Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

5 accessions found for Roseobacter denitrificans OCh 114  

Data for CP000362  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000362.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000362_0336 CDS_350567-352768 92.4 7.3e-26 1
CP000362_2457 CDS_2521030-2522073 82.9 3.7e-23 1
CP000362_3344 CDS_3461763-3458416 78.9 4.9e-22 1
CP000362_2633 CDS_2710979-2708295 77.0 1.7e-21 1
CP000362_3327 CDS_3439117-3436733 70.9 9.2e-20 1
CP000362_1070 CDS_1117958-1116267 70.0 1.7e-19 1
CP000362_1282 CDS_1324176-1325864 67.4 9.2e-19 1
CP000362_3410 CDS_3531921-3529753 64.4 6.4e-18 1
CP000362_2563 CDS_2638690-2637611 51.1 3.8e-14 1
CP000362_2561 CDS_2636132-2633874 48.1 2.6e-13 1
CP000362_2518 CDS_2583958-2581628 47.1 5.2e-13 1
CP000362_2102 CDS_2153976-2155301 43.5 5.2e-12 1
CP000362_2115 CDS_2164550-2166253 41.5 1.9e-11 1
CP000362_0812 CDS_857107-859299 41.5 1.9e-11 1
CP000362_1386 CDS_1415207-1417150 35.1 1.3e-09 1
CP000362_1363 CDS_1389304-1390710 31.7 1.2e-08 1
CP000362_2863 CDS_2957784-2960129 27.0 2.5e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000362_0336 1/1 196 261 .. 1 87 [] 92.4 7.3e-26
CP000362_2457 1/1 112 179 .. 1 87 [] 82.9 3.7e-23
CP000362_3344 1/1 663 729 .. 1 87 [] 78.9 4.9e-22
CP000362_2633 1/1 668 735 .. 1 87 [] 77.0 1.7e-21
CP000362_3327 1/1 324 389 .. 1 87 [] 70.9 9.2e-20
CP000362_1070 1/1 336 399 .. 1 87 [] 70.0 1.7e-19
CP000362_1282 1/1 333 398 .. 1 87 [] 67.4 9.2e-19
CP000362_3410 1/1 236 301 .. 1 87 [] 64.4 6.4e-18
CP000362_2563 1/1 127 191 .. 1 87 [] 51.1 3.8e-14
CP000362_2561 1/1 504 575 .. 1 87 [] 48.1 2.6e-13
CP000362_2518 1/1 405 471 .. 1 87 [] 47.1 5.2e-13
CP000362_2102 1/1 234 291 .. 1 87 [] 43.5 5.2e-12
CP000362_2115 1/1 341 409 .. 1 87 [] 41.5 1.9e-11
CP000362_0812 1/1 346 411 .. 1 87 [] 41.5 1.9e-11
CP000362_1386 1/1 417 485 .. 1 87 [] 35.1 1.3e-09
CP000362_1363 1/1 241 305 .. 1 87 [] 31.7 1.2e-08
CP000362_2863 1/1 549 619 .. 1 87 [] 27.0 2.5e-07

Alignments of top-scoring domains:
CP000362_0336: domain 1 of 1, from 196 to 261: score 92.4, E = 7.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++++ g+a++L e t+lseeq
CP000362_0 196 AKSAFLANMSHEIRTPMNGVVGMADVLTE---------TPLSEEQ-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ti++++e ll +ind+Ld+s+iea+
CP000362_0 232 ----------RLYVDTIKNSGEALLVIINDVLDYSKIEAE 261

CP000362_2457: domain 1 of 1, from 112 to 179: score 82.9, E = 3.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLta++g++e+L+ +++ + ++
CP000362_2 112 MRRDFVANVSHELRTPLTALMGFIETLRG---------PAREDAAAR 149

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++ ea r++rL+ dlL lsr e +
CP000362_2 150 ----------DRFLDIMEGEAGRMNRLVGDLLSLSRVEGN 179

CP000362_3344: domain 1 of 1, from 663 to 729: score 78.9, E = 4.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++ + +lsHELRTPL++I g+a++L++ d++ +
CP000362_3 663 AKTRYMTGLSHELRTPLNSIYGFAQILER--------DEDIPIRR-- 699

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ti+r++e+l Li+ lLd+srieag
CP000362_3 700 ----------RNSITTIRRSSEHLAGLIEGLLDISRIEAG 729

CP000362_2633: domain 1 of 1, from 668 to 735: score 77.0, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efl+ +sHELRTP+t+Ir ++e+L++ + + e+
CP000362_2 668 QKDEFLSQISHELRTPMTSIRSFSEILRD-------AKGIGPIEK-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ++i+ ea rl rL+ndlLdls +e+g
CP000362_2 706 ----------AKYANIIHVEAIRLTRLLNDLLDLSVLENG 735

CP000362_3327: domain 1 of 1, from 324 to 389: score 70.9, E = 9.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++l +sHE+RTPL++I+g + lL + + ++ q
CP000362_3 324 AKSDLLTVMSHEMRTPLNGILGSLALLDK---------ERFDDRQ-- 359

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i ++e ll+ +nd+Ldls +e
CP000362_3 360 ----------KRLLNSISVSGELLLSHVNDVLDLSSLEKD 389

CP000362_1070: domain 1 of 1, from 336 to 399: score 70.0, E = 1.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPLt+I++ a++ ++ s++
CP000362_1 336 KRRRFFADISHELRTPLTVILMEAQIGKT-----------GSPDP-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ti+ a rl+r i+dlL l+r ++g
CP000362_1 370 ----------AAAFATIEARAARLNRRIDDLLRLARSDTG 399

CP000362_1282: domain 1 of 1, from 333 to 398: score 67.4, E = 9.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HE+++PL+++r ++ +L++ ++ ++
CP000362_1 333 GNEQFAADVAHEIKNPLASLRSAVGTLRM---------VKREDQR-- 368

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rL++d+ d sr++++
CP000362_1 369 ----------EKLLDVIDHDVRRLDRLVSDISDASRLDSE 398

CP000362_3410: domain 1 of 1, from 236 to 301: score 64.4, E = 6.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla +sHE+RTPL++I+g+++lL++ +++++++
CP000362_3 236 SKTEFLARMSHEIRTPLNGIIGMLDLLQA----------DMTDPEA- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + t+l++a+ ll++ nd+L ++ e
CP000362_3 272 ----------KARTATALNSARDLLDITNDILNFAGGEDS 301

CP000362_2563: domain 1 of 1, from 127 to 191: score 51.1, E = 3.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +l+HE+++PL++I g+a+lL + +ls+e+
CP000362_2 127 SAIGMAEMLAHEIKNPLAGITGAAQLLSM----------NLSPED-- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ i +e++r+ +L++++ ++ + +
CP000362_2 162 ----------LELTDLIVEESRRIVKLLEQVEQFGNLSVP 191

CP000362_2561: domain 1 of 1, from 504 to 575: score 48.1, E = 2.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ +++ +e se
CP000362_2 504 AWGDVARRIAHEIKNPLTPIQLSAERIKRKF---SPRVGEDSEAL-- 545

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i r++ l+r+++++ ++r+ ++
CP000362_2 546 ----------EQMTDVIVRQTGDLRRIVDEFSKFARMPEP 575

CP000362_2518: domain 1 of 1, from 405 to 471: score 47.1, E = 5.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl ++++++++
CP000362_2 405 AIGQLAGGVAHDFNNLLTAISGHCDLLLL--------RHDQGDPD-- 441

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i + a+r +L+ +lL +sr ++
CP000362_2 442 ----------FSDLVQINQNANRAAALVGQLLAFSRKQTL 471

CP000362_2102: domain 1 of 1, from 234 to 291: score 43.5, E = 5.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRTPLt +r+ +++L++ +e +
CP000362_2 234 QRTLMLSGVSHDLRTPLTRMRLSLSMLED-------------AERI- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ ++++++ +L +++ e +
CP000362_2 267 ---------------PLEQDVNDMQEMLDAFLSFAKGEGE 291

CP000362_2115: domain 1 of 1, from 341 to 409: score 41.5, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a++sHEL++PL+a+++y+ ++ l + ++ ee
CP000362_2 341 ALGEMSAAVSHELNQPLAAMKTYLAGARLLL------RRNRHEEA-- 379

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i++ +er+ + ++l ++r +++
CP000362_2 380 ----------LSSFGRIDDLIERMGGITRQLKSYARKGQE 409

CP000362_0812: domain 1 of 1, from 346 to 411: score 41.5, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +P++a +++++ L+e t++
CP000362_0 346 SKTRFLAAASHDLLQPINAAKLLISSLQE---------TTRETRF-- 381

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+++ + + + L+ lLd+sr+e+
CP000362_0 382 ----------RPMVERLEGAFASAEYLLHSLLDISRLESA 411

CP000362_1386: domain 1 of 1, from 417 to 485: score 35.1, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++H+LR PL aI+ ++e le ++t ls++
CP000362_1 417 ELEKFAYVAAHDLRSPLRAIQDLTEWTLE------DEETVLSADG-- 455

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +++ + rl++L++dlL+++r++++
CP000362_1 456 ----------LENMTLLQKRTLRLNNLLSDLLEYARAGQE 485

CP000362_1363: domain 1 of 1, from 241 to 305: score 31.7, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +sH+LR+ Lt+ +++++ +++ ++
CP000362_1 241 QLGSAVSKISHDLRNILTSAQLFTDRIEM----------SEDPTV-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ ++ r +L + L + ++e++
CP000362_1 276 ----------KRMAPKLVGSITRAVHLCESTLAFGKAEEP 305

CP000362_2863: domain 1 of 1, from 549 to 619: score 27.0, E = 2.5e-07
*->akseflanlsHELRTPLtaIr....gyaelLleeldkvlagdtelse
++++++ +l+HEL++PL aI+++ ++++ lL++ + + +
CP000362_2 549 MMGQMATGLAHELNQPLLAISqnmdTAVFLLKD---------AGQEA 586

eqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+l +r a+r ++i l+ + + e
CP000362_2 587 GEL-----------QELLLETDRHAHRAGDIIKALRAFVKKEGA 619


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 22 0|==
-13 83 2|*======
-12 178 90|======*=======
-11 409 467|================================ *
-10 674 867|==================================================== *
-9 747 896|==========================================================*
-8 663 670|===================================================*
-7 490 422|================================*=====
-6 282 243|==================*===
-5 163 133|==========*==
-4 100 71|=====*==
-3 45 37|==*=
-2 32 19|=*=
-1 17 10|*=
0 11 5|*
1 7 2|*
2 0 1|*
3 1 0|=
4 0 0|
> 5 21 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 214.8002
P(chi-square) = 5.373e-309

Total sequences searched: 3960

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: