Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

3 accessions found for Deinococcus geothermalis DSM 11300  

Data for CP000358  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000358.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000358_0160 CDS_180567-179206 65.0 5.8e-19 1
CP000358_0475 CDS_521734-519557 57.9 5.9e-17 1
CP000358_0435 CDS_489272-488169 57.9 6e-17 1
CP000358_0403 CDS_457369-458433 57.6 7e-17 1
CP000358_0251 CDS_276780-275482 40.8 4e-12 1
CP000358_0158 CDS_176965-178506 30.9 2.6e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000358_0160 1/1 234 298 .. 1 87 [] 65.0 5.8e-19
CP000358_0475 1/1 508 574 .. 1 87 [] 57.9 5.9e-17
CP000358_0435 1/1 141 204 .. 1 87 [] 57.9 6e-17
CP000358_0403 1/1 145 208 .. 1 87 [] 57.6 7e-17
CP000358_0251 1/1 221 287 .. 1 87 [] 40.8 4e-12
CP000358_0158 1/1 290 358 .. 1 87 [] 30.9 2.6e-09

Alignments of top-scoring domains:
CP000358_0160: domain 1 of 1, from 234 to 298: score 65.0, E = 5.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++H+L+TPL++I g++e +l+ ++ + ++
CP000358_0 234 ARRQLTADIAHDLNTPLSVIAGTLEGILD---------GTFQPTPQR 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+++re+++ +L+ndl+ l+ ++ag
CP000358_0 272 -------------LERLYRETRHVAQLVNDLRFLALADAG 298

CP000358_0475: domain 1 of 1, from 508 to 574: score 57.9, E = 5.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f++++sH+LR P+ I +a lL+ ++e+ +
CP000358_0 508 DLEAFASSVSHDLRAPVRHIASFAGLLRP---------LIADEPRA- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl++i+++a r++ Li+ +L+lsr+++g
CP000358_0 545 ----------RRYLDIIEQSAGRMNTLIESMLTLSRLGSG 574

CP000358_0435: domain 1 of 1, from 141 to 204: score 57.9, E = 6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an++HELRTP++a+rgy+e+L + + +++ +
CP000358_0 141 ERTELIANVAHELRTPIAALRGYTEALAD---------GVMDPVAA- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++re+ l+rL +dl s+ e g
CP000358_0 178 -------------REALQREVSALERLARDLSLVSQVERG 204

CP000358_0403: domain 1 of 1, from 145 to 208: score 57.6, E = 7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e++ n++HELR PL+a+rgya+++++ + +++e++
CP000358_0 145 GRVELIGNVAHELRAPLAALRGYADAMQD---------GVMTPEHA- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i re+ ++rL++dl sr eag
CP000358_0 182 -------------AQSISREIGAMDRLVRDLSLVSRVEAG 208

CP000358_0251: domain 1 of 1, from 221 to 287: score 40.8, E = 4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
f+++++HELRTPLt++ g +elLl+ ++++
CP000358_0 221 HEKSFARMAAHELRTPLTTLAGRVELLLD---------RPRDAAA-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr l +++ +e l++L + lL l+r +a+
CP000358_0 257 ---------YRAGLVQLQERIEALRALSEGLLSLARTDAP 287

CP000358_0158: domain 1 of 1, from 290 to 358: score 30.9, E = 2.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ + sH+LRTPL a ++ +++l++++ ++l+e
CP000358_0 290 LLRDLIYAFSHDLRTPLLANAMNMQAALKGAY------GPLPEAY-- 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l l++ e ll+L ++lL +r e+g
CP000358_0 329 ----------RATLVNGLSANETLLNLADQLLLVARYESG 358


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 3 0|==
-13 6 0|===
-12 11 11|=====*
-11 39 61|==================== *
-10 66 114|================================= *
-9 109 118|======================================================= *
-8 98 88|===========================================*=====
-7 67 55|===========================*======
-6 47 32|===============*========
-5 22 17|========*==
-4 16 9|====*===
-3 16 4|=*======
-2 8 2|*===
-1 5 1|*==
0 1 0|=
> 1 8 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 45.6112
P(chi-square) = 2.818e-07

Total sequences searched: 522

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: