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Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Polaromonas sp. JS666  

Data for CP000316  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000316.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000316_3827 CDS_4091078-4094089 142.1 7.7e-40 2
CP000316_2216 CDS_2344495-2345850 93.7 3.8e-26 1
CP000316_0556 CDS_566067-562684 87.0 3.2e-24 1
CP000316_4074 CDS_4360669-4363428 86.2 5.1e-24 1
CP000316_2420 CDS_2577392-2580541 84.2 1.9e-23 1
CP000316_2344 CDS_2485882-2484026 82.3 6.4e-23 1
CP000316_1335 CDS_1390190-1393783 81.2 1.3e-22 1
CP000316_4383 CDS_4718924-4716405 79.8 3.3e-22 1
CP000316_0210 CDS_230725-233586 78.8 6.6e-22 1
CP000316_4735 CDS_5110298-5112697 76.7 2.6e-21 1
CP000316_0537 CDS_541905-543368 73.8 1.7e-20 1
CP000316_4179 CDS_4482646-4481102 68.6 5e-19 1
CP000316_1781 CDS_1879792-1878092 65.7 3.2e-18 1
CP000316_1777 CDS_1872431-1873531 64.2 8.6e-18 1
CP000316_3609 CDS_3885745-3887145 62.4 2.8e-17 1
CP000316_0234 CDS_260319-258922 62.3 3.1e-17 1
CP000316_4604 CDS_4975519-4976982 61.0 7.2e-17 1
CP000316_1096 CDS_1147261-1145546 59.9 1.5e-16 1
CP000316_1104 CDS_1157168-1155747 58.0 5e-16 1
CP000316_4122 CDS_4416222-4411534 56.0 1.9e-15 1
CP000316_4354 CDS_4683873-4681576 55.5 2.6e-15 1
CP000316_4201 CDS_4509129-4506790 55.2 3.1e-15 1
CP000316_1970 CDS_2078615-2077227 52.1 2.3e-14 1
CP000316_1710 CDS_1801756-1799183 49.6 1.2e-13 1
CP000316_2937 CDS_3144972-3148733 49.1 1.7e-13 1
CP000316_3452 CDS_3713145-3714299 48.3 2.9e-13 1
CP000316_0149 CDS_158058-162122 48.2 3e-13 1
CP000316_4547 CDS_4913058-4911673 47.7 4.2e-13 1
CP000316_3241 CDS_3490039-3492183 47.7 4.3e-13 1
CP000316_4120 CDS_4410478-4408913 47.5 4.8e-13 1
CP000316_4734 CDS_5109006-5110301 47.0 6.6e-13 1
CP000316_2663 CDS_2859355-2860734 45.2 2.2e-12 1
CP000316_3451 CDS_3711583-3713148 44.1 4.5e-12 1
CP000316_0152 CDS_163950-166487 41.6 2.3e-11 1
CP000316_1432 CDS_1501388-1502710 40.9 3.7e-11 1
CP000316_0205 CDS_225907-224585 39.2 1.1e-10 2
CP000316_0226 CDS_250115-248490 37.3 3.8e-10 1
CP000316_3907 CDS_4174689-4173061 36.0 8.9e-10 1
CP000316_0986 CDS_1014571-1016031 35.0 1.7e-09 1
CP000316_2622 CDS_2811571-2814192 32.5 8.7e-09 1
CP000316_4026 CDS_4308105-4309559 28.6 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000316_2216 1/1 217 283 .. 1 87 [] 93.7 3.8e-26
CP000316_0556 1/1 674 740 .. 1 87 [] 87.0 3.2e-24
CP000316_4074 1/1 685 752 .. 1 87 [] 86.2 5.1e-24
CP000316_2420 1/1 528 593 .. 1 87 [] 84.2 1.9e-23
CP000316_2344 1/1 232 299 .. 1 87 [] 82.3 6.4e-23
CP000316_1335 1/1 731 797 .. 1 87 [] 81.2 1.3e-22
CP000316_4383 1/1 471 539 .. 1 87 [] 79.8 3.3e-22
CP000316_0210 1/1 468 536 .. 1 87 [] 78.8 6.6e-22
CP000316_4735 1/1 308 376 .. 1 87 [] 76.7 2.6e-21
CP000316_3827 1/2 370 436 .. 1 87 [] 75.1 7.4e-21
CP000316_0537 1/1 268 336 .. 1 87 [] 73.8 1.7e-20
CP000316_4179 1/1 273 341 .. 1 87 [] 68.6 5e-19
CP000316_3827 2/2 777 845 .. 1 87 [] 67.0 1.4e-18
CP000316_1781 1/1 346 414 .. 1 87 [] 65.7 3.2e-18
CP000316_1777 1/1 143 207 .. 1 87 [] 64.2 8.6e-18
CP000316_3609 1/1 228 294 .. 1 87 [] 62.4 2.8e-17
CP000316_0234 1/1 254 319 .. 1 87 [] 62.3 3.1e-17
CP000316_4604 1/1 251 316 .. 1 87 [] 61.0 7.2e-17
CP000316_1096 1/1 335 400 .. 1 87 [] 59.9 1.5e-16
CP000316_1104 1/1 248 316 .. 1 87 [] 58.0 5e-16
CP000316_4122 1/1 1337 1405 .. 1 87 [] 56.0 1.9e-15
CP000316_4354 1/1 539 611 .. 1 87 [] 55.5 2.6e-15
CP000316_4201 1/1 553 621 .. 1 87 [] 55.2 3.1e-15
CP000316_1970 1/1 244 307 .. 1 87 [] 52.1 2.3e-14
CP000316_1710 1/1 629 697 .. 1 87 [] 49.6 1.2e-13
CP000316_2937 1/1 1033 1101 .. 1 87 [] 49.1 1.7e-13
CP000316_3452 1/1 160 228 .. 1 87 [] 48.3 2.9e-13
CP000316_0149 1/1 1127 1199 .. 1 87 [] 48.2 3e-13
CP000316_4547 1/1 237 302 .. 1 87 [] 47.7 4.2e-13
CP000316_3241 1/1 491 559 .. 1 87 [] 47.7 4.3e-13
CP000316_4120 1/1 295 363 .. 1 87 [] 47.5 4.8e-13
CP000316_4734 1/1 190 258 .. 1 87 [] 47.0 6.6e-13
CP000316_2663 1/1 248 307 .. 1 87 [] 45.2 2.2e-12
CP000316_3451 1/1 287 355 .. 1 87 [] 44.1 4.5e-12
CP000316_0152 1/1 622 687 .. 1 87 [] 41.6 2.3e-11
CP000316_1432 1/1 224 289 .. 1 87 [] 40.9 3.7e-11
CP000316_0226 1/1 321 389 .. 1 87 [] 37.3 3.8e-10
CP000316_3907 1/1 280 352 .. 1 87 [] 36.0 8.9e-10
CP000316_0986 1/1 244 307 .. 1 87 [] 35.0 1.7e-09
CP000316_2622 1/1 621 691 .. 1 87 [] 32.5 8.7e-09
CP000316_4026 1/1 260 322 .. 1 79 [. 28.6 1.1e-07

Alignments of top-scoring domains:
CP000316_2216: domain 1 of 1, from 217 to 283: score 93.7, E = 3.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHE+RTPLt+++g++e+L++ +l e++r
CP000316_2 217 MRRDFVANVSHEIRTPLTVLSGFIETLRT---------LPLEEPER- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl + ++++r++ L+ndlL+lsr+e
CP000316_2 254 ----------ARYLALMAQQSQRMQTLVNDLLTLSRLEGS 283

CP000316_0556: domain 1 of 1, from 674 to 740: score 87.0, E = 3.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++ +a++ HELRTPL++I+gy+++Ll+ +++l
CP000316_0 674 AKTRYVAGMTHELRTPLNSILGYSQILLK--------SEALANTP-- 710

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++ti+r++e+ll+L++ lLdl+rieag
CP000316_0 711 ----------REAVQTIQRSGEHLLALVDGLLDLARIEAG 740

CP000316_4074: domain 1 of 1, from 685 to 752: score 86.2, E = 5.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++++ HELRTPLt+Ir+++e+Lle + +s +r
CP000316_4 685 MKDDFMSTVTHELRTPLTSIRALSEILLE--------TPQASLAER- 722

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i +eaerl rLin++Ld+++ie+g
CP000316_4 723 ----------QKFLGIIVKEAERLTRLINQVLDMAKIESG 752

CP000316_2420: domain 1 of 1, from 528 to 593: score 84.2, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++++ g++elL tel+ +q
CP000316_2 528 AKSTFLATMSHEIRTPMNGMFGMLELLGL---------TELDTDQ-- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l ++++++++ll +i+d+Ld+s+ieag
CP000316_2 564 ----------RATLAIVRESSQSLLCIIDDILDFSKIEAG 593

CP000316_2344: domain 1 of 1, from 232 to 299: score 82.3, E = 6.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl+++sHELRTPL+aI+g+a+l++ g + ++ q
CP000316_2 232 AKSDFLSSMSHELRTPLSAILGFAQLIES-------GTPQPTPSQ-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ il+++ +ll+Lin++Ldl+ ie+g
CP000316_2 270 ----------KRSVDQILQAGWYLLELINEILDLALIESG 299

CP000316_1335: domain 1 of 1, from 731 to 797: score 81.2, E = 1.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ ++++sHELRTPL++I+gya+l+ e d++ ++
CP000316_1 731 AKSRYISAISHELRTPLNSILGYAQLMGE--------DAAIPPHR-- 767

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r +e+ll+Li+ Ld++rieag
CP000316_1 768 ----------KQAVSVIRRGGEHLLSLIEGTLDIARIEAG 797

CP000316_4383: domain 1 of 1, from 471 to 539: score 79.8, E = 3.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef++++sHELRTPLt+Irg + l ++ +el+e+
CP000316_4 471 MKSEFVSTVSHELRTPLTSIRGSLGLVWGGVT------GELPEKA-- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ erl rLind+Ld ++ie+g
CP000316_4 510 ----------KALVGIAKNNCERLIRLINDILDSEKIESG 539

CP000316_0210: domain 1 of 1, from 468 to 536: score 78.8, E = 6.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef++++sHELRTPLt+Irg + l+ ++ +el+e
CP000316_0 468 MKTEFVSTVSHELRTPLTSIRGSLGLISGGVA------GELPEAV-- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ + erl rLind+Ld ++ie+g
CP000316_0 507 ----------KSLVAIATSNCERLIRLINDMLDSEKIESG 536

CP000316_4735: domain 1 of 1, from 308 to 376: score 76.7, E = 2.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef++++sHELRTPLt+Irg + l+ ++ +el++
CP000316_4 308 MKSEFVSTVSHELRTPLTSIRGSLGLIAGGVA------GELPAMA-- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ + erl rLind+Ld ++ie+g
CP000316_4 347 ----------KSLVGIASNNCERLIRLINDILDSEKIESG 376

CP000316_3827: domain 1 of 2, from 370 to 436: score 75.1, E = 7.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt ++g +e+Ll+ + el++e
CP000316_3 370 AKTAFFSNVSHEFRTPLTLLLGPLETLLA--------ERELGAEA-- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l ++r a rllrL+n lLd+sr+eag
CP000316_3 407 ----------RDRLLQMQRNALRLLRLVNALLDFSRMEAG 436

CP000316_0537: domain 1 of 1, from 268 to 336: score 73.8, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sH+LRTPLt++ gy+e+Ll ++ ++l++ +r
CP000316_0 268 QRRELFANISHDLRTPLTSLHGYLETLLIKA-------DALDPGER- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yle++l +++ rL ++l +l+r+e g
CP000316_0 307 ----------RRYLEIALAQSRKVARLAQELFELARLEYG 336

CP000316_4179: domain 1 of 1, from 273 to 341: score 68.6, E = 5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s fla++sH+LRTPL+aI+g+a+ L++ +++ l+ +++
CP000316_4 273 LQSTFLAAVSHDLRTPLAAIMGAASSLQT-------QRDRLPLPDQ- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i +ea +l++ ++ L++ r+ +
CP000316_4 312 ----------DRLLDSIVNEASYLSEVTENTLQFVRLSSS 341

CP000316_3827: domain 2 of 2, from 777 to 845: score 67.0, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL a+ gy++lL+e++ t l++e
CP000316_3 777 ELEAFSYSVSHDLRAPLRAVNGYTHLLEEGYA------TQLDDEG-- 815

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+++++ea r+ +Li+dlL lsri
CP000316_3 816 ----------RRFLRVVREEAGRMGQLIDDLLNLSRIARA 845

CP000316_1781: domain 1 of 1, from 346 to 414: score 65.7, E = 3.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++++ H+LR PL+ I gya lL++++ + l+e+
CP000316_1 346 SLESFTSAATHDLRSPLSIIGGYAGLLEKNYA------SRLDEKG-- 384

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i++ ++ + +Li+dlL +s++++
CP000316_1 385 ----------QRYVSIIRDNIKGMAKLIDDLLAFSKLGQR 414

CP000316_1777: domain 1 of 1, from 143 to 207: score 64.2, E = 8.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL++ e + e
CP000316_1 143 ANKELIRNLAHEIKNPLGGIRGAAQLLQM----------EIDKEL-- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i++ea+rl+ L+++lL r +
CP000316_1 178 ----------TEYTQVIIHEADRLQTLVDRLLAPHRRPHL 207

CP000316_3609: domain 1 of 1, from 228 to 294: score 62.4, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ f+a+++HELR PLta+++ a++L++ ++ ++ +r
CP000316_3 228 AQKNFVADAAHELRSPLTALKLQAQALRR---------GDDDPAER- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ + ++r rL+++lL l+r e g
CP000316_3 265 ----------EAGIARLNQGIDRAIRLVEQLLVLAREEGG 294

CP000316_0234: domain 1 of 1, from 254 to 319: score 62.3, E = 3.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++l HEL+ PL+aIrg+ elL++ el+e r
CP000316_0 254 YIEGYVRALTHELKSPLAAIRGAGELLQD----------ELPENAR- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +l+++ rl++L++++L+l+++e+
CP000316_0 290 ----------REFAGQVLDQSARLQALVDRMLELTKLEQR 319

CP000316_4604: domain 1 of 1, from 251 to 316: score 61.0, E = 7.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla+++H+L+TPL+++r+ a+l+++ ++ ++e
CP000316_4 251 TQKRFLADAAHQLKTPLAGLRMQADLAQR---------ETDTDEL-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i r++ r + +n+lL l+r+e+
CP000316_4 287 ----------KKSLKHIGRASIRATHTVNQLLALARAETT 316

CP000316_1096: domain 1 of 1, from 335 to 400: score 59.9, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+R+PL+aI+ + lL+e +l + +
CP000316_1 335 AMGRMSAAVAHEIRNPLAAISQANALLEE----------DLQDAGH- 370

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ + + a+rl ++++++L +sr++++
CP000316_1 371 ----------RQLTALVSQNAQRLAKIVDEVLNISRAQEQ 400

CP000316_1104: domain 1 of 1, from 248 to 316: score 58.0, E = 5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl+++sHEL+TPL+++r ++lL++++ ++ls++q
CP000316_1 248 DKSRFLRHISHELKTPLASLREGVSLLEDGVA------GPLSDDQ-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +++++ + l+ +i+dlL + + +
CP000316_1 287 ----------REIAQILKHNTGVLQGQIEDLLRFNTAAFE 316

CP000316_4122: domain 1 of 1, from 1337 to 1405: score 56.0, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL++I g++ lL ++l ++ +e+
CP000316_4 1337 ELEAFSYSVSHDLRSPLNTIDGFSRLLSKQL------PGHVNEKS-- 1375

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl +i+ + ++ +Li+dlL l++
CP000316_4 1376 ----------RHYLARIQTGVAQMGQLIEDLLSLAQVSRA 1405

CP000316_4354: domain 1 of 1, from 539 to 611: score 55.5, E = 2.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l ++ +e +++
CP000316_4 539 AWGEVARRLAHEIKNPLTPIQLSAERLEMKLT------GKVGETEQA 579

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti ++++ + rL+n+++d++r+ a
CP000316_4 580 LL--------TKSVKTIVDQVDAMKRLVNEFRDYARLPAA 611

CP000316_4201: domain 1 of 1, from 553 to 621: score 55.2, E = 3.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LR PL++I g+++lL + a+ ++ s++
CP000316_4 553 EMESFAYSVSHDLRSPLNTIHGFSQLLAK------AEAENISDKG-- 591

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl++i ++ + +Li+ lL+l+++ +
CP000316_4 592 ----------KHYLDRIGVGVKEMGELIEGLLTLAQLSRE 621

CP000316_1970: domain 1 of 1, from 244 to 307: score 52.1, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++++H+LRTPL++++ ++ +l+ +++++
CP000316_1 244 HQKRFVRDAAHQLRTPLAVLKVQVQSALR---------GDMDA---- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ i + ++r L n++L l++ e+
CP000316_1 278 ----------REALDEINQTVDRATLLANQMLALAKVEQL 307

CP000316_1710: domain 1 of 1, from 629 to 697: score 49.6, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+L PL +I g++ lL ++l ++ ls e+
CP000316_1 629 ELESFGYSVSHDLQSPLRSIEGFSVLLARRL------RGRLSHEE-- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++ + r+ +LindlL l+r g
CP000316_1 668 ----------QRLFDRVKANVVRMHELINDLLALARVSKG 697

CP000316_2937: domain 1 of 1, from 1033 to 1101: score 49.1, E = 1.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PLt++ g++ lL +el + + +++
CP000316_2 1033 ELEAFSYSVSHDLRSPLTTVDGFSRLLAKEL-------KDNPGKKL- 1071

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl +i++ + ++ +Li+ lL l+
CP000316_2 1072 ----------QHYLTRIQSGVGQMGQLIEALLSLAHVARL 1101

CP000316_3452: domain 1 of 1, from 160 to 228: score 48.3, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++H LR PL a+ gy++lLl+++ ++l+e+
CP000316_3 160 EIEGLVHAVAHHLRSPLRAMEGYSHLLLTRYA------ANLPEPA-- 198

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i +a+r+ rL++dlL + ++++
CP000316_3 199 ----------SRFPEVIAGSARRMARLVDDLLSFVNLRQQ 228

CP000316_0149: domain 1 of 1, from 1127 to 1199: score 48.2, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+++ f ++sH+LRTPL+aI g+++lL + l k+ ++ +++s
CP000316_0 1127 QLESFSYSVSHDLRTPLSAIDGFSDLLDKALAKTvSGPQADRS---- 1169

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++i+ + ++ +Li+ +L l++
CP000316_0 1170 -----------RHYLSRIRAGVSQMGELIDAMLSLAQVSRA 1199

CP000316_4547: domain 1 of 1, from 237 to 302: score 47.7, E = 4.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++++ ++HELRTPL++I + a L++ +l+++ +
CP000316_4 237 RERQLASEIAHELRTPLSSIALQAASLRK----------PLTAQAH- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ i +a r + i +lL l+r+
CP000316_4 273 ----------EEALQQISADAMRAGHVITQLLALARASRA 302

CP000316_3241: domain 1 of 1, from 491 to 559: score 47.7, E = 4.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f a++sH+LR PL++I g+a lL++ + ++ls+
CP000316_3 491 DLEAFSASVSHDLRSPLHTIGGFATLLER------SEASALSDSG-- 529

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +i+ a ++r+i+d+L sr+e
CP000316_3 530 ----------RHKLARIIAGAATMDRMIQDILACSRAERV 559

CP000316_4120: domain 1 of 1, from 295 to 363: score 47.5, E = 4.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
f++++sH+L PL+a+ g+a++L +++ +t+l++
CP000316_4 295 DVAAFTRAVSHDLQGPLHAVNGFAKVLAKNY------STALDASG-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++i+ +++++ +L++dl++l ++ +
CP000316_4 334 ----------LHYVSRIQASTRQMAKLVDDLRTLVQLPEL 363

CP000316_4734: domain 1 of 1, from 190 to 258: score 47.0, E = 6.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LRTPL+ + +++ lL +eld +++se
CP000316_4 190 ELEAFAYAVSHDLRTPLSIMNAFSNLLARELD------GHASETV-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl++i+ +a ++Li+ lL l+++
CP000316_4 229 ----------LHYLSRIQASAVVGSQLIEALLSLAQASRV 258

CP000316_2663: domain 1 of 1, from 248 to 307: score 45.2, E = 2.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ ++
CP000316_2 248 DRVIMLAGISHDLRTPLARLRLETEMSVAD----------------- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + ++ +l+++i+ +Ld++r e
CP000316_2 278 ----------KDARDHMAADITQLDAIIDKFLDYARPEPA 307

CP000316_3451: domain 1 of 1, from 287 to 355: score 44.1, E = 4.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LR PL aI g++elL + +++ l++
CP000316_3 287 ELEAFATAVSHDLRGPLQAIAGFSELLAR------SQRERLDASG-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++++ +a ++ +++d L + + +
CP000316_3 326 ----------QLFLDRVHASALQMGCMVEDYLGFLKSNRE 355

CP000316_0152: domain 1 of 1, from 622 to 687: score 41.6, E = 2.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ +++H+LR+P+ aI g++ lL++ ++
CP000316_0 622 DLQEFAHSVAHDLRQPIIAIGGFSGLLER---------MVTDPHG-- 657

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl +i+ +++ +L + lL l+ +
CP000316_0 658 ----------KHYLARIKAGVQQAGELTEALLALANLSRV 687

CP000316_1432: domain 1 of 1, from 224 to 289: score 40.9, E = 3.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LRTPLt +r+ ++ l+ ++ ++
CP000316_1 224 ERRGFIDDASHQLRTPLTILRAQLDYVLR---------EPDPARR-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ + +e+ r n+lL+l+r +a
CP000316_1 260 ----------QLALQALSEELGNAIRATNQLLTLARSDAA 289

CP000316_0226: domain 1 of 1, from 321 to 389: score 37.3, E = 3.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f +l+H+LR+P aI g+a+lL++e+ ++l++
CP000316_0 321 ELQAFSHSLAHDLRQPYIAINGLASLLEREMA------AHLTARG-- 359

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i+ + ++++ + lL l+++ +
CP000316_0 360 ----------KDYLNRIRAGVSQMNDRTDSLLSLAQLSQA 389

CP000316_3907: domain 1 of 1, from 280 to 352: score 36.0, E = 8.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+LRTPL+++++ +e+ a +++ + +l
CP000316_3 280 GQRRFVADAAHQLRTPLAGLQAQVEAWAQ------AARAKGADGAIL 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +++++++r ++L n+lL lsr++a
CP000316_3 321 LS--------ADKIIKLRSATRRTSQLANQLLALSRADAS 352

CP000316_0986: domain 1 of 1, from 244 to 307: score 35.0, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a+++H+LR+P++a+ +ya+ L + e+q
CP000316_0 244 IKNRFIASAAHDLRQPVHALGLYADWLAA-------------EPQ-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +i r+++ ++L n l dl+ +++
CP000316_0 276 --------FVSQIAPKIVRSTRAVEDLFNSLFDLAGLDSD 307

CP000316_2622: domain 1 of 1, from 621 to 691: score 32.5, E = 8.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PLtaI y+ + + g + +e+
CP000316_2 621 TMGEMASSVAHELNQPLTAINNYCNGMVSRI----KGQQISNEDL-- 661

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++ r+a+r ++i++++ + + ++
CP000316_2 662 ----------LIALDKTARQAHRAGQIIQRIRSFVKRSEP 691

CP000316_4026: domain 1 of 1, from 260 to 322: score 28.6, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HEL++PLta++++++++ + + +++++
CP000316_4 260 TLGELAAGMAHELNQPLTAVLANTQAAGR--------LLNDEPPELA 298

peLRledpeyreyletilreaerllrLindlL<-*
+ r + + ++a+r ++ + +l+
CP000316_4 299 SA--------RAAMAQAVEQARRASEVVGRLR 322


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 7 0|=
-13 50 3|*==
-12 198 110|======*=====
-11 466 571|============================ *
-10 807 1059|================================================ *
-9 952 1093|======================================================== *
-8 852 819|================================================*==
-7 623 516|==============================*======
-6 371 297|=================*====
-5 201 162|=========*==
-4 113 87|=====*=
-3 55 46|==*=
-2 36 24|=*=
-1 21 12|*=
0 14 6|*
1 3 3|*
2 2 1|*
> 3 46 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 247.7474
P(chi-square) = 0

Total sequences searched: 4817

Whole sequence top hits:
tophits_s report:
Total hits: 41
Satisfying E cutoff: 41
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 41
Satisfying E cutoff: 41
Total memory: 37K


Acknowledgements:

This research is funded by:

Developed by: