSAISHDLKTPITRLRLRAEMLDA-------------PAQ-- 305

peLRledpeyreyletilreaerllrLi<-*
e +r+++ +++L+
CP000285_2 306 -------------REAFIRSLDEMDQLV 320


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 6 0|=
-13 24 2|*==
-12 76 75|======*
-11 242 390|====================== *
-10 511 725|=============================================== *
-9 621 748|========================================================= *
-8 635 560|==================================================*=======
-7 431 353|================================*=======
-6 298 203|==================*=========
-5 183 111|==========*======
-4 108 59|=====*====
-3 52 31|==*==
-2 44 16|=*==
-1 16 8|*=
0 15 4|*=
1 2 2|*
2 5 1|*
3 4 0|=
4 2 0|=
5 3 0|=
6 0 0|
> 7 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 362.6742
P(chi-square) = 0

Total sequences searched: 3298

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: