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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Rubrobacter xylanophilus DSM 9941  

Data for CP000386  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000386.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000386_1532 CDS_1571805-1570582 96.7 2.5e-28 1
CP000386_0156 CDS_166077-167603 80.5 1.5e-23 1
CP000386_2548 CDS_2635266-2636441 74.1 1.2e-21 1
CP000386_2742 CDS_2820580-2819075 66.8 1.6e-19 1
CP000386_0693 CDS_737949-736807 49.0 2.9e-14 1
CP000386_2450 CDS_2526117-2528039 37.4 7.7e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000386_1532 1/1 209 277 .. 1 70 [] 96.7 2.5e-28
CP000386_0156 1/1 297 364 .. 1 70 [] 80.5 1.5e-23
CP000386_2548 1/1 192 260 .. 1 70 [] 74.1 1.2e-21
CP000386_2742 1/1 291 358 .. 1 70 [] 66.8 1.6e-19
CP000386_0693 1/1 184 251 .. 1 70 [] 49.0 2.9e-14
CP000386_2450 1/1 433 500 .. 1 70 [] 37.4 7.7e-11

Alignments of top-scoring domains:
CP000386_1532: domain 1 of 1, from 209 to 277: score 96.7, E = 2.5e-28
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARE+HD vg++L+++++qle+a +ll ++dp++a+ea++++
CP000386_1 209 ERNRIAREIHDAVGHHLTVVNVQLEAAGKLL--ARDPGRAAEAVARA 253

relarealaevRrllgdLR.paal<-*
+ a+eal+e+Rr++++L++p+ +
CP000386_1 254 KSSASEALSEARRAVRALKpPSME 277

CP000386_0156: domain 1 of 1, from 297 to 364: score 80.5, E = 1.5e-23
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+A E+HD+++Q++++i le+a +l ++d +++r++l+++
CP000386_0 297 ERQRLAHEIHDTLAQGFTSIVTNLEAAGGAL--QRDRAALRRHLEQA 341

relarealaevRrllgdLRpaal<-*
+ are+l+e+Rrl+++LRp l
CP000386_0 342 LAVARESLSEARRLVWALRPEPL 364

CP000386_2548: domain 1 of 1, from 192 to 260: score 74.1, E = 1.2e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+ARE+HD+++Q+L+a +l le+a++ll+ + p+ear+++ ++
CP000386_2 192 ERNRLAREIHDTIAQGLAATALRLETAEALLE-AGSPAEARKEISRA 237

relarealaevRrllgdLRpaal<-*
+l r+ l+e+Rr + dLR a l
CP000386_2 238 LALTRTNLEEARRSVLDLRAAPL 260

CP000386_2742: domain 1 of 1, from 291 to 358: score 66.8, E = 1.6e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ AR+LHDsv Q+ +a +lql +ar+ll d+d ++a e+l+++
CP000386_2 291 ARNQFARDLHDSVKQQVFATSLQLAAARALL--DDDSGAAGEHLAQA 335

relarealaevRrllgdLRpaal<-*
+el++ a++e+ l++++Rpaal
CP000386_2 336 QELVQGAQRELNVLIHEMRPAAL 358

CP000386_0693: domain 1 of 1, from 184 to 251: score 49.0, E = 2.9e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R++RELHD +++s+++++ lel ++l+ ++dp++ar++l+++
CP000386_0 184 ERRRLSRELHDRLAHSMALVAQSLELHEALA--ASDPAAARQRLRRA 228

relarealaevRrllgdLRpaal<-*
+e+ar++ + +R+l+++LR ++
CP000386_0 229 AEAARRSVEAARHLARELRGSEA 251

CP000386_2450: domain 1 of 1, from 433 to 500: score 37.4, E = 7.7e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe...eareal
ER+R A E HD+v Q a+ l++ + d++p++++ + +l
CP000386_2 433 ERRRVAYEVHDGVTQVAIAAHQNLQAFA-----DDHPPgstVDAGEL 474

deirelarealaevRrllgdLRpaal<-*
d+ ela+++ e+Rr++ +LRp++l
CP000386_2 475 DRPLELAQQTVVEARRVIEGLRPTVL 500


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-13 8 0|=
-12 17 35|=== *
-11 55 287|======= *
-10 229 667|============================= *
-9 415 758|==================================================== *
-8 374 584|=============================================== *
-7 435 367|=============================================*=========
-6 412 207|=========================*==========================
-5 464 111|=============*============================================
-4 264 58|=======*=========================
-3 150 29|===*===============
-2 132 15|=*===============
-1 69 7|*========
0 34 3|*====
1 22 2|*==
2 26 1|*===
3 7 0|=
4 7 0|=
5 4 0|=
6 3 0|=
7 0 0|
8 0 0|
9 2 0|=
10 0 0|
11 0 0|
12 1 0|=
13 0 0|
14 1 0|=
15 0 0|
> 16 9 -|==


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 4623.2139
P(chi-square) = 0

Total sequences searched: 3140

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: