hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000358.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000358_0513 CDS_562781-564019 78.7 8.8e-24 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000358_0513 1/1 211 279 .. 1 70 [] 78.7 8.8e-24
Alignments of top-scoring domains:
CP000358_0513: domain 1 of 1, from 211 to 279: score 78.7, E = 8.8e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+ARELHD++g++L+ i++qle+ +rll +k+p++ar+ +++
CP000358_0 211 ERTRLARELHDTLGHALTTITVQLEAGERLL--EKNPQKARTLFERS 255
relarealaevRrllgdLR.paal<-*
r+l+r a ae+R+ lg+LR+
CP000358_0 256 RDLSRSATAELRASLGELRrGEMG 279
Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 2 0|=
-12 8 5|==*=
-11 11 47|====== *
-10 56 111|============================ *
-9 80 126|======================================== *
-8 68 97|================================== *
-7 70 61|==============================*====
-6 65 34|================*================
-5 57 18|========*====================
-4 46 9|====*==================
-3 15 4|=*======
-2 19 2|*=========
-1 11 1|*=====
0 5 0|===
1 3 0|==
2 3 0|==
> 3 3 -|==
% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 326.2515
P(chi-square) = 0
Total sequences searched: 522
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
