Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

2 accessions found for Sphingopyxis alaskensis RB2256  

Data for CP000356  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000356.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000356_1113 CDS_1162056-1160608 85.3 6.1e-24 1
CP000356_0160 CDS_163562-161199 70.0 1.4e-19 1
CP000356_2031 CDS_2158776-2160281 61.7 3e-17 1
CP000356_1262 CDS_1332366-1330045 56.8 7.2e-16 1
CP000356_1264 CDS_1334926-1333835 54.3 3.7e-15 1
CP000356_0753 CDS_767085-768377 48.6 1.5e-13 1
CP000356_1714 CDS_1818410-1816029 47.8 2.6e-13 1
CP000356_2155 CDS_2281255-2283231 43.5 4.4e-12 1
CP000356_1444 CDS_1510112-1511968 38.3 1.3e-10 1
CP000356_2440 CDS_2600851-2602395 38.0 1.6e-10 1
CP000356_1275 CDS_1346292-1344670 34.4 1.7e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000356_1113 1/1 254 322 .. 1 87 [] 85.3 6.1e-24
CP000356_0160 1/1 565 633 .. 1 87 [] 70.0 1.4e-19
CP000356_2031 1/1 267 332 .. 1 87 [] 61.7 3e-17
CP000356_1262 1/1 512 583 .. 1 87 [] 56.8 7.2e-16
CP000356_1264 1/1 132 196 .. 1 87 [] 54.3 3.7e-15
CP000356_0753 1/1 223 281 .. 1 87 [] 48.6 1.5e-13
CP000356_1714 1/1 414 480 .. 1 87 [] 47.8 2.6e-13
CP000356_2155 1/1 284 351 .. 1 87 [] 43.5 4.4e-12
CP000356_1444 1/1 402 470 .. 1 87 [] 38.3 1.3e-10
CP000356_2440 1/1 285 356 .. 1 87 [] 38.0 1.6e-10
CP000356_1275 1/1 311 369 .. 11 87 .] 34.4 1.7e-09

Alignments of top-scoring domains:
CP000356_1113: domain 1 of 1, from 254 to 322: score 85.3, E = 6.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+aI+gy+e+L++ ++ +e + +r
CP000356_1 254 MRSDFVANASHELRTPLAAIIGYVETLQD-MN------GEDDGATR- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+rea+r+++L+ dlL +sr ea
CP000356_1 293 ----------RRFLSIIEREARRMQQLVIDLLSISRVEAD 322

CP000356_0160: domain 1 of 1, from 565 to 633: score 70.0, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl+ +s ELRTPLt+I g+ e+L++++ ++l+++q
CP000356_0 565 AKTAFLSRMSYELRTPLTSIGGFGEMLQAGYA------GKLGDQQ-- 603

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ i +++ l r+i+++Ldl++ eag
CP000356_0 604 ----------RAYVDAIMDSVAVLGRQIDNVLDLAQGEAG 633

CP000356_2031: domain 1 of 1, from 267 to 332: score 61.7, E = 3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++ HEL++P++++r ++e L + +s+eqr
CP000356_2 267 AGEHFAADVTHELKNPIASVRSAIEGLGR----------VQSDEQR- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++++++rl+rL++d+ + sr +a+
CP000356_2 303 ----------AQLLAIADEDVRRLDRLVSDISEASRVDAQ 332

CP000356_1262: domain 1 of 1, from 512 to 583: score 56.8, E = 7.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ ++ ++HE+++PLt I+++ae L++++ + + e ++++
CP000356_1 512 AWSDVARRIAHEIKNPLTPIQLAAERLQRRF----GDRVEGDAPT-- 552

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r++++t++r+++ ++r+++++ ++r+ +
CP000356_1 553 ---------FRKLTDTVIRQVHDMRRMVDEFSSFARMPKP 583

CP000356_1264: domain 1 of 1, from 132 to 196: score 54.3, E = 3.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++l+HE+++PL++I+g+a+lL + + ++
CP000356_1 132 AAGAAASMLAHEIKNPLAGIKGAAQLLAR----------KTGAGG-- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i e++r+ Li+++ +sr +
CP000356_1 167 ----------ERFTTLICAEVDRIATLIDQMEHFSRGQPI 196

CP000356_0753: domain 1 of 1, from 223 to 281: score 48.6, E = 1.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+++l ++ H+LRTPL+++r +e ++
CP000356_0 223 DKDRMLGAVGHDLRTPLASLRVRVEQVED------------------ 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++ +++ + +++ d+L l+r +ag
CP000356_0 252 ----------DRLRDKMIASIDEMTAMLTDILALARSGAG 281

CP000356_1714: domain 1 of 1, from 414 to 480: score 47.8, E = 2.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lta++g+++l+l+ +++ ++ +
CP000356_1 414 AVGQLAGGVAHDFNNILTAVLGACDLMLM--------RHTPGDSD-- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++ a+r +L ++lL +sr ++
CP000356_1 451 ----------YDDIQQIRSNANRAASLTRQLLAFSRQQTL 480

CP000356_2155: domain 1 of 1, from 284 to 351: score 43.5, E = 4.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L+++ g +el++++l + ++e+
CP000356_2 284 AVGQLTGGIAHDFNNMLAVVVGGLELAERWL-------PGQPEKA-- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +l+ a+r +L ++lL+++r+e
CP000356_2 322 ----------QRHLANALDGANRAADLTRRLLTFARAEPA 351

CP000356_1444: domain 1 of 1, from 402 to 470: score 38.3, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +a+++HE+++P++aIr +ae +l++l + +++
CP000356_1 402 SIGQITAGVAHEINQPVAAIRSFAENALAYL-------GRSEGDKA- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ i + r ++ +l+ ++r +
CP000356_1 441 ----------RANLDHIVALTARVGAITGELRNFARRATA 470

CP000356_2440: domain 1 of 1, from 285 to 356: score 38.0, E = 1.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++++l+HEL++PLtaI y+e+ ++ +d g+++ + + +
CP000356_2 285 AMGTMASTLAHELNQPLTAIANYLETTRDLVD----GEGDIPRDIL- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l + +e+ r ++++l+d+ ++
CP000356_2 327 ----------HEALTEAANETLRAGYIVRRLRDFVARGEV 356

CP000356_1275: domain 1 of 1, from 311 to 369: score 34.4, E = 1.7e-09
*->HELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRledpey
HELR PL+aI+g+a+++ +++ ++ s
CP000356_1 311 HELRSPLNAISGFAQIISGQMF------GPVSQSY------------ 339

reyletilreaerllrLindlLdlsrieag<-*
r + eti +a + +++i+dl + +r ++
CP000356_1 340 RAMAETIVADAASVQSIIDDLETAARRGHA 369


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 1 0|=
-13 26 2|*==
-12 118 72|=====*====
-11 313 375|=========================== *
-10 484 696|========================================= *
-9 665 718|======================================================== *
-8 580 538|============================================*====
-7 407 339|============================*=====
-6 276 195|================*======
-5 130 107|========*==
-4 72 57|====*=
-3 30 30|==*
-2 21 15|=*
-1 13 8|*=
0 4 4|*
1 4 2|*
2 3 1|*
3 1 0|=
> 4 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 171.0271
P(chi-square) = 7.251e-31

Total sequences searched: 3165

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: