hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000361.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000361_1138 CDS_1169171-1171018 107.9 8.9e-31 1
CP000361_0701 CDS_730720-728867 93.1 1.5e-26 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000361_1138 1/1 429 514 .. 1 94 [] 107.9 8.9e-31
CP000361_0701 1/1 423 508 .. 1 94 [] 93.1 1.5e-26
Alignments of top-scoring domains:
CP000361_1138: domain 1 of 1, from 429 to 514: score 107.9, E = 8.9e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRVKNN+Q+I SL+rLQ++ ++de+ +++L +qnR+ +
CP000361_1 429 ELNHRVKNNMQTIVSLIRLQSDEIEDEKL-----KDILLTTQNRIGA 470
mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
m +HE LY e++ +++ eY+e L+++ ++sy ++s++i+L+ +
CP000361_1 471 MGHLHELLYNQENINFINVYEYFETLVDEVKSSY-DESINIHLD--I 514
CP000361_0701: domain 1 of 1, from 423 to 508: score 93.1, E = 1.5e-26
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNL++ +SL+ LQ + ++de++ +++L + q R+ +
CP000361_0 423 EIHHRVKNNLALTISLIELQEEEIEDEKT-----KKVLVDIQERIYT 464
mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
m l+H++LY+s +l ++ f++Y L++ + ++y +++++++++ +
CP000361_0 465 MELLHRKLYESTNLNKIPFKSYTLDLIKTISKTY-DKDEKVKIE--T 508
Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 3 0|=
-13 20 14|=*=
-12 68 148|======== *
-11 411 413|=============================================*
-10 374 534|========================================== *
-9 499 451|==================================================*=====
-8 340 302|=================================*====
-7 209 179|===================*====
-6 187 100|===========*=========
-5 61 53|=====*=
-4 35 28|===*
-3 26 14|=*=
-2 8 7|*
-1 11 4|*=
0 1 2|*
1 1 1|*
2 1 0|=
3 1 0|=
4 0 0|
5 0 0|
> 6 3 -|=
% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 194.0563
P(chi-square) = 1.27e-35
Total sequences searched: 2259
Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K
