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1 accessions found for Methanococcoides burtonii DSM 6242  

Data for CP000300  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000300.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000300_1065 CDS_1254051-1255574 91.4 8.1e-26 1
CP000300_0079 CDS_73103-75394 90.9 1.1e-25 1
CP000300_0868 CDS_1029321-1028131 90.0 2.1e-25 1
CP000300_1969 CDS_2223399-2221351 85.9 2.9e-24 1
CP000300_0935 CDS_1106056-1107951 84.2 9.1e-24 1
CP000300_0635 CDS_717453-715675 83.6 1.3e-23 1
CP000300_1968 CDS_2221091-2219343 83.2 1.7e-23 1
CP000300_0586 CDS_658646-660016 82.9 2.1e-23 1
CP000300_2230 CDS_2529485-2528370 81.1 6.6e-23 1
CP000300_0468 CDS_511432-509531 77.4 7.7e-22 1
CP000300_0368 CDS_381331-382641 74.9 3.8e-21 1
CP000300_0751 CDS_869177-867618 74.1 6.6e-21 1
CP000300_0351 CDS_360103-360810 72.9 1.5e-20 1
CP000300_0703 CDS_805881-807032 68.5 2.5e-19 1
CP000300_1640 CDS_1868958-1867426 65.6 1.7e-18 1
CP000300_1145 CDS_1339281-1337458 65.2 2.2e-18 1
CP000300_0873 CDS_1034571-1036868 63.5 6.6e-18 1
CP000300_2241 CDS_2541078-2539561 60.1 6e-17 1
CP000300_0290 CDS_287366-285696 58.8 1.4e-16 1
CP000300_0934 CDS_1103729-1105900 35.6 5.4e-10 2
CP000300_0245 CDS_237923-239494 33.8 1.7e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000300_1065 1/1 292 360 .. 1 87 [] 91.4 8.1e-26
CP000300_0079 1/1 529 597 .. 1 87 [] 90.9 1.1e-25
CP000300_0868 1/1 171 239 .. 1 87 [] 90.0 2.1e-25
CP000300_1969 1/1 443 511 .. 1 87 [] 85.9 2.9e-24
CP000300_0935 1/1 406 474 .. 1 87 [] 84.2 9.1e-24
CP000300_0635 1/1 357 423 .. 1 87 [] 83.6 1.3e-23
CP000300_1968 1/1 351 419 .. 1 87 [] 83.2 1.7e-23
CP000300_0586 1/1 225 293 .. 1 87 [] 82.9 2.1e-23
CP000300_2230 1/1 134 202 .. 1 87 [] 81.1 6.6e-23
CP000300_0468 1/1 401 469 .. 1 87 [] 77.4 7.7e-22
CP000300_0368 1/1 207 275 .. 1 87 [] 74.9 3.8e-21
CP000300_0751 1/1 295 363 .. 1 87 [] 74.1 6.6e-21
CP000300_0351 1/1 10 77 .. 1 87 [] 72.9 1.5e-20
CP000300_0703 1/1 156 224 .. 1 87 [] 68.5 2.5e-19
CP000300_1640 1/1 276 344 .. 1 87 [] 65.6 1.7e-18
CP000300_1145 1/1 383 451 .. 1 87 [] 65.2 2.2e-18
CP000300_0873 1/1 528 590 .. 1 81 [. 63.5 6.6e-18
CP000300_2241 1/1 281 348 .. 1 87 [] 60.1 6e-17
CP000300_0290 1/1 333 395 .. 1 81 [. 58.8 1.4e-16
CP000300_0934 2/2 500 565 .. 1 87 [] 35.1 7.6e-10
CP000300_0245 1/1 306 371 .. 1 87 [] 33.8 1.7e-09

Alignments of top-scoring domains:
CP000300_1065: domain 1 of 1, from 292 to 360: score 91.4, E = 8.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+an+sHELRTPL+aI+g++e+L e + ++l+++q
CP000300_1 292 TKSEFIANMSHELRTPLNAIIGFSEILIE------KKFGDLNDKQ-- 330

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ i +++ ll++in +L++s+ie+g
CP000300_1 331 ----------DKYLNNIFISGKKLLEIINSILEISKIESG 360

CP000300_0079: domain 1 of 1, from 529 to 597: score 90.9, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+g++elLle+ ++ + +q
CP000300_0 529 TKSEFLANMSHELRTPLNSIIGFSELLLEKTI------GDINNKQ-- 567

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ il +++ll+Lin++Ld+s+ e+g
CP000300_0 568 ----------ERYISNILTGGQHLLSLINEILDISKVESG 597

CP000300_0868: domain 1 of 1, from 171 to 239: score 90.0, E = 2.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHELRTPL++I g++e+Ll+ ++ + l++ q
CP000300_0 171 SKSEFLANVSHELRTPLNSIVGFSEILLD------GRCGGLNDVQ-- 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ + + +++l+++in++L++s+ieag
CP000300_0 210 ----------RRYVQNVSNNGNHLSEIINEILEISKIEAG 239

CP000300_1969: domain 1 of 1, from 443 to 511: score 85.9, E = 2.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fla++sH+LRTPL+aI+gy++lLl+e+ ++l+e+q+
CP000300_1 443 SKNTFLASMSHDLRTPLNAIIGYSDLLLTES------VGDLNEKQI- 482

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ il +++ ll++ind+L +s+ieag
CP000300_1 483 -----------KYTNNILISGRLLLNIINDILNISKIEAG 511

CP000300_0935: domain 1 of 1, from 406 to 474: score 84.2, E = 9.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl+n+sHEL+TPLt+I+gy+el+ +e+ ++lse+q
CP000300_0 406 MKDRFLSNVSHELKTPLTSIKGYTELIYDES------LGTLSEQQ-- 444

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +t+lr a+rl rL++ lL +sr+++g
CP000300_0 445 ----------KEVEKTVLRNANRLKRLVDSLLYISRAQSG 474

CP000300_0635: domain 1 of 1, from 357 to 423: score 83.6, E = 1.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++sHEL+TPLta+++ +e L+e +e+s e +
CP000300_0 357 LKNDFVSMVSHELKTPLTAMKTSSEFLRE---------SECSREIK- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ i+r ++r r+++dlLd+srie+g
CP000300_0 394 ----------EEMLDLIIRNIDRQARMVDDLLDISRIESG 423

CP000300_1968: domain 1 of 1, from 351 to 419: score 83.2, E = 1.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+sef+ n+sHELRTPL++ +g++e++ +e+ ++l+++q
CP000300_1 351 AQSEFIHNISHELRTPLNSTIGFSEMMITEV------LGPLNDKQ-- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++ ++++ll+Lin++L +s+ie+g
CP000300_1 390 ----------KKYLNNVKISGKHLLSLINEILNISKIENG 419

CP000300_0586: domain 1 of 1, from 225 to 293: score 82.9, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL++I+g++++L +e+ ++l+e q
CP000300_0 225 AKSEFLANMSHELRTPLNSIIGFSDVLYNESH------GPLNEYQ-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ +lr +++ll++ind+L +s ie+g
CP000300_0 264 ----------KKYTSNVLRNGKHLLDIINDILSISNIETG 293

CP000300_2230: domain 1 of 1, from 134 to 202: score 81.1, E = 6.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHELRTPL++I+g+++++ +e+ + l+e q
CP000300_2 134 SKSEFLANMSHELRTPLNSIIGFSDVISNESH------GSLNELQ-- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ +++ +++ll++ind+L s+ie+g
CP000300_2 173 ----------KKFISNVISNGKHLLNIINDILSASQIETG 202

CP000300_0468: domain 1 of 1, from 401 to 469: score 77.4, E = 7.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl+n+sHELRTPLt+I+gy++ L +e+ ++ + q
CP000300_0 401 MKDVFLSNVSHELRTPLTSIKGYTQNLYDES------LGDINGSQ-- 439

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ let+lr a+rl+rL++ lL +s+++a+
CP000300_0 440 ----------KTSLETVLRNADRLRRLVDSLLYISQAQAE 469

CP000300_0368: domain 1 of 1, from 207 to 275: score 74.9, E = 3.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f+ n+sHELRTPL++I+g++++L+e+ + +l+e q
CP000300_0 207 IKSNFIGNVSHELRTPLNSIIGFSHILKENNE------NNLTENQ-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y + ++ ++++ll+Lind+Ld+s+ie+g
CP000300_0 246 ----------LKYCSNVEISGKHLLALINDVLDISKIESG 275

CP000300_0751: domain 1 of 1, from 295 to 363: score 74.1, E = 6.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efl+n+sHEL+TPL +I+gy+el + ++ ++l+e+q
CP000300_0 295 MKNEFLSNISHELKTPLVSIKGYVELVFD------GSLGTLNEQQ-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++lr +erl+rLi+ lL +s +e+
CP000300_0 334 ----------KKAVNIVLRNSERLRRLIESLLFISGLESR 363

CP000300_0351: domain 1 of 1, from 10 to 77: score 72.9, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+ n+sHE RTPL++++g++++Ll+ + ++++e q
CP000300_0 10 SKSEFIMNMSHEVRTPLNSVIGFSSVLLD-------KPGNRDESQ-- 47

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ il +++ll++ n++L +s+ie+g
CP000300_0 48 ----------VRYLHNILFNGKHLLEIFNEILAISKIESG 77

CP000300_0703: domain 1 of 1, from 156 to 224: score 68.5, E = 2.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++s ELRTPL++I+g++++L++ + ++l+e+q
CP000300_0 156 VKSDFLASMSYELRTPLNSIIGFSDVLRT------EEIGPLNEKQ-- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ + +++ ll+Lin lL+l +ie+g
CP000300_0 195 ----------LKYLKNVSTSGKELLELINGLLELLKIESG 224

CP000300_1640: domain 1 of 1, from 276 to 344: score 65.6, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+eflan+ HELRTPL +I+g++elL + + ++l+e q
CP000300_1 276 MKDEFLANINHELRTPLISIKGFSELLYN------ERLGNLNERQ-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e++ r +erl++Li+ l s ++++
CP000300_1 315 ----------KRTMESVVRNSERLQHLIESLFYVSEMQNE 344

CP000300_1145: domain 1 of 1, from 383 to 451: score 65.2, E = 2.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+eflanlsHELRTPL++I+g+ l+ e + ++l+e q
CP000300_1 383 MKDEFLANLSHELRTPLNVIKGFGGLMSE------ERFGKLDERQ-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + + r + l +L++ lL ++ +a
CP000300_1 422 ----------RKAMDAVMRNTTILIELVESLLYITSVQAD 451

CP000300_0873: domain 1 of 1, from 528 to 590: score 63.5, E = 6.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan+sHELRTPL+ I+g++++L ++ +el+e+q
CP000300_0 528 TKTEFLANVSHELRTPLNPIIGFSDILVSGVA------GELNEKQ-- 566

peLRledpeyreyletilreaerllrLindlLdl<-*
++y i++ + ll ++n++ d+
CP000300_0 567 ----------KKYALNIKQNGSKLLTIVNRIIDM 590

CP000300_2241: domain 1 of 1, from 281 to 348: score 60.1, E = 6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl nl HELRTPL +I+g++el+le + ++ ++ q
CP000300_2 281 IKDQFLTNLTHELRTPLISIKGFTELMLE------DHMGPINDAQ-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++t+lr +erl++L++ L + e+
CP000300_2 320 ----------KNAIHTVLRNSERLRHLVES-LLYVSGEHT 348

CP000300_0290: domain 1 of 1, from 333 to 395: score 58.8, E = 1.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+anlsHEL+TP+ +I+g++elL + ++ ++l+ eq
CP000300_0 333 LKNEFFANLSHELKTPMISIKGFSELLGD------GKFGPLNVEQ-- 371

peLRledpeyreyletilreaerllrLindlLdl<-*
+++ + + r aerl +Li+ lL +
CP000300_0 372 ----------KKANDAVVRNAERLKDLIDSLLYM 395

CP000300_0934: domain 2 of 2, from 500 to 565: score 35.1, E = 7.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f+ ++H+L +P +++g++e+Ll+ te++e++
CP000300_0 500 LKDMFTDIMRHDLLNPAGVVKGFTEVLLM---------TERDEKT-- 535

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i ++ +l ++i+ +++++e
CP000300_0 536 ----------ERYLKKIWKSNYQLIEMIQSASQFAKLERS 565

CP000300_0245: domain 1 of 1, from 306 to 371: score 33.8, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f+ l+H+L +P +++gy+++Lle +e +ee+
CP000300_0 306 MKDLFTDILRHDLLNPAGVVKGYTDILLE---------SEEDEEK-- 341

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ti+r e l ++i+ ++++++
CP000300_0 342 ----------MKILQTIDRNNEKLIEMIRSAASFAKLDTI 371


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 3 0|=
-13 38 1|*====
-12 145 51|======*============
-11 279 269|=================================*=
-10 457 499|==========================================================*
-9 414 516|==================================================== *
-8 337 386|=========================================== *
-7 241 243|==============================*
-6 156 140|=================*==
-5 62 76|======== *
-4 51 41|=====*=
-3 22 21|==*
-2 18 11|=*=
-1 9 5|*=
0 8 3|*
1 4 1|*
2 1 0|=
3 1 0|=
4 0 0|
5 1 0|=
6 0 0|
7 1 0|=
> 8 25 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 209.6582
P(chi-square) = 1.389e-308

Total sequences searched: 2273

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: