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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Pseudomonas stutzeri A1501  

Data for CP000304  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000304.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000304_2616 CDS_2898898-2901618 107.4 4.4e-30 1
CP000304_1420 CDS_1538961-1536217 91.3 1.6e-25 1
CP000304_3204 CDS_3548553-3551396 91.0 1.9e-25 1
CP000304_0051 CDS_60371-57465 87.9 1.5e-24 1
CP000304_1110 CDS_1231521-1235240 87.2 2.2e-24 1
CP000304_0424 CDS_480509-479208 80.8 1.5e-22 1
CP000304_0303 CDS_360116-359247 80.5 1.8e-22 1
CP000304_3903 CDS_4324225-4326618 79.5 3.4e-22 1
CP000304_0903 CDS_1018485-1019753 78.5 6.7e-22 1
CP000304_3800 CDS_4214704-4211192 77.8 1e-21 1
CP000304_0200 CDS_237402-239957 76.1 3.3e-21 1
CP000304_2653 CDS_2936276-2934912 75.8 4e-21 1
CP000304_3562 CDS_3933752-3935344 71.9 5e-20 1
CP000304_3670 CDS_4064540-4062540 71.5 6.6e-20 1
CP000304_0054 CDS_64869-62488 70.3 1.4e-19 1
CP000304_3969 CDS_4408096-4409883 70.2 1.5e-19 1
CP000304_0348 CDS_401510-400266 66.5 1.7e-18 1
CP000304_0056 CDS_68450-65412 65.6 3e-18 1
CP000304_3311 CDS_3665845-3667182 65.4 3.5e-18 1
CP000304_1616 CDS_1758650-1760251 63.3 1.3e-17 1
CP000304_3340 CDS_3694448-3693504 63.3 1.4e-17 1
CP000304_3645 CDS_4033494-4034675 63.2 1.5e-17 1
CP000304_2485 CDS_2770957-2769770 60.8 6.9e-17 1
CP000304_3480 CDS_3849296-3853576 60.7 7.3e-17 1
CP000304_3958 CDS_4392144-4393544 60.1 1.1e-16 1
CP000304_2398 CDS_2679719-2681077 57.8 5.1e-16 1
CP000304_0894 CDS_1011469-1009997 56.5 1.2e-15 1
CP000304_2719 CDS_3000823-3004290 54.8 3.4e-15 1
CP000304_3039 CDS_3349060-3347702 54.7 3.8e-15 1
CP000304_2039 CDS_2257816-2259516 53.3 9e-15 1
CP000304_0285 CDS_337437-338768 52.3 1.7e-14 1
CP000304_3797 CDS_4209770-4208580 51.9 2.3e-14 1
CP000304_0361 CDS_416568-418046 50.5 5.7e-14 1
CP000304_1947 CDS_2152003-2154642 49.5 1.1e-13 1
CP000304_3215 CDS_3560861-3563815 47.7 3.5e-13 1
CP000304_1107 CDS_1229758-1227722 46.9 6e-13 1
CP000304_2652 CDS_2933589-2934911 44.2 3.6e-12 1
CP000304_2820 CDS_3100582-3102669 43.9 4.3e-12 1
CP000304_4098 CDS_4537784-4540189 43.7 4.8e-12 1
CP000304_1653 CDS_1805394-1803103 41.7 1.8e-11 1
CP000304_0265 CDS_308079-303325 41.6 1.9e-11 1
CP000304_3086 CDS_3399055-3401070 40.6 3.8e-11 2
CP000304_2824 CDS_3106616-3108301 39.8 6.3e-11 1
CP000304_0080 CDS_95390-93585 39.4 8e-11 1
CP000304_1916 CDS_2115868-2112884 38.5 1.5e-10 1
CP000304_1901 CDS_2092021-2094474 36.9 4.2e-10 2
CP000304_0314 CDS_372692-370293 36.8 4.5e-10 1
CP000304_3397 CDS_3760169-3762457 36.3 6e-10 1
CP000304_4096 CDS_4534974-4537244 35.7 9.2e-10 1
CP000304_0302 CDS_359257-357308 33.7 3.3e-09 1
CP000304_0386 CDS_442486-441026 32.8 6e-09 2
CP000304_2385 CDS_2668984-2667533 32.6 6.9e-09 1
CP000304_0151 CDS_179431-177548 31.3 1.6e-08 1
CP000304_0992 CDS_1114925-1116178 29.1 6.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000304_2616 1/1 271 336 .. 1 87 [] 107.4 4.4e-30
CP000304_1420 1/1 408 473 .. 1 87 [] 91.3 1.6e-25
CP000304_3204 1/1 424 489 .. 1 87 [] 91.0 1.9e-25
CP000304_0051 1/1 461 529 .. 1 87 [] 87.9 1.5e-24
CP000304_1110 1/1 603 671 .. 1 87 [] 87.2 2.2e-24
CP000304_0424 1/1 205 272 .. 1 87 [] 80.8 1.5e-22
CP000304_0303 1/1 55 123 .. 1 87 [] 80.5 1.8e-22
CP000304_3903 1/1 438 506 .. 1 87 [] 79.5 3.4e-22
CP000304_0903 1/1 210 275 .. 1 87 [] 78.5 6.7e-22
CP000304_3800 1/1 491 559 .. 1 87 [] 77.8 1e-21
CP000304_0200 1/1 621 689 .. 1 87 [] 76.1 3.3e-21
CP000304_2653 1/1 235 301 .. 1 87 [] 75.8 4e-21
CP000304_3562 1/1 309 375 .. 1 87 [] 71.9 5e-20
CP000304_3670 1/1 418 483 .. 1 87 [] 71.5 6.6e-20
CP000304_0054 1/1 562 630 .. 1 87 [] 70.3 1.4e-19
CP000304_3969 1/1 375 443 .. 1 87 [] 70.2 1.5e-19
CP000304_0348 1/1 185 250 .. 1 87 [] 66.5 1.7e-18
CP000304_0056 1/1 781 849 .. 1 87 [] 65.6 3e-18
CP000304_3311 1/1 225 291 .. 1 87 [] 65.4 3.5e-18
CP000304_1616 1/1 308 373 .. 1 87 [] 63.3 1.3e-17
CP000304_3340 1/1 195 261 .. 1 87 [] 63.3 1.4e-17
CP000304_3645 1/1 173 238 .. 1 87 [] 63.2 1.5e-17
CP000304_2485 1/1 177 243 .. 1 87 [] 60.8 6.9e-17
CP000304_3480 1/1 1059 1127 .. 1 87 [] 60.7 7.3e-17
CP000304_3958 1/1 247 312 .. 1 87 [] 60.1 1.1e-16
CP000304_2398 1/1 226 290 .. 1 87 [] 57.8 5.1e-16
CP000304_0894 1/1 251 316 .. 1 87 [] 56.5 1.2e-15
CP000304_2719 1/1 792 859 .. 1 87 [] 54.8 3.4e-15
CP000304_3039 1/1 231 297 .. 1 87 [] 54.7 3.8e-15
CP000304_2039 1/1 195 260 .. 1 87 [] 53.3 9e-15
CP000304_0285 1/1 221 280 .. 1 87 [] 52.3 1.7e-14
CP000304_3797 1/1 169 242 .. 1 87 [] 51.9 2.3e-14
CP000304_0361 1/1 272 338 .. 1 87 [] 50.5 5.7e-14
CP000304_1947 1/1 514 578 .. 1 87 [] 49.5 1.1e-13
CP000304_3215 1/1 756 822 .. 1 87 [] 47.7 3.5e-13
CP000304_1107 1/1 303 371 .. 1 87 [] 46.9 6e-13
CP000304_2652 1/1 225 289 .. 1 87 [] 44.2 3.6e-12
CP000304_2820 1/1 322 390 .. 1 87 [] 43.9 4.3e-12
CP000304_4098 1/1 427 496 .. 1 87 [] 43.7 4.8e-12
CP000304_1653 1/1 383 450 .. 1 87 [] 41.7 1.8e-11
CP000304_0265 1/1 1213 1281 .. 1 87 [] 41.6 1.9e-11
CP000304_2824 1/1 195 260 .. 1 87 [] 39.8 6.3e-11
CP000304_0080 1/1 368 436 .. 1 87 [] 39.4 8e-11
CP000304_1916 1/1 630 696 .. 1 87 [] 38.5 1.5e-10
CP000304_0314 1/1 427 495 .. 1 87 [] 36.8 4.5e-10
CP000304_3397 1/1 391 456 .. 1 87 [] 36.3 6e-10
CP000304_4096 1/1 525 593 .. 1 87 [] 35.7 9.2e-10
CP000304_0302 1/1 282 350 .. 1 87 [] 33.7 3.3e-09
CP000304_0386 2/2 276 338 .. 1 87 [] 32.6 6.9e-09
CP000304_2385 1/1 282 310 .. 1 29 [. 32.6 6.9e-09
CP000304_0151 1/1 403 471 .. 1 87 [] 31.3 1.6e-08
CP000304_1901 2/2 445 513 .. 1 87 [] 29.6 4.8e-08
CP000304_0992 1/1 203 268 .. 1 87 [] 29.1 6.9e-08
CP000304_3086 1/2 412 462 .. 1 73 [. 28.3 1.1e-07

Alignments of top-scoring domains:
CP000304_2616: domain 1 of 1, from 271 to 336: score 107.4, E = 4.4e-30
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTPL++I+g+++lL++ ++l++ q
CP000304_2 271 IKSEFLANMSHEIRTPLNGILGFTQLLQK---------SDLTPRQ-- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ti+++a++ll +in++Ld+s+ieag
CP000304_2 307 ----------QDYLGTIEKSADSLLGIINEILDFSKIEAG 336

CP000304_1420: domain 1 of 1, from 408 to 473: score 91.3, E = 1.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTPL++++g+++lL+e t+l+ q
CP000304_1 408 AKSRFLAKMSHEIRTPLNGVLGMLQLLRE---------TPLDRSQ-- 443

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ti +++++l + ind+Ld++ri++g
CP000304_1 444 ----------QFYLDTISSSGNSLMAVINDILDYARIGSG 473

CP000304_3204: domain 1 of 1, from 424 to 489: score 91.0, E = 1.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +fl+ +sHELRTP+++++g++elLl t ls++q
CP000304_3 424 TKADFLSKISHELRTPMNGVLGMSELLLG---------TSLSAKQ-- 459

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti+++++ ll+Lin++Ld+s++e+g
CP000304_3 460 ----------RDYVQTIHSSGNELLNLINEILDISKLESG 489

CP000304_0051: domain 1 of 1, from 461 to 529: score 87.9, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef++++sHELRTPLtaIrg++ +L ++ + ls+e
CP000304_0 461 MKTEFISTVSHELRTPLTAIRGALGMLIG------GIAGQLSDEA-- 499

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l ++++ +erl rLind+Ld++++eag
CP000304_0 500 ----------RPLLTIAHKNSERLVRLINDILDIEKLEAG 529

CP000304_1110: domain 1 of 1, from 603 to 671: score 87.2, E = 2.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ +++ L+ ++ ++l+++q
CP000304_1 603 YKSEFLANMSHELRTPLNSILILSDQLRQNGA------GNLNDKQ-- 641

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i+r+++ ll+Lind+Ldl++ie+g
CP000304_1 642 ----------VRHADIIHRAGHELLQLINDVLDLAKIESG 671

CP000304_0424: domain 1 of 1, from 205 to 272: score 80.8, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPLt+I gy+e+Lle + r
CP000304_0 205 MRKDFVANVSHELRTPLTVIAGYLETLLE---------NAEAVNPR- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++l+ + ++a r+++L+ndlL l+r+e+
CP000304_0 242 ---------WLRALQQMNQQAGRMQHLLNDLLLLARLETS 272

CP000304_0303: domain 1 of 1, from 55 to 123: score 80.5, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl+++sHE+RTPL +I+ + lL +eld ++ls+eq
CP000304_0 55 LKSRFLSYMSHEFRTPLGSILSITRLLSDELD------GPLSPEQ-- 93

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ + ++a l+++++dlLdl++ieag
CP000304_0 94 ----------HKQVRFVSSAASELSEMVDDLLDLAKIEAG 123

CP000304_3903: domain 1 of 1, from 438 to 506: score 79.5, E = 3.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++++sHELRTPLt+I+g++ l+ + +++++
CP000304_3 438 MKNDFVSTVSHELRTPLTSISGALGLIVG------GALGKAPPSM-- 476

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le++++ + rl +LindlLd+++i ag
CP000304_3 477 ----------QQMLEIAYSNSLRLGHLINDLLDMEKIAAG 506

CP000304_0903: domain 1 of 1, from 210 to 275: score 78.5, E = 6.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a++sHELRTPL +++g++elLl+ ++l+e
CP000304_0 210 RERLFTADVSHELRTPLMVMLGACELLLA---------GDLPERS-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e+i+r+ae +++L++ +L l+r++
CP000304_0 246 ----------RRQAERIQRAAEEMQALVDTFLLLARARPD 275

CP000304_3800: domain 1 of 1, from 491 to 559: score 77.8, E = 1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL + d++ls++q
CP000304_3 491 YKSEFLANMSHELRTPLNSSLILAKLLAD------NPDGNLSDDQ-- 529

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+++++ ll Lind+Ld+s+ eag
CP000304_3 530 ----------VQFARSIYSAGNDLLTLINDILDISKVEAG 559

CP000304_0200: domain 1 of 1, from 621 to 689: score 76.1, E = 3.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+++l+++sHELRTPL+aI+g+a+l+++ ++++e ++
CP000304_0 621 AKGRLLSGISHELRTPLNAILGFAQLMRM----------DCDDESQA 657

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +eyl+ il ++++l++L+ ++L+ s ++++
CP000304_0 658 EA--------AEYLDEILLASRHLNQLLGEILEWSSLQQE 689

CP000304_2653: domain 1 of 1, from 235 to 301: score 75.8, E = 4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTPL+ +++++e++l+ +s eq
CP000304_2 235 RLSNFSADIAHELRTPLSNLMTHTEVALT---------RGRSLEQ-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ l++ l+e++r++r+i+d+L l+++++g
CP000304_2 271 ---------YQDNLHSNLEELQRMSRMIDDMLFLAKADNG 301

CP000304_3562: domain 1 of 1, from 309 to 375: score 71.9, E = 5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE+R+PL aI+ +a+lL+e ++el+ ++
CP000304_3 309 SLGRLTASIAHEIRNPLGAISHAAQLLQE--------SEELDGPD-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++i++ ++r++ i+++L+lsr ++
CP000304_3 346 ----------RRLAQIIQDHSRRMNLVIENVLQLSRRRQA 375

CP000304_3670: domain 1 of 1, from 418 to 483: score 71.5, E = 6.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efl+n+sHELRTP+ +++g++elL + +e +ee
CP000304_3 418 LKDEFLSNISHELRTPMMGVMGALELLPA---------SETPEEL-- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +++ +a+ + rL+n++L ls ++ag
CP000304_3 454 ----------QQYQHIATGSARDMMRLVNNILVLSELRAG 483

CP000304_0054: domain 1 of 1, from 562 to 630: score 70.3, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef++++sHELRTPLt+I g++ l ++ +e + +
CP000304_0 562 LQREFISTVSHELRTPLTSITGALALVCSNVM------GEVPGQM-- 600

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+++++ ++rl +Li+dlLd+ ++ ag
CP000304_0 601 ----------RELLDIAQQNSQRLGALIDDLLDMDKLHAG 630

CP000304_3969: domain 1 of 1, from 375 to 443: score 70.2, E = 1.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ +sHELRTP+t+++++ +lL+e+l + ++++ +
CP000304_3 375 VRNEFVLRASHELRTPVTGMQMAFSLLRERL------RYPADSRE-- 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++t+++e +rl rLindlL +sr ++g
CP000304_3 414 ----------SDLFDTVHEEMQRLVRLINDLLNFSRYQSG 443

CP000304_0348: domain 1 of 1, from 185 to 250: score 66.5, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+HE+++PL +Irg+a+lL + el+ee++
CP000304_0 185 TTKMLVRGLAHEIKNPLGGIRGAAQLLAR----------ELPEEHL- 220

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e+i++ea+rl++L++++L ++ +
CP000304_0 221 ----------KDYTEVIIEEADRLRNLVDRMLGSNKLPSL 250

CP000304_0056: domain 1 of 1, from 781 to 849: score 65.6, E = 3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kse+++ +sHELRTPLt+I+g++ l+ ++l+e+ +
CP000304_0 781 MKSELVSIVSHELRTPLTSISGALGLIVG---------GALGEPS-P 817

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L ++l ++++ + rl rL++dlLd+ ++ ag
CP000304_0 818 TML--------QMLTIAHQNSLRLGRLVDDLLDMDKLVAG 849

CP000304_3311: domain 1 of 1, from 225 to 291: score 65.4, E = 3.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTP++ +++++e+ l+ +++ +
CP000304_3 225 RLSNFSADIAHELRTPVSNLMTHTEVVLT---------KKRNIDA-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e l + l+e++r++r+i+d+L l++ ++g
CP000304_3 261 ---------YEENLYSNLEELKRMSRIIDDMLFLAKSDNG 291

CP000304_1616: domain 1 of 1, from 308 to 373: score 63.3, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HELRTP++ +r+ +e+ e ++++e r
CP000304_1 308 VQREMVSAVAHELRTPVARLRFGLEMTAE----------AQTDEAR- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ++ +++ l++L++++L +sr+e g
CP000304_1 344 ----------QKYLAGMDGDIDDLDALVDEMLVYSRLERG 373

CP000304_3340: domain 1 of 1, from 195 to 261: score 63.3, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +++HEL+TPL+ ++g a++ l e+s eq
CP000304_3 195 QLSQFSDDVAHELKTPLNNLIGKAQVTLV---------RERSKEQ-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre le+ +e+er++r+++d+L l+++ +
CP000304_3 231 ---------YREVLESSVEELERMDRIVSDMLFLAQASHA 261

CP000304_3645: domain 1 of 1, from 173 to 238: score 63.2, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a l H+LRTPL++I+++++lL +++ te++ +q+
CP000304_3 173 QREQFIALLGHDLRTPLASIQAASDLLVRRS-------TERGTQQL- 211

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ +++r +r+++dl+d++r + g
CP000304_3 212 -------------AEHVRTSSQRASRMVDDLMDFARGQLG 238

CP000304_2485: domain 1 of 1, from 177 to 243: score 60.8, E = 6.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H++RTPL++ ++ya+ L+ + lse+q+
CP000304_2 177 SLGRMVASLAHQIRTPLSTALLYASHLEQ---------GGLSEQQQ- 213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ ++ l+++++d+L ++r + +
CP000304_2 214 ----------QRFAGSLKARLHELEHQVRDMLVFARGDLP 243

CP000304_3480: domain 1 of 1, from 1059 to 1127: score 60.7, E = 7.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f+a lsHEL+ PL+ I+++++l + + + ++ + +
CP000304_3 1059 QKDQFFAVLSHELKHPLNLIQLNTDLVARSQ-------AVKNNPSL- 1097

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i++++++ +r+i+dl+d sri++g
CP000304_3 1098 ----------HKATQSIQNAVRSQSRIIDDLMDVSRIRTG 1127

CP000304_3958: domain 1 of 1, from 247 to 312: score 60.1, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELRTPL+a+++ +el l+ ++++
CP000304_3 247 RQARFIADASHELRTPLAALKARIELGLR----------DADPAA-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r le + ++++ +L n+lL l+rie+g
CP000304_3 282 ---------WRSTLEDAGQSTDKVIHLANQLLSLARIESG 312

CP000304_2398: domain 1 of 1, from 226 to 290: score 57.8, E = 5.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELR PL+ +r ++ l+++ +++ +r
CP000304_2 226 SQRQLLRDVSHELRSPLARLRIALGLAER-----------ATPTER- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ +e +rl++Li+++L+lsr++a+
CP000304_2 261 ----------EVIWPRLAKECDRLEALISEILELSRLDAE 290

CP000304_0894: domain 1 of 1, from 251 to 316: score 56.5, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRTPL+++r +a+ +l ++see+r
CP000304_0 251 REKRFIADAAHELRTPLAVLRIHAQNALQ----------AASEEER- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le ++ ++r r + +lL+l+r+e
CP000304_0 287 ----------ELALEQLIAGVDRTTRVVTQLLTLARLEPS 316

CP000304_2719: domain 1 of 1, from 792 to 859: score 54.8, E = 3.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++ +L ++ ++l+ e
CP000304_2 792 SKTRFLAAVSHDLMQPLNAARLFSAALSHQQ-------SALPKEA-- 829

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ +++++++ ++Li dlLd+sr+e+g
CP000304_2 830 ----------QELVQHLDSALRSAEDLITDLLDISRLESG 859

CP000304_3039: domain 1 of 1, from 231 to 297: score 54.7, E = 3.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +l+HE+RTPL ++g ++ Ll ++s e+
CP000304_3 231 RLSRFSEDLAHEMRTPLGNLMGQTQQLLH---------RARSVED-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l + ++e erl r+i+++L l+r+e++
CP000304_3 267 ---------YQALLVSNQEEYERLARMIDNMLFLARAEQP 297

CP000304_2039: domain 1 of 1, from 195 to 260: score 53.3, E = 9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++ la++sH+L +PL+a r+++++L+e +l+ +
CP000304_2 195 SKDKYLAAASHDLLQPLNAARLLISTLRE---------RALPQGE-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e++++++e ++L+ dlLd+s++++
CP000304_2 231 ----------RHLVERAHQALEGAEDLLTDLLDISKLDQA 260

CP000304_0285: domain 1 of 1, from 221 to 280: score 52.3, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r+ +el+ +
CP000304_0 221 ERELMLAGVSHDLRTPLTRLRLSLELMASD----------------- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e ++r++e ++++++++L + r ++
CP000304_0 251 ----------DELTEDMIRDVEDMNAILDQFLAFVRDGSD 280

CP000304_3797: domain 1 of 1, from 169 to 242: score 51.9, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sHEL+TPL+++++ ++l + +l + + see +
CP000304_3 169 MRDDFMSIVSHELKTPLNTLILEVQLRKLQLSR--NDLGGVSEERL- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++++ +r++++l rLi+d+Ld sri++g
CP000304_3 213 ----------RKMVDKDERQIQSLIRLIDDMLDVSRIRTG 242

CP000304_0361: domain 1 of 1, from 272 to 338: score 50.5, E = 5.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HEL PL++I g a+ l+ d+el e +
CP000304_0 272 AVGRLAAGVAHELGSPLSVIDGKAQRVLR--------DEELAEAH-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l i++++ rl++++++lLd+ r+
CP000304_0 309 ----------RRALLQIRQQVARLSAIVRQLLDFGRAAGS 338

CP000304_1947: domain 1 of 1, from 514 to 578: score 49.5, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++++Lle + +s+ +
CP000304_1 514 SKTKFLAAVSHDLLQPLNAARLFTSALLE--------QPGASSGGL- 551

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i +++e ++L+ l d+s+++ag
CP000304_1 552 -------------IRNISNSLEDVENLLGTLVDISKLDAG 578

CP000304_3215: domain 1 of 1, from 756 to 822: score 47.7, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+t+I +a+ L++ + e + e
CP000304_3 756 SIGRLAAGVAHEIGNPITGIACLAQNLRD--------EREGDGEI-- 792

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ i+++++r +r+++ l+ ++ +++
CP000304_3 793 ----------VEISAQIIEQTKRVSRIVQSLMSFAHAGER 822

CP000304_1107: domain 1 of 1, from 303 to 371: score 46.9, E = 6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+H++++ L +I g + lL+++ld + + ++
CP000304_1 303 AVGQLTSGLAHDFNNLLGGIVGSLGLLERRLD------QGRHDDL-- 341

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l ++++a+r +L +lL +sr +
CP000304_1 342 ----------RRHLANAQSSADRAAALTHRLLAFSRRQPL 371

CP000304_2652: domain 1 of 1, from 225 to 289: score 44.2, E = 3.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++HELR PLt+I+++++++++ te + +++
CP000304_2 225 GERRLTGDAAHELRSPLTVIKTHLQVARM---------TEGAAAELA 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++ a+rl+r +++lL l+r e
CP000304_2 263 -------------LANAEAGADRLQRTLEQLLLLARVEGS 289

CP000304_2820: domain 1 of 1, from 322 to 390: score 43.9, E = 4.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g+++l++ +ld t + ++
CP000304_2 322 AVGQLTGGIAHDFNNMLTGIIGALDLIRLRLD------TGRHDDL-- 360

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ ++ +a+r +L ++lL +sr +
CP000304_2 361 ----------PRYLDAAHGSAQRAASLTQRLLAFSRRQPL 390

CP000304_4098: domain 1 of 1, from 427 to 496: score 43.7, E = 4.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++H++++ Lt+I++ a+ L+++l+ + ++ e
CP000304_4 427 AVGQLTAGVAHDFNNLLTVILTSASFLKNDLE------QGAPLERS- 466

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i++++er L +lL ++r ++
CP000304_4 467 ----------LRRLQYIRESGERGATLTGQLLAFARRQQL 496

CP000304_1653: domain 1 of 1, from 383 to 450: score 41.7, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L++I g elL+++l ++ ++ +
CP000304_1 383 AMGKLTGGIAHDFNNLLAVIGGSFELLRKRL-------PPSDPRT-- 420

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e l++++r L+++lL ++r ++
CP000304_1 421 ----------ESLIENGLQATRRGAGLVQRLLSFARKQEL 450

CP000304_0265: domain 1 of 1, from 1213 to 1281: score 41.6, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ Lt+++g ++l+++++ + s ++
CP000304_0 1213 AIGQLTGGLAHDFNNMLTGVLGSLDLIQRRV-------ASGSTGDL- 1251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ + +a+r +L +lL ++r ++
CP000304_0 1252 ----------DRYIDAATTSANRAAALTHRLLAFARRQSL 1281

CP000304_2824: domain 1 of 1, from 195 to 260: score 39.8, E = 6.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I+g +++L + + ++
CP000304_2 195 AIGQLTGGIAHDFNNLLMVISGGLDMLDR---------RADPARR-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++a+r +L ++lL +sr ++
CP000304_2 231 ----------ERLMAGMRQAAQRGTSLTRQLLAFSRRQSL 260

CP000304_0080: domain 1 of 1, from 368 to 436: score 39.4, E = 8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ + a++sHEL++PL+aIr ya+ ++ l + +r
CP000304_0 368 ALGTMSASISHELNQPLAAIRSYADNARV-----------LLDHERV 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ r+ l+ i + + r+ ++i l+ ++r ++
CP000304_0 404 DEA-------RDNLRLISELTARMASIIAHLRAFARRDQH 436

CP000304_1916: domain 1 of 1, from 630 to 696: score 38.5, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ L a++g ++lL++ + ++++
CP000304_1 630 ALGNLTGGIAHDFNNLLMAVLGSLDLLRR--------RMPADPAL-- 666

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ aer +L ++L+++r ++
CP000304_1 667 ----------LRLVDNARAGAERGASLTARMLTFARKQEL 696

CP000304_0314: domain 1 of 1, from 427 to 495: score 36.8, E = 4.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g ++l++++ + + e+
CP000304_0 427 AVGQLTGGIAHDFNNMLTGIIGGLDLIQRYIQ------SGRHGET-- 465

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + +a+r +L +lL ++r +
CP000304_0 466 ----------QRFIDAAVTSANRAAALTHRLLAFARRQPL 495

CP000304_3397: domain 1 of 1, from 391 to 456: score 36.3, E = 6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a++sHE+++ L ++ + ++l+++ l++ r+
CP000304_3 391 ALGNLTAGISHEFNNLLQSMTMGLQLAEM-----------LTSHPRA 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e +r+a+r rL + l+++sr ++
CP000304_3 427 ----------RRAIEGCQRSARRATRLTRHLMTFSRSRTA 456

CP000304_4096: domain 1 of 1, from 525 to 593: score 35.7, E = 9.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL I gy+elL e +++ lse
CP000304_4 525 ELEAFSYSVSHDLRAPLRHIAGYTELLGE------MESSQLSERG-- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ i ++a+ L+++lL +s+++
CP000304_4 564 ----------MRFLDNIADAARFAGTLVDNLLSFSQMGRA 593

CP000304_0302: domain 1 of 1, from 282 to 350: score 33.7, E = 3.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt+I++ +el++ r+
CP000304_0 282 ALGKLTGGIAHDFNNLLTGIITGIELMKQ----------------RI 312

peLR...ledpeyreyletilreaerllrLindlLdlsrieag<-*
e+R ++ ++ + +l++a++ +L n+lL ++r +
CP000304_0 313 IEGRadsV-----LRFADAALSSARSAASLTNRLLAFARKQPL 350

CP000304_0386: domain 2 of 2, from 276 to 338: score 32.6, E = 6.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + l +l+H L+TPL++++g e+L + + +s eq
CP000304_0 276 QYRNSLGDLAHSLKTPLSVLQGVGETLSA---------QSQSREQ-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++er++++i L+ + ++
CP000304_0 312 -------------AQVMQAQIERMSQQIGYQLQRASLGKS 338

CP000304_2385: domain 1 of 1, from 282 to 310: score 32.6, E = 6.9e-09
*->akseflanlsHELRTPLtaIrgyaelLle<-*
+++++++++sH+LRTP+t +r+ +elL++
CP000304_2 282 ERGQLFSAISHDLRTPITRLRLRVELLED 310

CP000304_0151: domain 1 of 1, from 403 to 471: score 31.3, E = 1.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+l+HE+++PLta+r+ + L+ ld + + e
CP000304_0 403 ALGQMSAALAHEINQPLTALRMQLASLRLLLD------SGREGEV-- 441

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l ++ +er+ +L + l +++r
CP000304_0 442 ----------REGLGHVEGLLERMAALTSHLKTFARKSPA 471

CP000304_1901: domain 2 of 2, from 445 to 513: score 29.6, E = 4.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g+++l+ + + +
CP000304_1 445 AVGQLTGGLAHDFNNLLAGISGALDLMGM---------RIAQGRLN- 481

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +y ++++a+r +L +lL +sr ++
CP000304_1 482 --------DIDKYMLAAQSAAKRAAALTHRLLAFSRRQTL 513

CP000304_0992: domain 1 of 1, from 203 to 268: score 29.1, E = 6.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +a+++HEL TPL++++ +++ L+ e +++q+
CP000304_0 203 AVATQAAGAAHELGTPLATMSVLLKELRQ----------EYNDPQL- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l ++++++ + + +++l + ++
CP000304_0 239 ----------NEDLGLLQSQVQLCKESLRQLVRAAEADRR 268

CP000304_3086: domain 1 of 2, from 412 to 462: score 28.3, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE+++PL aI+ +a+ +++ ls+e
CP000304_3 412 SVGSLAAGMAHEINNPLGAILHNAQNIRR----------RLSAEL-- 446

peLRledpeyreyletilreaerllr<-*
++ e +++ + rl++
CP000304_3 447 ----------ERNREAAEETGVRLEA 462


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 1 0|=
-14 10 0|=
-13 32 3|*==
-12 134 94|======*===
-11 320 489|======================= *
-10 600 907|=========================================== *
-9 794 937|========================================================= *
-8 738 701|==================================================*==
-7 590 442|===============================*===========
-6 334 254|==================*=====
-5 225 139|=========*=======
-4 121 74|=====*===
-3 63 39|==*==
-2 49 20|=*==
-1 26 10|*=
0 12 5|*
1 7 2|*
2 3 1|*
3 6 0|=
4 3 0|=
5 1 0|=
6 2 0|=
> 7 57 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 439.3784
P(chi-square) = 0

Total sequences searched: 4128

Whole sequence top hits:
tophits_s report:
Total hits: 54
Satisfying E cutoff: 54
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 54
Satisfying E cutoff: 54
Total memory: 42K


Acknowledgements:

This research is funded by:

Developed by: