Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

2 accessions found for Leptospira borgpetersenii serovar Hardjo-bovis L550  

Data for CP000349  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000349.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000349_0218 CDS_288669-286354 65.9 1.4e-19 1
CP000349_0013 CDS_13786-14691 33.9 1.7e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000349_0218 1/1 542 610 .. 1 87 [] 65.9 1.4e-19
CP000349_0013 1/1 93 158 .. 1 87 [] 33.9 1.7e-10

Alignments of top-scoring domains:
CP000349_0218: domain 1 of 1, from 542 to 610: score 65.9, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak ef++n+sHELR P+t I+gy elL++e + t ls +q
CP000349_0 542 AKHEFISNISHELRSPMTNIQGYFELLRAEIN------TFLSKDQ-- 580

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i++ ++rl++Li++lL ++ + +
CP000349_0 581 ----------SGMLNVIEKNIKRLNHLIENLLKFEEVQGE 610

CP000349_0013: domain 1 of 1, from 93 to 158: score 33.9, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+f++++ HE++TPL+++r+ ae L+ee+ + l+e ++
CP000349_0 93 LIHDFFSTVTHEMKTPLASLRLQAESLQEEM-------PSLNENKL- 131

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l ++ r++++ n+ + l+ +
CP000349_0 132 -------------IHRLLMDSVRIESQMNRAMYLASLTKS 158


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 2 0|==
-12 13 5|====*========
-11 26 28|========================== *
-10 41 53|========================================= *
-9 42 54|========================================== *
-8 44 41|========================================*===
-7 34 25|========================*=========
-6 18 14|=============*====
-5 12 8|=======*====
-4 6 4|===*==
-3 1 2|=*
-2 0 1|*
> -1 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 21.3146
P(chi-square) = 0.003331

Total sequences searched: 242

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: