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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Ruegeria sp. TM1040  

Data for CP000377  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000377.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000377_2723 CDS_2866903-2868744 78.0 3.8e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000377_2723 1/1 404 462 .. 1 64 [. 78.0 3.8e-22

Alignments of top-scoring domains:
CP000377_2723: domain 1 of 1, from 404 to 462: score 78.0, E = 3.8e-22
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E HHRVKNNLQ+ISS++++Q r+++++ + +aL+ +RV S
CP000377_2 404 ELHHRVKNNLQLISSIISMQMRRTRNQVT-----AAALKTVNQRVTS 445

mAliHEeLYksedldtv<-*
mA++H+ LY+ +l++v
CP000377_2 446 MATVHQTLYQASELGQV 462


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 2 0|=
-14 3 0|=
-13 29 18|=*=
-12 138 199|========== *
-11 800 554|=======================================*==================
-10 710 717|===================================================*
-9 531 605|====================================== *
-8 343 406|========================= *
-7 171 241|============= *
-6 166 134|=========*==
-5 52 72|==== *
-4 33 38|==*
-3 29 20|=*=
-2 12 10|*
-1 5 5|*
0 2 2|*
1 2 1|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 190.8111
P(chi-square) = 2.557e-34

Total sequences searched: 3030

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: