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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Psychrobacter cryohalolentis K5  

Data for CP000323  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000323.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000323_1944 CDS_2408938-2407127 97.3 1.9e-27 1
CP000323_0380 CDS_463364-466873 94.3 1.3e-26 1
CP000323_2208 CDS_2720911-2719841 69.0 2e-19 1
CP000323_2317 CDS_2854743-2853058 60.5 5.1e-17 1
CP000323_1240 CDS_1514930-1513614 54.5 2.6e-15 1
CP000323_0656 CDS_778073-779929 53.2 6e-15 1
CP000323_1221 CDS_1483631-1485322 52.9 7.1e-15 1
CP000323_2097 CDS_2577498-2579600 51.5 1.8e-14 1
CP000323_0702 CDS_832470-833957 49.0 9e-14 1
CP000323_2316 CDS_2850955-2852526 44.7 1.5e-12 1
CP000323_0675 CDS_803800-802070 44.5 1.8e-12 1
CP000323_1709 CDS_2124004-2125392 42.8 5.2e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000323_1944 1/1 189 254 .. 1 87 [] 97.3 1.9e-27
CP000323_0380 1/1 309 375 .. 1 87 [] 94.3 1.3e-26
CP000323_2208 1/1 127 193 .. 1 87 [] 69.0 2e-19
CP000323_2317 1/1 320 385 .. 1 87 [] 60.5 5.1e-17
CP000323_1240 1/1 221 287 .. 1 87 [] 54.5 2.6e-15
CP000323_0656 1/1 257 322 .. 1 87 [] 53.2 6e-15
CP000323_1221 1/1 329 392 .. 1 87 [] 52.9 7.1e-15
CP000323_2097 1/1 243 314 .. 1 87 [] 51.5 1.8e-14
CP000323_0702 1/1 251 317 .. 1 87 [] 49.0 9e-14
CP000323_2316 1/1 273 331 .. 1 87 [] 44.7 1.5e-12
CP000323_0675 1/1 337 423 .. 1 87 [] 44.5 1.8e-12
CP000323_1709 1/1 157 256 .. 1 87 [] 42.8 5.2e-12

Alignments of top-scoring domains:
CP000323_1944: domain 1 of 1, from 189 to 254: score 97.3, E = 1.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHE+RTP+++I+g++e+L + t ls eq
CP000323_1 189 MKSAFLANMSHEIRTPMNGIIGMVEMLSD---------TMLSVEQ-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+e i+ + e+ll++in +Ldls+ eag
CP000323_1 225 ----------REYIENIKVSNEHLLAIINGILDLSKVEAG 254

CP000323_0380: domain 1 of 1, from 309 to 375: score 94.3, E = 1.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I g++ lL + +el++eq
CP000323_0 309 AKSAFLANISHELRTPLNSIDGFINLLAR--------HGELNPEQ-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ti++++ +ll+L+nd+Ld+s+ieag
CP000323_0 346 ----------DLYVQTIRKSSAHLLALVNDVLDFSKIEAG 375

CP000323_2208: domain 1 of 1, from 127 to 193: score 69.0, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+++gy+e + +++++
CP000323_2 127 MRRDFVANVSHELRTPLTVLMGYLENFSD--------QPDMPA---- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++r+ +e + +++ r++r +ndlL lsrie +
CP000323_2 162 --------NWRRGFELMTQQTARMNRVVNDLLLLSRIEIE 193

CP000323_2317: domain 1 of 1, from 320 to 385: score 60.5, E = 5.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+++++sHELRTP++ Ir+++++L + + +e+ r
CP000323_2 320 SQRELTRAVSHELRTPVARIRFAVDMLAD----------TDDEDSR- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++++e l+ Li+++L+++++e+g
CP000323_2 356 ----------FMQRDFIDEDIEALNGLIDEILTYAKLEEG 385

CP000323_1240: domain 1 of 1, from 221 to 287: score 54.5, E = 2.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTPLt I+g++e+L l e rl
CP000323_1 221 REQLFTGDVSHELRTPLTIIMGASEVLAS----------QLEENSRL 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++i a+ +++i+ lL lsr+ ++
CP000323_1 258 ----------SEFANRISTTAKETSEIISALLLLSRAPEQ 287

CP000323_0656: domain 1 of 1, from 257 to 322: score 53.2, E = 6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f +++ HEL+T L+aI g ++lL + ++l+ eq
CP000323_0 257 QLHNFQSMITHELKTSLNAIVGGLQLLDD---------EKLNHEQ-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++++i++ ++ l ++++ +l +i+ g
CP000323_0 293 ----------RDAVDIIREGSDKLVLTLDQIIQLNQIQKG 322

CP000323_1221: domain 1 of 1, from 329 to 392: score 52.9, E = 7.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ ++l+++sHELR PL+ + ++el ++
CP000323_1 329 ARKQMLSDISHELRSPLARLDVATELTRD------------------ 357

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ p+ +yl++i++e+ r+++Li+++ + ++ +
CP000323_1 358 -----FAPNASRYLDRIDKESTRMNELIEQIIRIQSLQMQ 392

CP000323_2097: domain 1 of 1, from 243 to 314: score 51.5, E = 1.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +la++sHELRTP+t Ir+ +e++ + ++l+++ ++
CP000323_2 243 ANNLLLAHASHELRTPITRIRLQIEMMDMLT-------GPLPSDNKA 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i r++ l++L++ +L sr++ag
CP000323_2 283 KF--------DKRAQAINRDLSGLNDLVESILLVSRLDAG 314

CP000323_0702: domain 1 of 1, from 251 to 317: score 49.0, E = 9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f n++HELRTPL+++ + ++++l ++ + +
CP000323_0 251 SLSRFSDNIAHELRTPLATLGTQTQVMLS---------KPRASHE-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l+ ++ +e+l+ Lin++L l++ + g
CP000323_0 287 ---------YVEQLHHQHDTLEQLSTLINNMLLLAKTQKG 317

CP000323_2316: domain 1 of 1, from 273 to 331: score 44.7, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r++ae+L +
CP000323_2 273 ERTIMLAGISHDLRTPLTRMRLTAEMLPD------------------ 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e ++ ++e ++++++++ + + ++
CP000323_2 302 ----------DFFREGLIYDIEDMDAILEQFISFMKDGSD 331

CP000323_0675: domain 1 of 1, from 337 to 423: score 44.5, E = 1.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE+R+PL+aI+ +++lL e++ +++e++ + +
CP000323_0 337 SLGQLTASIAHEIRNPLAAISQASQLLIEDV-----IESEMDNDNA- 377

peLRl..........edpeyreyletilreaerllrLindlLdlsrieag
l++ +++ ++ + +e+ + i ++++r +r+i+d+L lsr ++
CP000323_0 378 ----LspfanndinsQMTGNHELYKMIFSQTKRVNRIIEDVLKLSRQQTA 423

<-*

CP000323_0 - -

CP000323_1709: domain 1 of 1, from 157 to 256: score 42.8, E = 5.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldk..............
+ +l++++HE+++PL++Irg+a+lL++++ k ++++ ++++++++
CP000323_1 157 VARHMLRSVAHEIKNPLAGIRGAAQLLQRQFIKfsersfnthttdtd 203

.........v.lagdtelseeqrlpeLRledpeyreyletilreaerllr
++ +++++++ ++++++ r y+++i++e++rl +
CP000323_1 204 ypslissptLnSDNHLQKTADKL-----------RSYTDIIISETDRLTQ 242

LindlLdlsrieag<-*
Li ++L ++ +
CP000323_1 243 LIGQFLGSNQLPHW 256


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 7 0|=
-13 14 1|*=
-12 105 56|======*=====
-11 208 292|======================== *
-10 473 542|===================================================== *
-9 465 560|==================================================== *
-8 435 419|==============================================*==
-7 289 264|=============================*===
-6 228 152|================*=========
-5 102 83|=========*==
-4 50 44|====*=
-3 37 23|==*==
-2 21 12|=*=
-1 5 6|*
0 6 3|*
1 2 1|*
2 2 0|=
3 0 0|
4 0 0|
5 1 0|=
> 6 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 150.8270
P(chi-square) = 1.01e-26

Total sequences searched: 2467

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: