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Classification of phyla is from NCBI page
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32 projects found  

1 accessions found for Arcobacter butzleri RM4018  

Data for CP000361  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000361.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000361_0774 CDS_802655-804952 87.0 1.4e-24 1
CP000361_0423 CDS_435036-433660 63.3 7.4e-18 1
CP000361_0093 CDS_102232-103617 57.6 3e-16 1
CP000361_1263 CDS_1290381-1289353 50.4 3.4e-14 1
CP000361_0364 CDS_376540-375263 44.4 1.7e-12 1
CP000361_1084 CDS_1109363-1110550 39.9 3.2e-11 1
CP000361_2030 CDS_2099431-2098208 39.5 4.1e-11 1
CP000361_0410 CDS_422071-424494 34.9 8.4e-10 1
CP000361_0773 CDS_802589-801525 34.5 1.1e-09 1
CP000361_0061 CDS_71440-72591 33.4 2.1e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000361_0774 1/1 319 385 .. 1 87 [] 87.0 1.4e-24
CP000361_0423 1/1 236 302 .. 1 87 [] 63.3 7.4e-18
CP000361_0093 1/1 252 319 .. 1 87 [] 57.6 3e-16
CP000361_1263 1/1 119 186 .. 1 87 [] 50.4 3.4e-14
CP000361_0364 1/1 204 270 .. 1 87 [] 44.4 1.7e-12
CP000361_1084 1/1 187 251 .. 1 87 [] 39.9 3.2e-11
CP000361_2030 1/1 210 268 .. 1 87 [] 39.5 4.1e-11
CP000361_0410 1/1 569 641 .. 1 87 [] 34.9 8.4e-10
CP000361_0773 1/1 137 199 .. 1 87 [] 34.5 1.1e-09
CP000361_0061 1/1 182 240 .. 1 87 [] 33.4 2.1e-09

Alignments of top-scoring domains:
CP000361_0774: domain 1 of 1, from 319 to 385: score 87.0, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla +sHELRTPL+aI+g+a +L++ + +++ ++
CP000361_0 319 AKSIFLARMSHELRTPLNAILGFANILKK--------SMNATNQE-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i++++e+ll++in++L+ls+ieag
CP000361_0 356 ----------KENLNIIKKSGEHLLNIINEILELSKIEAG 385

CP000361_0423: domain 1 of 1, from 236 to 302: score 63.3, E = 7.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +++sHEL+TPLt I+g e+ l+ +++ +
CP000361_0 236 RMSQFSSDASHELKTPLTIIKGEMEVTLR---------KDRTINE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e+l+t l+e+ +++ indlL l++ e++
CP000361_0 272 ---------YKEALKTSLEEISGIEQTINDLLFLAKNEQE 302

CP000361_0093: domain 1 of 1, from 252 to 319: score 57.6, E = 3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e ++++sHE+++P++ I+gy+e++l+ d +++e +
CP000361_0 252 QKDEIISAISHEFKNPIAIISGYSETILN--------DKDMPEAMK- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i++ a+ ++++i+ l+ ++e+g
CP000361_0 290 ----------SKFLNKIYSNANKMSHIIDKLRLTLKLEEG 319

CP000361_1263: domain 1 of 1, from 119 to 186: score 50.4, E = 3.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ +l +sH+LRTPL++I g++ l+l + ++l+++ +
CP000361_1 119 LKESLLHIISHDLRTPLSTIHGTINLILSN--------DKLDSKSL- 156

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i ++ ++ rLi +lLd +r+ +
CP000361_1 157 ----------YPLLEDINYASISMKRLITNLLDSTRLSNK 186

CP000361_0364: domain 1 of 1, from 204 to 270: score 44.4, E = 1.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k e++ +++HEL+TPL+++++ e+Ll+ ++ +q
CP000361_0 204 FKKELFIGIAHELKTPLAVMKLKNEVLLK---------KKREIQQ-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e+l+ ++e++ ++ +i+ +Ld+ r e
CP000361_0 240 ---------YEEALKLTIKEIDDMNIMISSILDIGRTEGA 270

CP000361_1084: domain 1 of 1, from 187 to 251: score 39.9, E = 3.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ + HEL+TP+taI++++e++ + + l++++
CP000361_1 187 LLDRFIKDTTHELNTPVTAIITNIETIDK---------SLLDDKT-- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+ a+ ++++ +d L++ + ++
CP000361_1 223 ----------LRKINRIEIGAKTISNIYED-LTFVTLNNQ 251

CP000361_2030: domain 1 of 1, from 210 to 268: score 39.5, E = 4.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++n+ HEL+TP+t ++ ae+L++
CP000361_2 210 SKDLFMRNMMHELKTPITKAMFIAETLED------------------ 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e ++r+ +r++++i +l + +++ +
CP000361_2 239 ----------DKTRENLQRAFKRMDDIIKELATVEKLTSK 268

CP000361_0410: domain 1 of 1, from 569 to 641: score 34.9, E = 8.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++ HE++TPLt I+g++e++ + ++l++ ++
CP000361_0 569 YIGSLAAGITHEINTPLTYIKGNLEMMSYDI-------SDLPDGDIK 608

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e++++ ++r+ ++++ ++++++ +
CP000361_0 609 DRM-------LFDSEKMKEGINRIANIVESMREMAQSSKE 641

CP000361_0773: domain 1 of 1, from 137 to 199: score 34.5, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl + HE++TPL+ I ++++ L+ t e+
CP000361_0 137 QQDFFLKKIIHEMNTPLSIINLNIDNLES---------TLGHKEE-- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eti+ ++++l+++ ndl ls+
CP000361_0 173 -------------FETIKASSKSLSSIYNDLYYLSKKKKR 199

CP000361_0061: domain 1 of 1, from 182 to 240: score 33.4, E = 2.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ + HEL+TP++aI++ +e ++ls++q
CP000361_0 182 KLNNFIKDTTHELNTPISAIMMSSEN------------ENLSSKQ-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i+ +a+rl+++ d L++ +e+
CP000361_0 215 -------------IERIRYSANRLSEIYKD-LTYIFLENI 240


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 4 0|=
-13 27 1|*===
-12 104 51|======*======
-11 258 267|=================================*
-10 400 496|================================================== *
-9 414 513|==================================================== *
-8 375 384|===============================================*
-7 234 242|==============================*
-6 181 139|=================*=====
-5 87 76|=========*=
-4 70 40|====*====
-3 36 21|==*==
-2 16 11|=*
-1 11 5|*=
0 9 3|*=
1 0 1|*
2 1 0|=
3 0 0|
4 1 0|=
5 1 0|=
6 2 0|=
7 2 0|=
8 0 0|
9 1 0|=
10 2 0|=
11 1 0|=
12 0 0|
13 2 0|=
14 1 0|=
15 1 0|=
16 1 0|=
17 0 0|
18 1 0|=
19 1 0|=
> 20 14 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 142.4402
P(chi-square) = 5.191e-25

Total sequences searched: 2259

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: