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Classification of phyla is from NCBI page
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132 projects found  

4 accessions found for Nitrobacter hamburgensis X14  

Data for CP000319  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000319.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000319_0128 CDS_147517-145259 93.8 2.9e-26 1
CP000319_1369 CDS_1639342-1637015 90.7 2.1e-25 1
CP000319_2503 CDS_2883686-2881842 83.4 2.6e-23 1
CP000319_1389 CDS_1669983-1668373 80.9 1.3e-22 1
CP000319_1174 CDS_1411220-1408125 77.8 9.8e-22 1
CP000319_0620 CDS_695595-696947 75.2 5.3e-21 1
CP000319_0052 CDS_58867-61383 73.5 1.6e-20 1
CP000319_0430 CDS_487626-485803 69.5 2.2e-19 1
CP000319_2846 CDS_3296429-3293745 61.2 5.1e-17 1
CP000319_0945 CDS_1109469-1108156 57.4 5.8e-16 1
CP000319_0272 CDS_304776-301267 55.0 2.8e-15 1
CP000319_3126 CDS_3633488-3634786 54.7 3.6e-15 1
CP000319_1748 CDS_2044429-2045604 53.9 5.7e-15 1
CP000319_0233 CDS_261698-258873 48.4 2.1e-13 1
CP000319_1750 CDS_2047249-2049543 46.2 9e-13 1
CP000319_1367 CDS_1632455-1633915 42.8 8.3e-12 1
CP000319_1813 CDS_2123392-2121908 42.5 9.7e-12 1
CP000319_3312 CDS_3835541-3834285 42.1 1.3e-11 1
CP000319_3510 CDS_4055150-4053408 40.4 4e-11 1
CP000319_3127 CDS_3636164-3634767 39.7 6.2e-11 1
CP000319_3315 CDS_3837406-3838932 39.1 9.3e-11 1
CP000319_0343 CDS_381121-383289 36.8 3.9e-10 1
CP000319_0228 CDS_254849-256243 36.7 4.4e-10 1
CP000319_1318 CDS_1582068-1584629 36.2 6.1e-10 1
CP000319_2970 CDS_3459789-3458356 34.6 1.7e-09 1
CP000319_0846 CDS_974885-976792 31.9 1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000319_0128 1/1 232 297 .. 1 87 [] 93.8 2.9e-26
CP000319_1369 1/1 538 607 .. 1 87 [] 90.7 2.1e-25
CP000319_2503 1/1 349 418 .. 1 87 [] 83.4 2.6e-23
CP000319_1389 1/1 263 332 .. 1 87 [] 80.9 1.3e-22
CP000319_1174 1/1 799 868 .. 1 87 [] 77.8 9.8e-22
CP000319_0620 1/1 213 280 .. 1 87 [] 75.2 5.3e-21
CP000319_0052 1/1 606 674 .. 1 87 [] 73.5 1.6e-20
CP000319_0430 1/1 371 436 .. 1 87 [] 69.5 2.2e-19
CP000319_2846 1/1 663 731 .. 1 87 [] 61.2 5.1e-17
CP000319_0945 1/1 217 282 .. 1 87 [] 57.4 5.8e-16
CP000319_0272 1/1 800 865 .. 1 87 [] 55.0 2.8e-15
CP000319_3126 1/1 214 279 .. 1 87 [] 54.7 3.6e-15
CP000319_1748 1/1 139 194 .. 1 78 [. 53.9 5.7e-15
CP000319_0233 1/1 571 639 .. 1 87 [] 48.4 2.1e-13
CP000319_1750 1/1 504 575 .. 1 87 [] 46.2 9e-13
CP000319_1367 1/1 237 303 .. 1 87 [] 42.8 8.3e-12
CP000319_1813 1/1 264 335 .. 1 87 [] 42.5 9.7e-12
CP000319_3312 1/1 44 109 .. 1 87 [] 42.1 1.3e-11
CP000319_3510 1/1 353 422 .. 1 87 [] 40.4 4e-11
CP000319_3127 1/1 244 302 .. 1 87 [] 39.7 6.2e-11
CP000319_3315 1/1 157 223 .. 1 87 [] 39.1 9.3e-11
CP000319_0343 1/1 348 413 .. 1 87 [] 36.8 3.9e-10
CP000319_0228 1/1 227 298 .. 1 87 [] 36.7 4.4e-10
CP000319_1318 1/1 468 534 .. 1 87 [] 36.2 6.1e-10
CP000319_2970 1/1 273 332 .. 1 87 [] 34.6 1.7e-09
CP000319_0846 1/1 407 477 .. 1 87 [] 31.9 1e-08

Alignments of top-scoring domains:
CP000319_0128: domain 1 of 1, from 232 to 297: score 93.8, E = 2.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla+ sHE+RTPL++I+g++ lLl+ t l++eq
CP000319_0 232 AKSRFLAMTSHEIRTPLNGIIGMSGLLLD---------TSLTPEQ-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ ++ +++ ll+Li++lLd+srieag
CP000319_0 268 ----------TTYVKAVKASGDALLSLIEELLDYSRIEAG 297

CP000319_1369: domain 1 of 1, from 538 to 607: score 90.7, E = 2.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPL+aI+g++e++ ++++ ++l++e+
CP000319_1 538 AKSKFLANMSHELRTPLNAIIGFSEIMSNGMF------GTLGSEK-- 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + il ++++ll+ ind+Ld+s+ieag
CP000319_1 577 ---------YSEYCHDILTSGQYLLEVINDVLDMSKIEAG 607

CP000319_2503: domain 1 of 1, from 349 to 418: score 83.4, E = 2.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHELRTPL+aI+g++e++ l++ r
CP000319_2 349 AKTRFLATMSHELRTPLNAIIGFSEMMVQ------EDALSLDAARR- 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey + i +++++ll+ +n +Ld+s++e+g
CP000319_2 389 ----------KEYAQLINDSGQHLLSVVNSILDISKMESG 418

CP000319_1389: domain 1 of 1, from 263 to 332: score 80.9, E = 1.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTPL+aI+g++e+++ + +e ++
CP000319_1 263 AKSRFLAQMSHELRTPLNAILGFSEVMKS---------EIFGEHAVA 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + y i++++ +ll+Lin++Ldlsrieag
CP000319_1 301 VY--------KSYSADIHNSGVHLLNLINEILDLSRIEAG 332

CP000319_1174: domain 1 of 1, from 799 to 868: score 77.8, E = 9.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak + la +sHE+RTPL+aI+g+ae++ + + ++l+ e
CP000319_1 799 AKADVLARISHEIRTPLNAIIGFAEVMTD------EKFGALGNER-- 837

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i+ ++er+ + i+dlLdlsrie+g
CP000319_1 838 ---------YVEYMKDIRASGERIIAFIDDLLDLSRIETG 868

CP000319_0620: domain 1 of 1, from 213 to 280: score 75.2, E = 5.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++++L+ +++++ ++
CP000319_0 213 MRADFVANASHELRTPLAALSGFIDTLQG---------PARDDAGAR 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +++ +a r+ rLi+dlL lsr e
CP000319_0 251 ----------DRFLGIMHAQATRMARLIDDLLSLSRVELS 280

CP000319_0052: domain 1 of 1, from 606 to 674: score 73.5, E = 1.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+ ++s ELR PLt+I+g+a+l+ + +g ++l+e+q
CP000319_0 606 MKVDFVHHVSYELRSPLTTIIGFAHLMND------PGTGPLTEKQ-- 644

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ i ++++ ll+L n++Ldl+ i+ag
CP000319_0 645 ----------AQYIDYITSSTDALLALTNNILDLATIDAG 674

CP000319_0430: domain 1 of 1, from 371 to 436: score 69.5, E = 2.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L +++e r
CP000319_0 371 AIETFAADVSHELKNPLTSLRSAVETLPL----------AKTEASR- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+i+++++rl+rLi+d+ d sr++a+
CP000319_0 407 ----------ARLLEVIEHDVRRLDRLISDISDASRLDAE 436

CP000319_2846: domain 1 of 1, from 663 to 731: score 61.2, E = 5.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH++RTPL++I+g+a Ll ++ ++ ++ +
CP000319_2 663 VRNTLLASVSHDFRTPLSSILGAATSLLSYG-------DKIGAAAK- 701

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l i++e+e l++++++lL ++ri++g
CP000319_2 702 ----------TDLLGQIKQETEGLDEMVRNLLAITRIDSG 731

CP000319_0945: domain 1 of 1, from 217 to 282: score 57.4, E = 5.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++HELRTP+ta+ ae L ++ls +
CP000319_0 217 KQRRFVADAAHELRTPITALVVQAENLDH---------ANLSQDG-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l++++ ++r +L+++lL l+r ++g
CP000319_0 253 ----------RERLSSLKTGIRRTGHLLEQLLALARYDNG 282

CP000319_0272: domain 1 of 1, from 800 to 865: score 55.0, E = 2.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++ H++ +PL+a r+y+ L e + e+
CP000319_0 800 SKTRFLAAAGHDILQPLNAARLYVTSLVE---------RRSGGED-- 835

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i++++e +++++ lLd+sr++ag
CP000319_0 836 ----------SRLVQNIDDSLEAIEEILGALLDISRLDAG 865

CP000319_3126: domain 1 of 1, from 214 to 279: score 54.7, E = 3.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++HELRTPL+a++ a+ Ll+ ++ls++
CP000319_3 214 AQRRFVADAAHELRTPLAALQIQADNLLA---------SDLSDQS-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + + + ++r + L ++lL+++r e
CP000319_3 250 ----------REMANELGEGVRRSSYLASQLLEMARTEGA 279

CP000319_1748: domain 1 of 1, from 139 to 194: score 53.9, E = 5.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+l+HE+++PL++Irg+a+lL+ +s+e+
CP000319_1 139 SVTALAAMLAHEIKNPLSGIRGAAQLLEQ----------GASSED-- 173

peLRledpeyreyletilreaerllrLindl<-*
r +++ i +ea+r+ L++++
CP000319_1 174 ----------RMLTRLICDEADRIVTLVDRM 194

CP000319_0233: domain 1 of 1, from 571 to 639: score 48.4, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g ++l++++l+ + +++
CP000319_0 571 AVGQLTGGIAHDFNNLLTGIVGSLDLMQTRLN------QGRTDRA-- 609

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e + +a+r +L +lL ++r +
CP000319_0 610 ----------GRYIEAAMASANRAAALTHRLLAFARRQPL 639

CP000319_1750: domain 1 of 1, from 504 to 575: score 46.2, E = 9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ g ++ +
CP000319_1 504 AWGDVARRIAHEIKNPLTPIQLSAERIRRKF-----GKVIIEDKPI- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ti r++e ++r+++++ ++r+ +
CP000319_1 545 ---------FEQCTDTIVRQVEDIRRMVDEFSRFARMPKP 575

CP000319_1367: domain 1 of 1, from 237 to 303: score 42.8, E = 8.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e n++H+L+TPLt +r ae +l+ +e +
CP000319_1 237 GLKEVSDNIAHDLKTPLTRLRNRAEQALA---------KSGNESD-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le ++e++ l r n lL ++r+e+g
CP000319_1 273 ---------YRAALEQTIEESDGLIRTFNALLMIARAESG 303

CP000319_1813: domain 1 of 1, from 264 to 335: score 42.5, E = 9.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PLtaI+ y + ++ +la +t+ + ++
CP000319_1 264 AMGEMASALAHELNQPLTAISNYMKGSRR----LLAASTDPNIAKI- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++ ++a r ++i++l+d+ ++
CP000319_1 306 ----------ETALDRAADQAIRAGQIIRRLRDFVSRRES 335

CP000319_3312: domain 1 of 1, from 44 to 109: score 42.1, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ la+ +HE RTPLt+I++ ++lL + ++l+e +
CP000319_3 44 IVEAALAAFAHEVRTPLTGILAISDLLAT---------SDLGERE-- 79

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +eti+ a++l +L + d +r ++
CP000319_3 80 ----------RRWVETIKAGADHLASLATLFVDAARSRQS 109

CP000319_3510: domain 1 of 1, from 353 to 422: score 40.4, E = 4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e l +++H+L++PL +I+g +e+L e ++ t+ + +++
CP000319_3 353 FKNEILGTVAHDLKNPLGVIMGRTEMLSE------LIGTDSPRDTV- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+++++rl +++ l + ++a
CP000319_3 393 ----------TSQVDHIRDATRRLITMVDHLISDAMADAF 422

CP000319_3127: domain 1 of 1, from 244 to 302: score 39.7, E = 6.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef a+++HELRTPL+ +r+ +e+L
CP000319_3 244 SQREFSADAAHELRTPLAILRTRIETLPH------------------ 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + + r++e ++r + +lLd + +e+
CP000319_3 273 ----------SEASRALGRDVENMSRVVGQLLDATELETA 302

CP000319_3315: domain 1 of 1, from 157 to 223: score 39.1, E = 9.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L ++g++++L++ +++ +
CP000319_3 157 ALGQLTGGVAHDFNNLLMIVSGNIQTLKT---------IVENDPRA- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i+ +++r +L ++lL++sr ++
CP000319_3 194 ----------MRAVHAIETATQRGAALTRQLLTFSRRQSV 223

CP000319_0343: domain 1 of 1, from 348 to 413: score 36.8, E = 3.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L I+g ++ L++ el++++
CP000319_0 348 AIGQLTGGVAHDFNNLLMIISGSVQRLRR----------ELTDKKS- 383

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ i +++r + L + lL++sr ++
CP000319_0 384 ----------LRLLDMIGTATHRGETLTRHLLTYSRRQTL 413

CP000319_0228: domain 1 of 1, from 227 to 298: score 36.7, E = 4.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HEL TPL++I + + L++ ++++ ++++qrl
CP000319_0 227 QIDGLAAAAAHELGTPLSTIFLISRELEK-----ALQENGAPDPQRL 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +++++a+r+++++ + +ls +a+
CP000319_0 269 ----------AGDLGVVREQAQRCRDILAKIAQLSSSGAP 298

CP000319_1318: domain 1 of 1, from 468 to 534: score 36.2, E = 6.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L+aI+++ + Ll+ ++ +++
CP000319_1 468 SVGQLAGGIAHDFNNVLSAIMMANDFLLN--------AHKPTDPS-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a+r +L+++lL +sr ++
CP000319_1 505 ----------FQDIMQIKQNANRAAALVRQLLAFSRRQTL 534

CP000319_2970: domain 1 of 1, from 273 to 332: score 34.6, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRT Lt ++ + l+ ++++
CP000319_2 273 QRTAMLAGVSHDLRTILTRFKLELALIGG------------DSPE-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++++ + +++ L ++r ++g
CP000319_2 306 -------------VDGMRKDVDEMHGMLEAYLAFARGDSG 332

CP000319_0846: domain 1 of 1, from 407 to 477: score 31.9, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ +++HEL++PL +I++++e+++ ++++ + +++
CP000319_0 407 AVGELTTSIAHELNQPLGSILTNTETAEI-----MLKSSSPNLDEM- 447

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l i+r+ +r ++ i++l+ +
CP000319_0 448 ----------KEILADIRRDDQRASEVIRRLRSVLKKTPF 477


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 9 0|=
-13 61 2|*====
-12 178 86|======*=======
-11 415 450|================================ *
-10 638 836|================================================== *
-9 718 863|======================================================== *
-8 672 646|=================================================*==
-7 444 407|===============================*===
-6 301 234|=================*======
-5 160 128|=========*===
-4 76 68|=====*
-3 45 36|==*=
-2 22 19|=*
-1 17 9|*=
0 2 5|*
1 3 2|*
2 5 1|*
3 2 0|=
4 1 0|=
5 0 0|
6 2 0|=
7 0 0|
8 1 0|=
9 1 0|=
10 1 0|=
11 0 0|
> 12 30 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 208.8012
P(chi-square) = 2.093e-308

Total sequences searched: 3804

Whole sequence top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: