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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Shewanella denitrificans OS217  

Data for CP000302  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000302.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000302_3452 CDS_4158500-4159564 77.0 1.9e-22 1
CP000302_3035 CDS_3667955-3669103 58.8 4.6e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000302_3452 1/1 157 225 .. 1 70 [] 77.0 1.9e-22
CP000302_3035 1/1 189 253 .. 1 70 [] 58.8 4.6e-17

Alignments of top-scoring domains:
CP000302_3452: domain 1 of 1, from 157 to 225: score 77.0, E = 1.9e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+RIAR+LHD g+sLs i+l++ela +l+ +++ + ar++l+e
CP000302_3 157 ERERIARDLHDIMGHSLSCIALKAELADKLV--AANQLdLARQQLQE 201

irelarealaevRrllgdLRpaal<-*
+ +are+l++vR++++ +++ +l
CP000302_3 202 LGLIARESLTQVRDTVSSYKHKGL 225

CP000302_3035: domain 1 of 1, from 189 to 253: score 58.8, E = 4.6e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIAR+LHD +g++L+a++lqle++ +++ + e + ++++
CP000302_3 189 ERLRIARDLHDILGHQLTALSLQLEVLSHQV-----ATETKPQVQQS 230

relarealaevRrllgdLRpaal<-*
++la++ la +R+++ + R++++
CP000302_3 231 QRLAKDLLANIRAVVKEKRHQTH 253


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 11 0|=
-13 98 0|=======
-12 172 41|==*==========
-11 290 344|===================== *
-10 704 798|=================================================== *
-9 774 906|======================================================== *
-8 577 698|========================================== *
-7 424 439|===============================*
-6 285 248|=================*===
-5 221 133|=========*======
-4 79 69|====*=
-3 53 35|==*=
-2 26 18|=*
-1 20 9|*=
0 4 4|*
1 4 2|*
2 4 1|*
3 4 0|=
4 0 0|
> 5 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 552.1956
P(chi-square) = 0

Total sequences searched: 3754

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: