Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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1 accessions found for   

Data for CP000301  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000301.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000301_1338 CDS_1475568-1478255 100.2 5.7e-28 1
CP000301_1851 CDS_2041757-2044528 96.3 7.4e-27 1
CP000301_0311 CDS_336361-334088 93.5 4.6e-26 1
CP000301_4453 CDS_5027220-5024152 91.1 2.2e-25 1
CP000301_1827 CDS_2010329-2008002 88.3 1.3e-24 1
CP000301_0647 CDS_707723-710527 86.1 5.4e-24 1
CP000301_3753 CDS_4222647-4225241 85.2 1e-23 1
CP000301_2039 CDS_2260078-2258477 81.8 9.4e-23 1
CP000301_4867 CDS_5495358-5494027 79.4 4.6e-22 1
CP000301_3889 CDS_4390194-4393760 78.5 8e-22 1
CP000301_1759 CDS_1932254-1934092 76.2 3.6e-21 1
CP000301_0378 CDS_409429-411960 74.2 1.3e-20 1
CP000301_0592 CDS_648784-647084 73.3 2.4e-20 1
CP000301_4490 CDS_5078107-5075384 72.3 4.6e-20 1
CP000301_0819 CDS_912899-911058 71.9 6e-20 1
CP000301_4766 CDS_5384950-5381441 61.0 7.3e-17 1
CP000301_4848 CDS_5475905-5474568 59.5 1.9e-16 1
CP000301_0556 CDS_611725-609260 57.9 5.4e-16 1
CP000301_2548 CDS_2797988-2799160 52.8 1.6e-14 1
CP000301_1994 CDS_2200079-2201545 49.9 1e-13 1
CP000301_2705 CDS_2971329-2972435 47.5 4.9e-13 1
CP000301_4570 CDS_5170057-5171442 45.5 1.7e-12 2
CP000301_4546 CDS_5139902-5137551 45.1 2.4e-12 1
CP000301_0362 CDS_391234-393090 44.9 2.6e-12 1
CP000301_2550 CDS_2800801-2803086 44.7 3e-12 1
CP000301_1825 CDS_2003379-2004839 44.4 3.7e-12 1
CP000301_4596 CDS_5206020-5204680 42.8 1e-11 1
CP000301_4827 CDS_5452550-5451303 42.5 1.2e-11 1
CP000301_3171 CDS_3551853-3553961 42.2 1.5e-11 1
CP000301_1368 CDS_1511269-1509881 38.9 1.4e-10 1
CP000301_2854 CDS_3139527-3137071 38.8 1.4e-10 1
CP000301_0095 CDS_108539-106791 38.3 1.9e-10 1
CP000301_1205 CDS_1336452-1338050 37.1 4.2e-10 1
CP000301_3999 CDS_4502453-4503994 37.0 4.5e-10 1
CP000301_3095 CDS_3477291-3479522 36.8 5.4e-10 1
CP000301_4832 CDS_5459052-5456890 36.6 6e-10 1
CP000301_0355 CDS_379701-381023 36.3 7.4e-10 1
CP000301_1507 CDS_1660324-1662885 34.1 3e-09 1
CP000301_1662 CDS_1818847-1816067 33.8 3.8e-09 1
CP000301_3735 CDS_4204821-4207160 33.1 5.9e-09 1
CP000301_3712 CDS_4180689-4179331 29.8 5e-08 2
CP000301_2992 CDS_3325227-3326420 27.5 2.3e-07 1
CP000301_2199 CDS_2424304-2421896 27.2 2.7e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000301_1338 1/1 370 435 .. 1 87 [] 100.2 5.7e-28
CP000301_1851 1/1 417 482 .. 1 87 [] 96.3 7.4e-27
CP000301_0311 1/1 233 298 .. 1 87 [] 93.5 4.6e-26
CP000301_4453 1/1 304 369 .. 1 87 [] 91.1 2.2e-25
CP000301_1827 1/1 538 607 .. 1 87 [] 88.3 1.3e-24
CP000301_0647 1/1 422 487 .. 1 87 [] 86.1 5.4e-24
CP000301_3753 1/1 337 402 .. 1 87 [] 85.2 1e-23
CP000301_2039 1/1 263 332 .. 1 87 [] 81.8 9.4e-23
CP000301_4867 1/1 212 279 .. 1 87 [] 79.4 4.6e-22
CP000301_3889 1/1 958 1027 .. 1 87 [] 78.5 8e-22
CP000301_1759 1/1 350 419 .. 1 87 [] 76.2 3.6e-21
CP000301_0378 1/1 611 679 .. 1 87 [] 74.2 1.3e-20
CP000301_0592 1/1 332 397 .. 1 87 [] 73.3 2.4e-20
CP000301_4490 1/1 674 742 .. 1 87 [] 72.3 4.6e-20
CP000301_0819 1/1 395 460 .. 1 87 [] 71.9 6e-20
CP000301_4766 1/1 802 867 .. 1 87 [] 61.0 7.3e-17
CP000301_4848 1/1 230 295 .. 1 87 [] 59.5 1.9e-16
CP000301_0556 1/1 449 515 .. 1 87 [] 57.9 5.4e-16
CP000301_2548 1/1 139 194 .. 1 78 [. 52.8 1.6e-14
CP000301_1994 1/1 257 315 .. 1 87 [] 49.9 1e-13
CP000301_2705 1/1 134 198 .. 1 87 [] 47.5 4.9e-13
CP000301_4570 1/2 237 308 .. 1 87 [] 45.5 1.8e-12
CP000301_4546 1/1 415 481 .. 1 87 [] 45.1 2.4e-12
CP000301_0362 1/1 232 298 .. 1 87 [] 44.9 2.6e-12
CP000301_2550 1/1 506 577 .. 1 87 [] 44.7 3e-12
CP000301_1825 1/1 237 303 .. 1 87 [] 44.4 3.7e-12
CP000301_4596 1/1 228 286 .. 1 87 [] 42.8 1e-11
CP000301_4827 1/1 41 106 .. 1 87 [] 42.5 1.2e-11
CP000301_3171 1/1 338 403 .. 1 87 [] 42.2 1.5e-11
CP000301_1368 1/1 259 317 .. 1 87 [] 38.9 1.4e-10
CP000301_2854 1/1 447 514 .. 1 87 [] 38.8 1.4e-10
CP000301_0095 1/1 352 421 .. 1 87 [] 38.3 1.9e-10
CP000301_1205 1/1 157 228 .. 1 87 [] 37.1 4.2e-10
CP000301_3999 1/1 283 354 .. 1 87 [] 37.0 4.5e-10
CP000301_3095 1/1 368 434 .. 1 87 [] 36.8 5.4e-10
CP000301_4832 1/1 341 410 .. 1 87 [] 36.6 6e-10
CP000301_0355 1/1 209 275 .. 1 87 [] 36.3 7.4e-10
CP000301_1507 1/1 470 536 .. 1 87 [] 34.1 3e-09
CP000301_1662 1/1 543 609 .. 1 87 [] 33.8 3.8e-09
CP000301_3735 1/1 538 606 .. 1 87 [] 33.1 5.9e-09
CP000301_3712 1/2 208 253 .. 1 69 [. 29.0 8.3e-08
CP000301_2992 1/1 189 247 .. 1 87 [] 27.5 2.3e-07
CP000301_2199 1/1 413 479 .. 1 87 [] 27.2 2.7e-07

Alignments of top-scoring domains:
CP000301_1338: domain 1 of 1, from 370 to 435: score 100.2, E = 5.7e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla +sHE+RTP+++++g+a +Lle t+l++eq
CP000301_1 370 AKSEFLAIMSHEIRTPMNGVLGLANMLLE---------TDLDPEQ-- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++eti+++++ l+r++nd+Ldls++eag
CP000301_1 406 ----------HHAVETIRESGDNLQRILNDILDLSKLEAG 435

CP000301_1851: domain 1 of 1, from 417 to 482: score 96.3, E = 7.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHE+RTPL++I+g+a+lL + ++ls++q
CP000301_1 417 AKTDFLATMSHEIRTPLNGILGMAQLLDD---------SPLSAQQ-- 452

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ + +++ ll+++nd+Ldls+ieag
CP000301_1 453 ----------RQWLDAVAQSGSLLLAILNDILDLSKIEAG 482

CP000301_0311: domain 1 of 1, from 233 to 298: score 93.5, E = 4.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++I+g++ lLl+ t+l++eq
CP000301_0 233 AKSRFLAMASHEIRTPLNGIIGMSGLLLD---------THLTPEQ-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + ++ +++ l +Li++lLd+s+ieag
CP000301_0 269 ----------ATYARAVKTSGDALASLIEELLDYSKIEAG 298

CP000301_4453: domain 1 of 1, from 304 to 369: score 91.1, E = 2.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL++++g+a++L + t+l++ q
CP000301_4 304 AKSEFLANMSHEIRTPLNGVLGMADVLMR---------TDLTPVQ-- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y + i ++ l ++nd+Ld++++++g
CP000301_4 340 ----------RNYAQLIVTSGSLLMTILNDVLDMAKLDSG 369

CP000301_1827: domain 1 of 1, from 538 to 607: score 88.3, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL+aI+g++e++ +++ + l++e+
CP000301_1 538 TKSKFLANMSHELRTPLNAIIGFSEIMGSGMF------GSLGSEK-- 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + il ++++ll+ ind+Ld+s+ieag
CP000301_1 577 ---------YQEYCHDILTSGHYLLEVINDILDMSKIEAG 607

CP000301_0647: domain 1 of 1, from 422 to 487: score 86.1, E = 5.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE+RTPL++I+g+++lL + s+eq
CP000301_0 422 TKSQFLANMSHEIRTPLHGILGTVQLLAQ---------SRVSDEQ-- 457

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ ++++++ l+++++d+Ld++r+e+g
CP000301_0 458 ----------RSWVQALDQSGRLLRDILDDILDFTRLESG 487

CP000301_3753: domain 1 of 1, from 337 to 402: score 85.2, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+a++sHE+RTP++a++g+a Ll+ + l++eq
CP000301_3 337 AKSTFVAMMSHEIRTPMNAVLGLATNLLD---------SRLDAEQ-- 372

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + i+++++ ll+++nd+Ld+s++eag
CP000301_3 373 ----------RRSVVGIHDAGDALLDILNDILDFSKLEAG 402

CP000301_2039: domain 1 of 1, from 263 to 332: score 81.8, E = 9.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTPL+aI+g++e+++ + ++ ++
CP000301_2 263 AKSRFLAQMSHELRTPLNAILGFSEVMKS---------EIFGAHAVA 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++y i++++ +ll+Lin++Ldlsrieag
CP000301_2 301 VY--------KDYSADIHNSGVHLLNLINEILDLSRIEAG 332

CP000301_4867: domain 1 of 1, from 212 to 279: score 79.4, E = 4.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++++Ll +++++ +++
CP000301_4 212 MRVDFVANASHELRTPLAALSGFIDTLLG---------PARDDAKAR 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ +a+r+ rLi+dlL lsr e
CP000301_4 250 ----------ERFLGIMQTQAKRMARLIDDLLSLSRVELS 279

CP000301_3889: domain 1 of 1, from 958 to 1027: score 78.5, E = 8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak + la lsHE+RTPL+aI+g++e++ e + ++l+ e
CP000301_3 958 AKADVLARLSHEIRTPLNAILGFTEVMIE------ERFGALGNER-- 996

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i+ ++er ++++dlLdlsrie+g
CP000301_3 997 ---------YVEYMKDIRASGERVIAIVSDLLDLSRIETG 1027

CP000301_1759: domain 1 of 1, from 350 to 419: score 76.2, E = 3.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s fla++sHELRTPL+aI+g++e++ s+ r
CP000301_1 350 SRSHFLATMSHELRTPLNAIIGFSEMIVQ------EDVLMISAARR- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey + i +++++ll+ +n +Ld+s++e+g
CP000301_1 390 ----------KEYAQLINDSGQHLLSVVNGILDMSKMESG 419

CP000301_0378: domain 1 of 1, from 611 to 679: score 74.2, E = 1.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+ ++s ELR PLt+I+g+a+ L + ++ ++l+e+q
CP000301_0 611 MKVDFVHHVSYELRSPLTTIIGFAHFLSD------PSTGPLTEKQ-- 649

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+ i +++ ll++in++Ldl+ i+ag
CP000301_0 650 ----------EEYLSYITTSTNALLAIINNILDLATIDAG 679

CP000301_0592: domain 1 of 1, from 332 to 397: score 73.3, E = 2.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHEL++PLt++r ++e+L +++e+ r
CP000301_0 332 AIERFAADVSHELKNPLTSLRSAVETLPL----------AKNEKSR- 367

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le+i+++++rl+rLi+d+ d sr++a+
CP000301_0 368 ----------SRLLEVIEHDVKRLDRLISDISDASRLDAE 397

CP000301_4490: domain 1 of 1, from 674 to 742: score 72.3, E = 4.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+L+TPL+a++g+a++L++ + ++ls+ qr
CP000301_4 674 LRQALLTSISHDLKTPLAAVLGAASTLRDLS-------PKLSDAQR- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +i +e+erl+r i +lLd++r+eag
CP000301_4 713 ----------AELIGSIVEESERLNRFIANLLDMTRLEAG 742

CP000301_0819: domain 1 of 1, from 395 to 460: score 71.9, E = 6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+R+PLt+Irg+++ L++ ++
CP000301_0 395 ALGELMAGVAHEIRNPLTSIRGFVQFLEA-------------CDD-- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e+r+y i+r++++l+r+i +lL++ r + +
CP000301_0 427 ------VREWRRYSPEIIRQVDSLNRIITELLEFGRPRPP 460

CP000301_4766: domain 1 of 1, from 802 to 867: score 61.0, E = 7.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH++ +PL+a r+y+ L e + ++
CP000301_4 802 SKTRFLAAASHDILQPLNAARLYVTSLVE---------RQSGGDD-- 837

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e i++++e ++++i lLd+sr++ag
CP000301_4 838 ----------AKLVENIDESLEAIEEIIGALLDISRLDAG 867

CP000301_4848: domain 1 of 1, from 230 to 295: score 59.5, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ef+a ++HELR PLt++++ a+++l+ ++ ++
CP000301_4 230 HEREFTAFAAHELRSPLTGLKTQAQVALA---------ANDPAVS-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ il +++r rL+++lL+l+r++a
CP000301_4 266 ----------QVALQQILLAVDRATRLVRQLLTLARLDAR 295

CP000301_0556: domain 1 of 1, from 449 to 515: score 57.9, E = 5.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir +++ L++ +l+ee r
CP000301_0 449 AVGQLTGGVAHDFNNLLTIIRSATDFLRR---------RDLPEERR- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i + ++r + L +lL ++r +
CP000301_0 486 ----------RRYIDAISETVDRASTLTGQLLAFARRQPL 515

CP000301_2548: domain 1 of 1, from 139 to 194: score 52.8, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+l+HE+++PL++Irg+a+lL+ ++s+e+
CP000301_2 139 SVIALAAMLAHEIKNPLSGIRGAAQLLEQ----------AASSED-- 173

peLRledpeyreyletilreaerllrLindl<-*
r +++ i +ea+r+ L++++
CP000301_2 174 ----------RMLTRLICDEADRIVTLVDRM 194

CP000301_1994: domain 1 of 1, from 257 to 315: score 49.9, E = 1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ fl+n++HELRTPLt r+++e ++
CP000301_1 257 AQRSFLSNAAHELRTPLTNARTTIEQVQD------------------ 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ e + l++++ lL+l+ri a+
CP000301_1 286 ----------PRLRARLIAENQKLSSIVTMLLQLARISAE 315

CP000301_2705: domain 1 of 1, from 134 to 198: score 47.5, E = 4.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++HELRTPLt+++g ++ + + + s+++
CP000301_2 134 DMTAWNATIAHELRTPLTVLKGRLQGIAD---------GVFSPDE-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +l +++ l+rL++dl++ + ++ g
CP000301_2 170 -----------ALIRNLLLQVDGLSRLVEDLRTVTLADGG 198

CP000301_4570: domain 1 of 2, from 237 to 308: score 45.5, E = 1.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ a+l+HEL++PL+aI y++ ++ +l+ ++++s+e +
CP000301_4 237 TMGEMSAALAHELNQPLAAIANYLKGSRR----LLQDSSDKSAERI- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+++ ++a r + i++l+++ ++
CP000301_4 279 ----------RNALDKAAEQALRAGEVIQRLRQFVSRGET 308

CP000301_4546: domain 1 of 1, from 415 to 481: score 45.1, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L++I+g ++lL+++l + ++ +
CP000301_4 415 TIGQLTGGVAHDFNNLLAVILGSLSLLKKWL--------PDDPRT-- 451

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ +l+ aer L +lL ++r ++
CP000301_4 452 ----------SRLLDGALQGAERGATLTKRLLAFARRQEL 481

CP000301_0362: domain 1 of 1, from 232 to 298: score 44.9, E = 2.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H+L++ Lt+I+g++e+L + + ++ +q+
CP000301_0 232 AVGQLTGGLAHDLNNILTVISGTIEILAA---------AVADRPQL- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i+++a r +L ++lL ++r +
CP000301_0 269 ----------AAIAKMIDEAAVRGAELTQRLLAFARKQPL 298

CP000301_2550: domain 1 of 1, from 506 to 577: score 44.7, E = 3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++ ++l e++
CP000301_2 506 AWADVARRIAHEIKNPLTPIQLSAERIKRKF-------GKLIVEDK- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ ++ti+r+++ ++r+++++ ++r+ +
CP000301_2 545 -------GIFEQCTDTIIRQVDDIRRMVDEFSRFARMPKP 577

CP000301_1825: domain 1 of 1, from 237 to 303: score 44.4, E = 3.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e n++H+L+TPLt +r ae +l+ +e +
CP000301_1 237 GLKEVSDNIAHDLKTPLTRLRNRAEEALA---------KSHNEAE-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le+ ++e++ l r n lL ++r+e+g
CP000301_1 273 ---------YRTALERTIEESDALIRTFNALLMIARAESG 303

CP000301_4596: domain 1 of 1, from 228 to 286: score 42.8, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t +r+ +e +++
CP000301_4 228 DRTKMLAAISHDLRTPITRLRLRCEFIED------------------ 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l ++++++++++ +L + r + +
CP000301_4 257 ----------EACRNHMLGDLDQMRSMLESVLSFLRNGRN 286

CP000301_4827: domain 1 of 1, from 41 to 106: score 42.5, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ la+ +HE RTPLt+I++ ++lL + ++l++ +
CP000301_4 41 IVELALAAFAHEVRTPLTGILAVSDLLAT---------SDLDPRE-- 76

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ti+ ae+l L + d +r a
CP000301_4 77 ----------RRWVDTIKAGAEHLAGLATLFVDAARSSAS 106

CP000301_3171: domain 1 of 1, from 338 to 403: score 42.2, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++H++++ + ++ g a+ L++ + ++++
CP000301_3 338 SLGRLTGGVAHDFNNLMMVVGGSAQRLRR---------RHDDPQD-- 373

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ i+++++ L ++lL +sr a
CP000301_3 374 ----------RRALDMIDSAVNKATTLTRQLLSFSRRHAV 403

CP000301_1368: domain 1 of 1, from 259 to 317: score 38.9, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRT Lt ++ + l+ +
CP000301_1 259 QRTAMLAGVSHDLRTILTRFKLELALIGD------------------ 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++ + +++ L ++r ++g
CP000301_1 288 ----------GPDADGMRKDVDEMAGMLEAYLAFARGDSG 317

CP000301_2854: domain 1 of 1, from 447 to 514: score 38.8, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++++g +elL + ++ +
CP000301_2 447 AIGQLTGGIAHDFNNMLAVVIGSLELLDR---------KIGDPSAA- 483

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+y++ + + a+r +L ++lL +sr +
CP000301_2 484 ---------VRRYIDAAMDGAKRSAALTQRLLAFSRRQPL 514

CP000301_0095: domain 1 of 1, from 352 to 421: score 38.3, E = 1.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e l +++H+L++PL +I+g +e+L e ++ +++ e +
CP000301_0 352 FKNEILGTVAHDLKNPLGVILGRTEMLTE------LIGADAAKESV- 391

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+++++rl ++++ l + ++a
CP000301_0 392 ----------CAQVDHIRDATRRLTAMVDHLISDAMADAF 421

CP000301_1205: domain 1 of 1, from 157 to 228: score 37.1, E = 4.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt I+g++e+++++l ++ + + +
CP000301_1 157 AVGQLTGGVAHDFNNLLTIIIGNLEIAQRDL----GKLRDGVDGRL- 198

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ + + a+r L ++lL ++r +
CP000301_1 199 ----------RRLIGGAMSGAQRAATLTSRLLAFARRQPL 228

CP000301_3999: domain 1 of 1, from 283 to 354: score 37.0, E = 4.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PL+aI+ y + ++ +l g+ + + +++
CP000301_3 283 AMGEMASALAHELNQPLSAISNYMKGSRR----LLSGSNDPNRPKI- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ ++a r ++i++l+d+ ++
CP000301_3 325 ----------EAAMDRAAEQALRAGQIIRRLRDFVSRGES 354

CP000301_3095: domain 1 of 1, from 368 to 434: score 36.8, E = 5.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++H++++ Lt+I g+ae L e + ++ +++
CP000301_3 368 IVGQLSGGIAHDFNNLLTVIVGNAEFLGE---------QLKTRPDL- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + + i r++er +L + lL +sr ++
CP000301_3 405 ----------RSLADDIGRAGERGAELTQGLLAFSRRQTL 434

CP000301_4832: domain 1 of 1, from 341 to 410: score 36.6, E = 6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++++H++++ Lt+++g++ L++ ++ ++ +++
CP000301_4 341 AVGQLTSGVAHDFNNLLTVVLGNLGFLEK-----TLDRAGVDAKA-- 380

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+ +aer L +lL +sr +
CP000301_4 381 ----------HARLANIRTAAERGATLTAQLLAFSRRQRL 410

CP000301_0355: domain 1 of 1, from 209 to 275: score 36.3, E = 7.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I + a ++ + +++++
CP000301_0 209 QLDGLAAAAAHELGTPLSTIFLIAREVER--------SVPADSPL-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+t++++a+r+++++ + +ls +a+
CP000301_0 246 ----------AADLRTLREQAQRCREILAKITQLSSSGAP 275

CP000301_1507: domain 1 of 1, from 470 to 536: score 34.1, E = 3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L+aI+++ + Ll+ ++ +++
CP000301_1 470 MVGQLAGGIAHDFNNVLSAIMMANDFLLN--------AHKPTDPS-- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a r L+++lL +sr ++
CP000301_1 507 ----------FQDIMQIKQNATRAATLVRQLLAFSRRQTL 536

CP000301_1662: domain 1 of 1, from 543 to 609: score 33.8, E = 3.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g+ae+L e l + +l
CP000301_1 543 AIGQLTGGVAHDFNNTLTVITGTAEILFE----------SLADRPNL 579

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i+++a r +L lL ++r +
CP000301_1 580 ----------QQIAKMIDDAAGRGAELTKHLLAFARRQPL 609

CP000301_3735: domain 1 of 1, from 538 to 606: score 33.1, E = 5.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++H+L+ PL I ++a lL++ +++ rl
CP000301_3 538 ELESFAYVAAHDLKEPLRHIEAFAGLLKD--------ALSVDAKARL 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+ +++rl++Lindl ++sr +
CP000301_3 577 ----------STMVDGIEASSRRLRALINDLAEYSRVGRD 606

CP000301_3712: domain 1 of 2, from 208 to 253: score 29.0, E = 8.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HEL++P++ + g++++L++ qrl
CP000301_3 208 SLGRLVAGVAHELNNPISFVYGNIHTLER-------------YRQRL 241

peLRledpeyreyletilreae<-*
+yl i+ a+
CP000301_3 242 ----------GRYLGAIHGGAD 253

CP000301_2992: domain 1 of 1, from 189 to 247: score 27.5, E = 2.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +a++ H+LRTP+t +r+ ae ++
CP000301_2 189 SRMRVVAAAGHDLRTPITRMRLRAEFVED------------------ 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++ l+r+ + +l r eag
CP000301_2 218 ----------DDDRTMWLKDIDELDRIADSAIQLVREEAG 247

CP000301_2199: domain 1 of 1, from 413 to 479: score 27.2, E = 2.7e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ L +I g+++l+++ + +e +
CP000301_2 413 ALGLLAGGIAHDFNNVLQTIVGATHLIEN---------RPGDEAAN- 449

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + ++++aer +++ ++lL + +
CP000301_2 450 ----------RRLARLAISAAERGEAITSRLLSFNHKTEL 479


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 9 0|=
-13 51 3|*==
-12 184 111|======*====
-11 473 579|============================ *
-10 836 1074|================================================== *
-9 958 1109|========================================================= *
-8 827 830|================================================*
-7 633 523|==============================*=======
-6 352 301|=================*===
-5 249 165|=========*=====
-4 116 88|=====*=
-3 65 46|==*=
-2 36 24|=*=
-1 21 12|*=
0 14 6|*
1 5 3|*
2 3 1|*
3 2 0|=
> 4 52 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 248.0854
P(chi-square) = 0

Total sequences searched: 4886

Whole sequence top hits:
tophits_s report:
Total hits: 43
Satisfying E cutoff: 43
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 43
Satisfying E cutoff: 43
Total memory: 38K


Acknowledgements:

This research is funded by:

Developed by: