Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

2 accessions found for Leptospira borgpetersenii serovar Hardjo-bovis L550  

Data for CP000348  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000348.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000348_2067 CDS_2738136-2739962 40.2 1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000348_2067 1/1 420 479 .. 1 70 [] 40.2 1e-11

Alignments of top-scoring domains:
CP000348_2067: domain 1 of 1, from 420 to 479: score 40.2, E = 1e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERaRIA ++HDs+g L+ai le + + +l+ +
CP000348_2 420 ERARIASDIHDSIGSELTAILFELESKD----------KNDSTLKKL 456

relarealaevRrllgdLRpaal<-*
+ +++ ++ vR+++ +++++
CP000348_2 457 KSEVNHLISNVRDIVFLMHHQGN 479


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 14 0|==
-13 88 0|=========
-12 114 30|==*=========
-11 190 247|=================== *
-10 550 574|======================================================= *
-9 585 652|==========================================================*
-8 407 503|========================================= *
-7 318 316|===============================*
-6 180 179|=================*
-5 131 96|=========*====
-4 66 50|====*==
-3 23 25|==*
-2 20 13|=*
-1 4 6|*
0 6 3|*
1 3 1|*
2 1 0|=
3 1 0|=
4 0 0|
5 0 0|
> 6 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 294.1953
P(chi-square) = 0

Total sequences searched: 2703

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: