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Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Burkholderia cenocepacia AU 1054  

Data for CP000379  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000379.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000379_0742 CDS_867541-864119 81.6 5.5e-23 1
CP000379_0998 CDS_1158602-1156602 71.2 4.6e-20 1
CP000379_1681 CDS_1947209-1945785 68.7 2.4e-19 1
CP000379_1085 CDS_1252349-1253833 66.2 1.2e-18 1
CP000379_1126 CDS_1299249-1297825 61.0 3.6e-17 1
CP000379_1756 CDS_2029438-2030847 59.5 9.5e-17 1
CP000379_0444 CDS_533857-534987 59.1 1.3e-16 1
CP000379_0583 CDS_694062-695513 57.5 3.6e-16 1
CP000379_0455 CDS_556458-555091 54.3 2.9e-15 1
CP000379_1798 CDS_2069307-2071139 52.3 1.1e-14 1
CP000379_2044 CDS_2330355-2331440 44.7 1.5e-12 1
CP000379_1513 CDS_1764684-1765463 39.1 5.7e-11 1
CP000379_1956 CDS_2230585-2229140 36.4 3.5e-10 1
CP000379_0195 CDS_240942-242840 33.6 2.2e-09 1
CP000379_0040 CDS_47364-45460 26.9 1.7e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000379_0742 1/1 686 753 .. 1 87 [] 81.6 5.5e-23
CP000379_0998 1/1 282 347 .. 1 87 [] 71.2 4.6e-20
CP000379_1681 1/1 242 308 .. 1 87 [] 68.7 2.4e-19
CP000379_1085 1/1 234 301 .. 1 87 [] 66.2 1.2e-18
CP000379_1126 1/1 244 309 .. 1 87 [] 61.0 3.6e-17
CP000379_1756 1/1 247 313 .. 1 87 [] 59.5 9.5e-17
CP000379_0444 1/1 161 226 .. 1 87 [] 59.1 1.3e-16
CP000379_0583 1/1 255 320 .. 1 87 [] 57.5 3.6e-16
CP000379_0455 1/1 230 295 .. 1 87 [] 54.3 2.9e-15
CP000379_1798 1/1 235 300 .. 1 87 [] 52.3 1.1e-14
CP000379_2044 1/1 134 198 .. 1 87 [] 44.7 1.5e-12
CP000379_1513 1/1 28 95 .. 1 87 [] 39.1 5.7e-11
CP000379_1956 1/1 257 319 .. 1 80 [. 36.4 3.5e-10
CP000379_0195 1/1 404 474 .. 1 87 [] 33.6 2.2e-09
CP000379_0040 1/1 398 466 .. 1 87 [] 26.9 1.7e-07

Alignments of top-scoring domains:
CP000379_0742: domain 1 of 1, from 686 to 753: score 81.6, E = 5.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ +++lsHELRTPL++I+gya+lLl +el++
CP000379_0 686 AKSRYVSGLSHELRTPLNSILGYAQLLLQ-------AKEELTPMR-- 723

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ti+r++e+ll+L++ lLd++rieag
CP000379_0 724 ----------YNAVRTIHRSGEHLLALVDGLLDIARIEAG 753

CP000379_0998: domain 1 of 1, from 282 to 347: score 71.2, E = 4.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ ++
CP000379_0 282 LKDELLATVSHELRTPLNVIYGWVEVLRN---------ADGQGFA-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l++++ dlLd s + +g
CP000379_0 318 ----------QQAVDAIDRSARSLSHMVADLLDASSLATG 347

CP000379_1681: domain 1 of 1, from 242 to 308: score 68.7, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +nl+H++RTPLt ++++a++ l +++s+++
CP000379_1 242 RLSQFSSNLAHDMRTPLTNLQAAAQVVLS---------QPRSADE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +e+ ++e +rl+r+i+d+L l+r e+
CP000379_1 278 ---------YRSVIESSIDEYQRLSRMIEDMLFLARSEQA 308

CP000379_1085: domain 1 of 1, from 234 to 301: score 66.2, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTP++ ++g ++++l+ + ++s + +
CP000379_1 234 RLEAFNADVAHELRTPISILIGQTQVALT--------SRDRSVDRM- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++ l+e erl+ +ind+L lsr + g
CP000379_1 272 ----------RQTLQSNLEEFERLRVIINDMLLLSRSDRG 301

CP000379_1126: domain 1 of 1, from 244 to 309: score 61.0, E = 3.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+a+++ +el+l+ ++ +
CP000379_1 244 ARRRFFADAAHQLKTPLAAVQAGVELALR---------PDEQPRA-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++++ +++++lL lsr+++
CP000379_1 280 ----------NVHLRRANGAVRQAAKIVQQLLSLSRLDSD 309

CP000379_1756: domain 1 of 1, from 247 to 313: score 59.5, E = 9.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f ++l+H++RTPL+ ++ +++ l +++ ++
CP000379_1 247 RLSQFSSDLAHDMRTPLANVISSSQITLS---------RARTTDE-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++e+ ++e erl+r+i+++L l+r ++
CP000379_1 283 ---------YEALIESNIEECERLQRMIENMLFLARTDNA 313

CP000379_0444: domain 1 of 1, from 161 to 226: score 59.1, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELRTPL+ +r+++e+L+e + s+ +
CP000379_0 161 AQRDLTNGISHELRTPLARVRFALEMLRE----------PGSAAE-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l++i +++ l++Li+ L+++r+e
CP000379_0 196 ---------YQGALDSIAQDVTELEELIDMSLTYARLEYS 226

CP000379_0583: domain 1 of 1, from 255 to 320: score 57.5, E = 3.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l HE++ PL+aI+g+aelL+e +++ r
CP000379_0 255 YVETYIHTLTHEMKSPLAAISGAAELLQE----------DMPVANR- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e i+r+a rl+++i+ lL l+ e+
CP000379_0 291 ----------RRFTENIRRQAGRLEQMIRKLLALAEVEQK 320

CP000379_0455: domain 1 of 1, from 230 to 295: score 54.3, E = 2.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELRTP+ +++ ++lL++ +++ e+r
CP000379_0 230 LQRHFIADAAHELRTPIMGLSIQSQLLRR----------AATVEER- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l i+ + rl +L ++lL+l+r+e
CP000379_0 266 ----------EHILAQIQAGTTRLGHLAEQLLTLARLEPD 295

CP000379_1798: domain 1 of 1, from 235 to 300: score 52.3, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL aI g +e+Ll+ ++s+
CP000379_1 235 AKNAFLGMVSHELRTPLQAICGSIEILLA---------RPQSDAN-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++a +l++L+ dl d+ ++++
CP000379_1 271 ----------LKTIRRLQNSALSLEALVKDLTDYIKLRST 300

CP000379_2044: domain 1 of 1, from 134 to 198: score 44.7, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a+++HELRTP+t++rg ++ L e + ++ +
CP000379_2 134 EQTFWNAAIAHELRTPVTVLRGRLQGLAE---------GVFTPSD-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l ++e l rLi+dl+ s +++g
CP000379_2 170 -----------ALYRSLLVQVEGLTRLIEDLRVVSLADSG 198

CP000379_1513: domain 1 of 1, from 28 to 95: score 39.1, E = 5.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sH+LR PL+a+ a +L+++l +++++
CP000379_1 28 LRDQALSTASHDLRSPLNAMHSWAYVLERQL-------ANADPNL-- 65

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ +++ +Li+ +Ld r+e+
CP000379_1 66 ----------QRALAGIRTGIDQQVALIDGVLDAPRAETR 95

CP000379_1956: domain 1 of 1, from 257 to 319: score 36.4, E = 3.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+l+HEL++PLtaI +++ ++++ ld t+ + +
CP000379_1 257 TLGEMAAGLAHELNQPLTAIVTHTRAAERMLD------TPSERDSV- 296

peLRledpeyreyletilreaerllrLindlLd<-*
r++l+t +a+r +++++l++
CP000379_1 297 ----------RRALQTSVAQAKRAAAILDRLRT 319

CP000379_0195: domain 1 of 1, from 404 to 474: score 33.6, E = 2.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE +PL+aI ++ e+ + + ++s+++
CP000379_0 404 MLGELAASIAHEVTQPLAAIVTAGEAGMR--------WIKRSPPD-- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ +l + ++a+r + i +++ +++ + +
CP000379_0 441 ------FTEVQYALGQMTHDARRATQVIHQIRSMAQRRDP 474

CP000379_0040: domain 1 of 1, from 398 to 466: score 26.9, E = 1.7e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+l HEL++PL aIr++++ ++++++ ++++
CP000379_0 398 VLGQMAAGLTHELNQPLVAIRTLCDNARTFFE------RGQPAPA-- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++ + ++ + L +l +++r
CP000379_0 437 ----------LANLERVGKLVDGMAVLTGELKTFARKPDV 466


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 7 0|=
-13 13 1|*=
-12 92 56|======*====
-11 220 293|========================= *
-10 421 543|=============================================== *
-9 486 561|====================================================== *
-8 470 420|==============================================*======
-7 310 264|=============================*=====
-6 189 152|================*====
-5 117 83|=========*===
-4 62 44|====*==
-3 32 23|==*=
-2 9 12|=*
-1 10 6|*=
0 5 3|*
1 4 1|*
2 3 0|=
> 3 22 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 126.3705
P(chi-square) = 9.429e-22

Total sequences searched: 2472

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: