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Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Ruegeria sp. TM1040  

Data for CP000377  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000377.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000377_0342 CDS_347255-349738 99.9 4.2e-28 1
CP000377_2773 CDS_2930923-2933208 93.9 2.2e-26 1
CP000377_0221 CDS_236023-237453 91.8 8.4e-26 1
CP000377_1263 CDS_1362121-1361081 83.3 2.1e-23 1
CP000377_1507 CDS_1614916-1612226 81.1 9.3e-23 1
CP000377_0962 CDS_1027874-1030345 81.0 9.8e-23 1
CP000377_1854 CDS_1954506-1956245 79.9 2e-22 1
CP000377_2745 CDS_2891848-2895138 75.0 5e-21 1
CP000377_2439 CDS_2581356-2579623 62.8 1.4e-17 1
CP000377_1815 CDS_1909253-1907502 56.5 8.7e-16 1
CP000377_1360 CDS_1455139-1452860 50.3 4.9e-14 1
CP000377_0406 CDS_418301-416325 50.1 5.5e-14 1
CP000377_1362 CDS_1457724-1456636 48.7 1.4e-13 1
CP000377_1479 CDS_1581173-1579845 48.2 1.8e-13 1
CP000377_1028 CDS_1103990-1107736 47.6 2.9e-13 1
CP000377_0830 CDS_871763-870579 46.6 5.5e-13 1
CP000377_1228 CDS_1321904-1324213 46.4 6.4e-13 1
CP000377_1216 CDS_1306760-1304451 45.4 1.2e-12 1
CP000377_2839 CDS_3007508-3008905 41.2 1.8e-11 1
CP000377_1462 CDS_1564553-1562751 41.2 1.9e-11 1
CP000377_0137 CDS_152278-151103 41.0 2.1e-11 1
CP000377_2009 CDS_2116049-2114985 35.8 6.3e-10 1
CP000377_1996 CDS_2101188-2102966 33.5 2.7e-09 1
CP000377_0316 CDS_321251-322636 33.3 3.1e-09 1
CP000377_2733 CDS_2877148-2878533 28.6 6.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000377_0342 1/1 450 515 .. 1 87 [] 99.9 4.2e-28
CP000377_2773 1/1 215 280 .. 1 87 [] 93.9 2.2e-26
CP000377_0221 1/1 77 142 .. 1 87 [] 91.8 8.4e-26
CP000377_1263 1/1 118 185 .. 1 87 [] 83.3 2.1e-23
CP000377_1507 1/1 669 736 .. 1 87 [] 81.1 9.3e-23
CP000377_0962 1/1 348 413 .. 1 87 [] 81.0 9.8e-23
CP000377_1854 1/1 185 255 .. 1 87 [] 79.9 2e-22
CP000377_2745 1/1 437 505 .. 1 87 [] 75.0 5e-21
CP000377_2439 1/1 348 413 .. 1 87 [] 62.8 1.4e-17
CP000377_1815 1/1 359 427 .. 1 87 [] 56.5 8.7e-16
CP000377_1360 1/1 511 583 .. 1 87 [] 50.3 4.9e-14
CP000377_0406 1/1 429 496 .. 1 87 [] 50.1 5.5e-14
CP000377_1362 1/1 134 198 .. 1 87 [] 48.7 1.4e-13
CP000377_1479 1/1 237 294 .. 1 87 [] 48.2 1.8e-13
CP000377_1028 1/1 1020 1088 .. 1 87 [] 47.6 2.9e-13
CP000377_0830 1/1 169 237 .. 1 87 [] 46.6 5.5e-13
CP000377_1228 1/1 395 461 .. 1 87 [] 46.4 6.4e-13
CP000377_1216 1/1 540 608 .. 1 87 [] 45.4 1.2e-12
CP000377_2839 1/1 211 272 .. 1 87 [] 41.2 1.8e-11
CP000377_1462 1/1 376 444 .. 1 87 [] 41.2 1.9e-11
CP000377_0137 1/1 163 231 .. 1 87 [] 41.0 2.1e-11
CP000377_2009 1/1 136 201 .. 1 87 [] 35.8 6.3e-10
CP000377_1996 1/1 357 430 .. 1 87 [] 33.5 2.7e-09
CP000377_0316 1/1 241 305 .. 1 87 [] 33.3 3.1e-09
CP000377_2733 1/1 240 309 .. 1 87 [] 28.6 6.9e-08

Alignments of top-scoring domains:
CP000377_0342: domain 1 of 1, from 450 to 515: score 99.9, E = 4.2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan+sHE+RTP+++I+g+a+lL e tel e+q
CP000377_0 450 TKTEFLANMSHEIRTPMNGIIGMADLLSE---------TELHEDQ-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i+ +++ ll++ind+Ldl+r+e+g
CP000377_0 486 ----------EQYVQIIRTSSKALLKIINDILDLTRMESG 515

CP000377_2773: domain 1 of 1, from 215 to 280: score 93.9, E = 2.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++++ g+aelL + t+l+eeq
CP000377_2 215 AKSAFLANMSHEIRTPMNGVVGMAELLSD---------TTLTEEQ-- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y +ti++++e ll +ind+Ld+s+iea
CP000377_2 251 ----------RLYANTIKNSGEALLVIINDVLDYSKIEAD 280

CP000377_0221: domain 1 of 1, from 77 to 142: score 91.8, E = 8.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHE+RTPL++++g+a++L + tel e q
CP000377_0 77 AKTQFLATMSHEIRTPLNGVLGMASALAD---------TELAERQ-- 112

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +++++++ ll++++d+Ldls+ie+g
CP000377_0 113 ----------SQILGVLRESGQLLLNIVDDILDLSKIEEG 142

CP000377_1263: domain 1 of 1, from 118 to 185: score 83.3, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLta++g++e+L+ +++++ ++
CP000377_1 118 MRRDFVANVSHELRTPLTALMGFIETLRG---------AARNDAAAR 155

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le+++ ea r++rL+ dlL l r e++
CP000377_1 156 ----------DRFLEIMEGEASRMNRLVGDLLSLNRVESE 185

CP000377_1507: domain 1 of 1, from 669 to 736: score 81.1, E = 9.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl+ +sHELRTP+t++r+++e+L++ ++ l++ ++
CP000377_1 669 QKDAFLSQVSHELRTPMTSVRAFSEILRD--------EPSLNPAEQ- 706

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ++i++ea rl rL+ndlLdls +e+g
CP000377_1 707 ----------HKYASIIHDEALRLTRLLNDLLDLSVLESG 736

CP000377_0962: domain 1 of 1, from 348 to 413: score 81.0, E = 9.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+++l +sHE+RTPLt+I+g +++L+ + s+eq
CP000377_0 348 AKDRLLTVMSHEMRTPLTGILGSLDVLEG---------LTPSAEQ-- 383

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++ ++e ll+ +nd+L+lsr+e+g
CP000377_0 384 ----------QRYLQAMRVSGELLLHHVNDVLQLSRLESG 413

CP000377_1854: domain 1 of 1, from 185 to 255: score 79.9, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ la++sHE+RTPL++I+g ++lLl+e+ ++ +l++ ++
CP000377_1 185 ARKTYLAHMSHEIRTPLNGIIGSVDLLLREA-----SRVNLDPREQ- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ti r+a+ l++L+nd Ld+++i+ag
CP000377_1 226 ----------NDLLRTINRSARNLQHLLNDALDIAKIDAG 255

CP000377_2745: domain 1 of 1, from 437 to 505: score 75.0, E = 5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++flan sHELRTPL++I+g +e+L+ ++ +++ + q
CP000377_2 437 MKDRFLANTSHELRTPLNGIIGILETLEGGAM------GDMLPAQ-- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i +a+rl+rL++dlLd+ ri++g
CP000377_2 476 ----------ASQLRLITFSARRLSRLVDDLLDIYRIREG 505

CP000377_2439: domain 1 of 1, from 348 to 413: score 62.8, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HE+++PL++++ ++ +L++ ++ ++
CP000377_2 348 SNEQFAADVAHEIKNPLASLQSAVGTLRM---------VHREDQR-- 383

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e+i+++++rl+rL++d+ sr++a+
CP000377_2 384 ----------EKLMEVIEHDVRRLDRLVSDISNASRLDAE 413

CP000377_1815: domain 1 of 1, from 359 to 427: score 56.5, E = 8.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a++sHEL++PL aI+ +ae +++l+ +se
CP000377_1 359 ALGQMSAGISHELNQPLMAIQQFAENGQAFLE------RGKSERA-- 397

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l +i + + r+ r+i +l+ ++r e++
CP000377_1 398 ----------GENLTRIAQMSARMARIIKNLRAFARNESE 427

CP000377_1360: domain 1 of 1, from 511 to 583: score 50.3, E = 4.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ +++ +e ++q+
CP000377_1 511 AWGDVARRIAHEIKNPLTPIQLSAERIKRKF---APKLSEEQSDQL- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i r+++ l+r+++++ ++r+ ++
CP000377_1 554 ----------QSMTDVIVRQTNDLRRIVDEFSKFARMPEP 583

CP000377_0406: domain 1 of 1, from 429 to 496: score 50.1, E = 5.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e +a+++HE+++P+++I+g+++++++ l +++ e+
CP000377_0 429 SIGEITAGVAHEINNPVAVIQGNVDVMRMTL-------GDAAEPV-- 466

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ i++++ r+ +++ lL+++r +
CP000377_0 467 ----------RTELDLIDNQVMRIGAIVGKLLQFARPSEF 496

CP000377_1362: domain 1 of 1, from 134 to 198: score 48.7, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +l+HE+++PL++I g+a+lL + +ls ++
CP000377_1 134 SAIGMAEMLAHEIKNPLAGITGAAQLLSM----------NLSTDD-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ i +e++r+ +L++++ ++ + ++
CP000377_1 169 ----------LELTDLIVSESRRIVKLLEQVEQFGNLSEP 198

CP000377_1479: domain 1 of 1, from 237 to 294: score 48.2, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRTPLt +++ +++L + ee
CP000377_1 237 QRTLMLSGVSHDLRTPLTRLKLSLSMLDD-------------EEA-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +l++++ ++++++ +Ld+sr +
CP000377_1 269 --------------EPMLQDVKEMEAMVDAFLDFSRGVTT 294

CP000377_1028: domain 1 of 1, from 1020 to 1088: score 47.6, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ l+H+L++PL++I g +++L eel ++ + ++
CP000377_1 1020 DMRRFAYVLAHDLKQPLNTIEGSVQALDEEL-------PKTLDADI- 1058

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + +++ ++rl + +n +Ld++r++ +
CP000377_1 1059 ----------HELMRFLQQGTQRLKARVNAVLDYARLQDQ 1088

CP000377_0830: domain 1 of 1, from 169 to 237: score 46.6, E = 5.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+L+ P +++ +++ + a d+ +seeq
CP000377_0 169 ELRSFAYSISHDLKSPTNTMDMLLREIAI------ADDGGMSEEQ-- 207

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+t+++ a+r+++L++d+Ld++r+ +
CP000377_0 208 ----------RELLHTAQETANRMRSLVDDMLDYTRLIGE 237

CP000377_1228: domain 1 of 1, from 395 to 461: score 46.4, E = 6.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl ++++++++
CP000377_1 395 AIGQLAGGVAHDFNNLLTAISGHCDLLLL--------RHDQGDQD-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i++ a+r +L+++lL +sr ++
CP000377_1 432 ----------YGDLIQIHENANRAAALVSQLLAFSRKQTL 461

CP000377_1216: domain 1 of 1, from 540 to 608: score 45.4, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ +sH+L+ PL a++ +a L+e+l+ ++l+ee+
CP000377_1 540 DLEEFAYVASHDLKAPLRAVSHAATWLEEDLE------EHLTEET-- 578

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ +++ + r++ L++dlL s+i++
CP000377_1 579 ----------TEHLHYMKSRILRMSGLLDDLLAHSKIGTR 608

CP000377_2839: domain 1 of 1, from 211 to 272: score 41.2, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +a+++HEL TPL++I+++++ L eel ++++e
CP000377_2 211 DLGGVVAAAAHELGTPLATIKLTSSELIEEL--------DQNPEL-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+++a+r++++++ + +ag
CP000377_2 248 ----------QDDARLIREQADRCRDILRSM-----GRAG 272

CP000377_1462: domain 1 of 1, from 376 to 444: score 41.2, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a++sHEL++PL+a+++y+ ++ l ++++e
CP000377_1 376 ALGEMSAAVSHELNQPLAAMKTYLAGARLLLQ------RNRPDEA-- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i++ +er+ ++ ++l ++r +
CP000377_1 415 ----------LSSFGRIDDLIERMGAITRQLKSYARKGGD 444

CP000377_0137: domain 1 of 1, from 163 to 231: score 41.0, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ sef +lsH+L+ P+++I +++++++eel ++ se +
CP000377_0 163 ETSEFSYALSHDLKSPINTIGMLLDAIREEL-------PPDSESE-- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + aer+ rLi+d+L++s+ +
CP000377_0 201 ---------CADLVSDASLTAERMKRLIDDVLQYSQVVGN 231

CP000377_2009: domain 1 of 1, from 136 to 201: score 35.8, E = 6.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++ ++H+LRTP+ +r+ ae+L+e++ +++++ +
CP000377_2 136 EIEDFVSLAAHDLRTPMRHVRTIAEMLREDF-------EDMGDGK-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ +++ + r +Li+d+ l+ ++a
CP000377_2 174 ----------LELIDMLEQIGTRATQLISDI--LAHAQAT 201

CP000377_1996: domain 1 of 1, from 357 to 430: score 33.5, E = 2.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ +sH+L+TP +I +++++++eel+ + l + q++
CP000377_1 357 EIEQFVYVASHDLKTPARGIGFLVDVIEEELE------DVLKSAQNR 397

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eL + l+ i++ + r+++L ++++sr ++
CP000377_1 398 GEL-------QMQLDMIRDRVARMNDLTKGIMEFSRVGHY 430

CP000377_0316: domain 1 of 1, from 241 to 305: score 33.3, E = 3.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a +sH+LR+ Lt+ +++++ +++ ++
CP000377_0 241 QLGGAVAKISHDLRNILTSAQLFTDRIEM----------SEDPLV-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++ +++ r +L + L + r+e++
CP000377_0 276 ----------RRLAPKLVNSITRAVSLCEGTLAFGRAEEP 305

CP000377_2733: domain 1 of 1, from 240 to 309: score 28.6, E = 6.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a ++H RTPLt++r+ ae+ l+++ ++ q+
CP000377_2 240 RSEDLIAEAAHRVRTPLTTVRTQAEITLRRV-------DKPENRQA- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re+++ i+++++ +L++ + r ++
CP000377_2 279 ---------VREMIRAIDESSRAAGQLLDHAMVSFRSDHL 309


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 2 0|=
-13 26 2|*==
-12 117 69|======*====
-11 272 359|========================= *
-10 505 666|============================================== *
-9 622 688|========================================================= *
-8 526 515|==============================================*=
-7 375 324|=============================*=====
-6 225 186|================*====
-5 148 102|=========*====
-4 75 54|====*==
-3 45 28|==*==
-2 27 15|=*=
-1 17 7|*=
0 8 4|*
1 7 2|*
2 4 1|*
3 0 0|
4 1 0|=
> 5 28 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 171.2226
P(chi-square) = 6.61e-31

Total sequences searched: 3030

Whole sequence top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: