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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Rubrobacter xylanophilus DSM 9941  

Data for CP000386  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000386.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000386_1251 CDS_1288442-1291651 107.9 2.4e-30 1
CP000386_2599 CDS_2675914-2680023 107.9 2.4e-30 1
CP000386_2947 CDS_3025546-3026961 83.7 1.7e-23 1
CP000386_2911 CDS_2988322-2986496 81.4 8e-23 1
CP000386_0183 CDS_189642-188212 79.0 3.7e-22 1
CP000386_0374 CDS_408716-406992 72.7 2.2e-20 1
CP000386_2715 CDS_2792864-2793637 66.3 1.5e-18 1
CP000386_0769 CDS_819849-818095 64.3 5.4e-18 1
CP000386_0297 CDS_313672-315426 58.5 2.4e-16 1
CP000386_0101 CDS_107722-109641 56.0 1.2e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000386_1251 1/1 328 393 .. 1 87 [] 107.9 2.4e-30
CP000386_2599 1/1 632 697 .. 1 87 [] 107.9 2.4e-30
CP000386_2947 1/1 244 311 .. 1 87 [] 83.7 1.7e-23
CP000386_2911 1/1 375 440 .. 1 87 [] 81.4 8e-23
CP000386_0183 1/1 237 302 .. 1 87 [] 79.0 3.7e-22
CP000386_0374 1/1 357 420 .. 1 83 [. 72.7 2.2e-20
CP000386_2715 1/1 25 92 .. 1 87 [] 66.3 1.5e-18
CP000386_0769 1/1 352 419 .. 1 87 [] 64.3 5.4e-18
CP000386_0297 1/1 360 428 .. 1 87 [] 58.5 2.4e-16
CP000386_0101 1/1 422 490 .. 1 87 [] 56.0 1.2e-15

Alignments of top-scoring domains:
CP000386_1251: domain 1 of 1, from 328 to 393: score 107.9, E = 2.4e-30
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksef+an+sHE+RTP+++++g+aelLl+ t+l++eq
CP000386_1 328 AKSEFVANMSHEIRTPMNGVIGMAELLLD---------TPLTPEQ-- 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey +ti++++e ll+++nd+Ld+s+ieag
CP000386_1 364 ----------REYARTIRSSGEALLAILNDILDFSKIEAG 393

CP000386_2599: domain 1 of 1, from 632 to 697: score 107.9, E = 2.4e-30
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksef+an+sHE+RTP+++++g+aelLl+ t+l++eq
CP000386_2 632 AKSEFVANMSHEIRTPMNGVIGMAELLLD---------TPLTPEQ-- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey +ti++++e ll+++nd+Ld+s+ieag
CP000386_2 668 ----------REYARTIRSSGEALLAILNDILDFSKIEAG 697

CP000386_2947: domain 1 of 1, from 244 to 311: score 83.7, E = 1.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+I gya +L++++ + ++
CP000386_2 244 RQRRFAADASHELRTPLTSIAGYARMLERWA-------LKDPDAA-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re i+reaer+++L+++lL l+r ++g
CP000386_2 282 ----------REGAAAIRREAERMQHLVEELLALARGDEG 311

CP000386_2911: domain 1 of 1, from 375 to 440: score 81.4, E = 8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak ef+an+sHEL+TP++a++gy+e+L++ e++ee r
CP000386_2 375 AKAEFIANASHELKTPISALSGYLEMLED----------EQDEEVR- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ ++ ++erl++L + lLdlsr++a+
CP000386_2 411 ----------AEFLREMRTQTERLQNLARTLLDLSRLDAN 440

CP000386_0183: domain 1 of 1, from 237 to 302: score 79.0, E = 3.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++efla++sHELRTPLt++rg+ae+ l ++e ++
CP000386_0 237 ARTEFLADASHELRTPLTVLRGNAEVGLQ----------LATEGEV- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ i ea r+ r+++d+L l+r ea
CP000386_0 273 ----------REILQEIVGEAGRMARMVEDMLFLARSEAA 302

CP000386_0374: domain 1 of 1, from 357 to 420: score 72.7, E = 2.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++flan++HEL+TP+taI+g+aelLl+ ++e ++e r
CP000386_0 357 RQQRFLANAAHELKTPITAILGAAELLLT--------EEEDDPEVR- 394

peLRledpeyreyletilreaerllrLindlLdlsr<-*
r++le i++ea+r++rL + lL l+r
CP000386_0 395 ----------RRFLEHIHSEARRMQRLSETLLRLAR 420

CP000386_2715: domain 1 of 1, from 25 to 92: score 66.3, E = 1.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP t+++++ae L+ e ++eq+
CP000386_2 25 IRRDFVANVSHELKTPATSLKLLAESLEQ--------AIEEDPEQA- 62

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +++e+erl rLi dlLdl+r+e++
CP000386_2 63 ----------RLFAAQLRKETERLARLITDLLDLARLESE 92

CP000386_0769: domain 1 of 1, from 352 to 419: score 64.3, E = 5.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+++ sHELRTPLt+I+ ++ lL++ ++ l++ +
CP000386_0 352 AKSAFVSDFSHELRTPLTTIQSAVGLLQR-------ARERLDPLE-- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le ++ e+ r+++++++l++l+++++
CP000386_0 390 ----------NRALELAEGELSRIRAMVEELMTLAQMDSW 419

CP000386_0297: domain 1 of 1, from 360 to 428: score 58.5, E = 2.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL +I g++++Lle++ + l++e
CP000386_0 360 ELEAFSYSVSHDLRAPLRSIEGFSQILLEDYG------ERLDAEG-- 398

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl++++r+++r+ Li+ lL lsr++
CP000386_0 399 ----------RDYLNRVRRASQRMALLIDALLGLSRLGRR 428

CP000386_0101: domain 1 of 1, from 422 to 490: score 56.0, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++H+LR PL ++ g+a++Lle+ + l+++
CP000386_0 422 ELEQFAYLIAHDLRAPLRSMDGFAQILLEDCA------PRLGPDG-- 460

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl +i+r+++ + r+i++lL lsr+
CP000386_0 461 ----------REYLARIQRATRKMARMIDELLGLSRLARA 490


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-13 11 2|*
-12 74 71|======*
-11 238 372|====================== *
-10 511 690|=============================================== *
-9 643 713|==========================================================*
-8 535 533|================================================*
-7 427 336|==============================*========
-6 285 193|=================*========
-5 169 106|=========*======
-4 108 56|=====*====
-3 66 30|==*===
-2 20 15|=*
-1 20 8|*=
0 10 4|*
1 6 2|*
2 4 1|*
3 2 0|=
> 4 11 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 313.6640
P(chi-square) = 0

Total sequences searched: 3140

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: