Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Shewanella denitrificans OS217  

Data for CP000302  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000302.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000302_0533 CDS_609025-612726 93.3 3.9e-26 1
CP000302_1180 CDS_1386206-1383288 90.4 2.7e-25 1
CP000302_1670 CDS_1959526-1964505 87.7 1.6e-24 1
CP000302_0657 CDS_766103-763542 87.6 1.6e-24 1
CP000302_3698 CDS_4466677-4470039 84.3 1.4e-23 1
CP000302_1904 CDS_2259130-2256323 80.5 1.7e-22 1
CP000302_1984 CDS_2366711-2364141 78.8 4.9e-22 1
CP000302_2670 CDS_3220185-3218887 78.1 8.2e-22 1
CP000302_2325 CDS_2774895-2777996 68.8 3.3e-19 1
CP000302_3435 CDS_4137880-4138917 60.1 9.9e-17 1
CP000302_0235 CDS_269383-267896 58.5 2.9e-16 1
CP000302_1310 CDS_1541799-1542869 55.6 1.8e-15 1
CP000302_3440 CDS_4142874-4144289 52.1 1.8e-14 1
CP000302_0551 CDS_631942-633237 50.1 6.8e-14 1
CP000302_3517 CDS_4250232-4251548 49.6 9.5e-14 1
CP000302_3583 CDS_4324551-4321930 47.3 4.2e-13 1
CP000302_1686 CDS_2000436-1996246 37.2 3.2e-10 1
CP000302_0110 CDS_121059-122306 35.5 9.4e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000302_0533 1/1 721 786 .. 1 87 [] 93.3 3.9e-26
CP000302_1180 1/1 342 407 .. 1 87 [] 90.4 2.7e-25
CP000302_1670 1/1 899 964 .. 1 87 [] 87.7 1.6e-24
CP000302_0657 1/1 276 341 .. 1 87 [] 87.6 1.6e-24
CP000302_3698 1/1 540 605 .. 1 87 [] 84.3 1.4e-23
CP000302_1904 1/1 541 608 .. 1 87 [] 80.5 1.7e-22
CP000302_1984 1/1 614 682 .. 1 87 [] 78.8 4.9e-22
CP000302_2670 1/1 205 271 .. 1 87 [] 78.1 8.2e-22
CP000302_2325 1/1 340 404 .. 1 87 [] 68.8 3.3e-19
CP000302_3435 1/1 126 191 .. 1 87 [] 60.1 9.9e-17
CP000302_0235 1/1 266 330 .. 1 87 [] 58.5 2.9e-16
CP000302_1310 1/1 133 199 .. 1 87 [] 55.6 1.8e-15
CP000302_3440 1/1 251 313 .. 1 87 [] 52.1 1.8e-14
CP000302_0551 1/1 214 279 .. 1 87 [] 50.1 6.8e-14
CP000302_3517 1/1 233 293 .. 1 87 [] 49.6 9.5e-14
CP000302_3583 1/1 647 715 .. 1 87 [] 47.3 4.2e-13
CP000302_1686 1/1 861 922 .. 1 83 [. 37.2 3.2e-10
CP000302_0110 1/1 205 269 .. 1 87 [] 35.5 9.4e-10

Alignments of top-scoring domains:
CP000302_0533: domain 1 of 1, from 721 to 786: score 93.3, E = 3.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+ + t l+ +q
CP000302_0 721 YKSEFLANMSHEIRTPMNAIIGMLQLASR---------TQLTLQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ +ae+llr+ind+Ld+s+ieag
CP000302_0 757 ----------QDYLNKAGFSAESLLRIINDILDFSKIEAG 786

CP000302_1180: domain 1 of 1, from 342 to 407: score 90.4, E = 2.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP000302_1 342 IKSEFLANMSHELRTPLNGVIGFARQLIK---------TPLHASQ-- 377

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll +ind+Ld+s++eag
CP000302_1 378 ----------LDYIKTIDRSATNLLGIINDILDFSKLEAG 407

CP000302_1670: domain 1 of 1, from 899 to 964: score 87.7, E = 1.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+++l + t+++++q
CP000302_1 899 AKSAFLANMSHEIRTPMNAILGMLQLVQH---------TDMTPQQ-- 934

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++ + +a++ll L+nd+Ld+s+i+ag
CP000302_1 935 ----------QDYVSKTEVAAQSLLGLLNDILDFSKIDAG 964

CP000302_0657: domain 1 of 1, from 276 to 341: score 87.6, E = 1.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHE+RTP++aI+g++++ le ++l+ +q
CP000302_0 276 SKSDFLANMSHEIRTPMNAIIGFVDIVLE---------GDLDQKQ-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l t++++a+ l +L+nd+Ld +++eag
CP000302_0 312 ----------SKHLMTVRNSAKDLHNLLNDILDVAKLEAG 341

CP000302_3698: domain 1 of 1, from 540 to 605: score 84.3, E = 1.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+++++l+ t+l + q
CP000302_3 540 AKSAFLANMSHEIRTPMNAIIGFSDVMLT---------TDLVAAQ-- 575

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ ti +a++ll+L+nd+Ld +++e g
CP000302_3 576 ----------RKYVTTINASANSLLHLLNDILDSAKLEKG 605

CP000302_1904: domain 1 of 1, from 541 to 608: score 80.5, E = 1.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+++sHELRTPL+aI+g+a+lL++++ ++l+ q
CP000302_1 541 AKSEFLSSMSHELRTPLNAILGFAQLLEKGQ-------PTLTHTQ-- 578

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++++ +ll+Lin++Ldl+ ie+g
CP000302_1 579 ----------EVRIQQIIKAGWYLLSLINEILDLAVIESG 608

CP000302_1984: domain 1 of 1, from 614 to 682: score 78.8, E = 4.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f+a++sHELRTPL++I+g+++++l +l ++ l+ q
CP000302_1 614 LKSMFIATMSHELRTPLNSIIGFSSVMLQGL------SGQLTGVQ-- 652

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i++++++ll +i+d+ d s+iea+
CP000302_1 653 ----------VDHLTRIHKASQHLLTIISDIIDVSKIEAE 682

CP000302_2670: domain 1 of 1, from 205 to 271: score 78.1, E = 8.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ +e ++++
CP000302_2 205 MRKEFVANVSHELKTPLTVLQGYLEIMQG--------MEEENSPK-- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ +++++er+++++++lL lsrie
CP000302_2 242 ----------AKPLKLMQQQTERMQSMVEQLLALSRIEDA 271

CP000302_2325: domain 1 of 1, from 340 to 404: score 68.8, E = 3.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+a++ HE+RTPL+aI+g++el l+ d+ + ++
CP000302_2 340 AKSQFMAAMGHEIRTPLNAIIGLLELTLR--------DERYQDNKH- 377

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ r+a++ll+L+nd+Ld+++ ea
CP000302_2 378 -------------LQVASRSANHLLNLLNDVLDYTKFEAD 404

CP000302_3435: domain 1 of 1, from 126 to 191: score 60.1, E = 9.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el e+++
CP000302_3 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELKEPEL- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ i+++a+rl++L+n+lL r +
CP000302_3 162 ----------KEFTSMIIEQADRLSNLVNRLLGPQRPSQH 191

CP000302_0235: domain 1 of 1, from 266 to 330: score 58.5, E = 2.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ ++lan+sHELRTP++ +rg +e++ +e+ +l+ +
CP000302_0 266 ARKRWLANISHELRTPVAILRGELEAMIDEV-------RPLTMDN-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++e+++l+rLi+dl l+ ++ g
CP000302_0 304 -------------VGSAHDEVKHLQRLIEDLHLLTSADIG 330

CP000302_1310: domain 1 of 1, from 133 to 199: score 55.6, E = 1.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya+ L ++ls+ +
CP000302_1 133 ALGKMVATLAHQVRTPLSAALLYASNLAS---------PKLSDTVK- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++++ ++ l+r++nd+L +++ +++
CP000302_1 170 ----------AKFQSKLIDRLNELERQVNDMLLMAKGRQE 199

CP000302_3440: domain 1 of 1, from 251 to 313: score 52.1, E = 1.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++++ l+++ + +e+
CP000302_3 251 NQQRLMGDISHELRTPLTRLQLALALARK---------KGQHSEE-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i ea +l++Li++lL+lsr
CP000302_3 287 -------------LERISYEALQLEALISELLTLSRVSLA 313

CP000302_0551: domain 1 of 1, from 214 to 279: score 50.1, E = 6.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++sH+L+TP++ +r+ +e+L+e ++++e +
CP000302_0 214 DNKLLSRAVSHDLKTPIARLRFGIEALEE----------TQNPELK- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++++ r+++ +++L+ lL ++r+++g
CP000302_0 250 ----------TKYFQRVNRDLDTMEDLVMTLLSYARLGQG 279

CP000302_3517: domain 1 of 1, from 233 to 293: score 49.6, E = 9.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000302_3 233 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e i ++e ++++in++ + r + +
CP000302_3 264 ----------QYLKEGIVTDIEDMDAIINQFIAYIRHDRE 293

CP000302_3583: domain 1 of 1, from 647 to 715: score 47.3, E = 4.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I+ +a+ ++e++ ++ q+
CP000302_3 647 ELDDFAYVASHDLKAPLRGIMQLASWIREDV-------QDSANTQT- 685

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl +++ + rl++L+ndlL +sri+
CP000302_3 686 ----------LDYLALMQNRITRLENLLNDLLAYSRIGRK 715

CP000302_1686: domain 1 of 1, from 861 to 922: score 37.2, E = 3.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++ + n+sHE+RTPL++I+g +e l ++++
CP000302_1 861 SKTREFDNISHEFRTPLAVILGRVEQRLG---------QNQTLTN-- 896

peLRledpeyreyletilreaerllrLindlLdlsr<-*
++++e i+ a+rl +++d+ ++ r
CP000302_1 897 ----------QRAFEAIDTVAKRLAIMVDDVIEMGR 922

CP000302_0110: domain 1 of 1, from 205 to 269: score 35.5, E = 9.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ +r +e L++ + s+e
CP000302_0 205 AVRGVTDNIAHDLRTPLSHLRIGIERLEA----------KPSAEL-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l+e++++l+ + +L l+rie+g
CP000302_0 240 ----------AGASADLLEELDHCLATFDAMLSLTRIEEG 269


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 7 0|=
-13 40 2|*===
-12 159 85|======*======
-11 366 445|============================= *
-10 573 825|============================================= *
-9 739 852|========================================================= *
-8 665 638|=================================================*==
-7 485 402|==============================*=======
-6 290 231|=================*=====
-5 178 127|=========*====
-4 110 67|=====*===
-3 52 35|==*=
-2 30 18|=*=
-1 17 9|*=
0 9 5|*
1 3 2|*
2 1 1|*
3 3 0|=
4 1 0|=
5 1 0|=
6 0 0|
7 0 0|
> 8 25 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 270.1874
P(chi-square) = 0

Total sequences searched: 3754

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: