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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Pseudoalteromonas atlantica T6c  

Data for CP000388  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000388.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000388_3573 CDS_4342028-4345546 97.8 2.3e-27 1
CP000388_0503 CDS_588406-585269 90.0 3.7e-25 1
CP000388_2644 CDS_3248218-3246230 88.6 9.5e-25 1
CP000388_2234 CDS_2735779-2732348 87.5 1.9e-24 1
CP000388_2527 CDS_3084705-3086423 86.4 4e-24 1
CP000388_4259 CDS_5164343-5167378 86.2 4.5e-24 1
CP000388_2089 CDS_2548103-2551231 85.9 5.7e-24 1
CP000388_3512 CDS_4257780-4253284 85.2 8.7e-24 1
CP000388_3692 CDS_4483430-4486141 84.9 1e-23 1
CP000388_4118 CDS_4994416-4992428 76.5 2.6e-21 1
CP000388_2796 CDS_3419195-3421357 75.9 3.9e-21 1
CP000388_1047 CDS_1259106-1260416 71.7 6.1e-20 1
CP000388_3882 CDS_4723477-4725996 69.8 2e-19 1
CP000388_0216 CDS_261346-259847 66.9 1.4e-18 1
CP000388_3716 CDS_4512347-4510002 66.7 1.5e-18 1
CP000388_1738 CDS_2095769-2093787 65.9 2.6e-18 1
CP000388_1288 CDS_1560574-1556903 65.2 4.1e-18 1
CP000388_3023 CDS_3682493-3681297 62.3 2.8e-17 1
CP000388_2067 CDS_2528328-2526184 62.0 3.2e-17 1
CP000388_1517 CDS_1835508-1834057 61.5 4.6e-17 1
CP000388_1020 CDS_1220581-1221660 60.9 6.8e-17 1
CP000388_0981 CDS_1179575-1180978 59.9 1.3e-16 1
CP000388_3385 CDS_4086438-4087853 59.5 1.7e-16 1
CP000388_0519 CDS_610831-607394 59.3 1.9e-16 1
CP000388_1858 CDS_2265521-2262951 57.2 7.5e-16 1
CP000388_2286 CDS_2802110-2803462 55.9 1.7e-15 1
CP000388_0639 CDS_744680-743439 54.4 4.6e-15 1
CP000388_3552 CDS_4309943-4311136 53.9 6.4e-15 1
CP000388_2237 CDS_2737324-2738556 51.9 2.4e-14 1
CP000388_3886 CDS_4730998-4728746 51.8 2.6e-14 1
CP000388_0225 CDS_268761-270059 46.0 1.2e-12 1
CP000388_2082 CDS_2542589-2541393 44.2 3.6e-12 2
CP000388_1590 CDS_1906292-1907695 41.3 2.4e-11 1
CP000388_1970 CDS_2415420-2412004 40.4 4.3e-11 1
CP000388_1522 CDS_1838107-1839600 37.4 3.1e-10 2
CP000388_1823 CDS_2219645-2215620 36.0 7.6e-10 1
CP000388_3515 CDS_4263993-4262437 35.5 1.1e-09 1
CP000388_4120 CDS_4996373-4994892 33.5 3.9e-09 1
CP000388_0420 CDS_499547-501946 30.4 3e-08 1
CP000388_3541 CDS_4294723-4295976 28.8 8.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000388_3573 1/1 659 724 .. 1 87 [] 97.8 2.3e-27
CP000388_0503 1/1 431 496 .. 1 87 [] 90.0 3.7e-25
CP000388_2644 1/1 288 353 .. 1 87 [] 88.6 9.5e-25
CP000388_2234 1/1 569 634 .. 1 87 [] 87.5 1.9e-24
CP000388_2527 1/1 196 261 .. 1 87 [] 86.4 4e-24
CP000388_4259 1/1 424 490 .. 1 87 [] 86.2 4.5e-24
CP000388_2089 1/1 513 578 .. 1 87 [] 85.9 5.7e-24
CP000388_3512 1/1 864 929 .. 1 87 [] 85.2 8.7e-24
CP000388_3692 1/1 392 457 .. 1 87 [] 84.9 1e-23
CP000388_4118 1/1 146 211 .. 1 87 [] 76.5 2.6e-21
CP000388_2796 1/1 231 294 .. 1 87 [] 75.9 3.9e-21
CP000388_1047 1/1 205 272 .. 1 87 [] 71.7 6.1e-20
CP000388_3882 1/1 335 400 .. 1 87 [] 69.8 2e-19
CP000388_0216 1/1 267 335 .. 1 87 [] 66.9 1.4e-18
CP000388_3716 1/1 285 350 .. 1 87 [] 66.7 1.5e-18
CP000388_1738 1/1 304 370 .. 1 87 [] 65.9 2.6e-18
CP000388_1288 1/1 854 920 .. 1 87 [] 65.2 4.1e-18
CP000388_3023 1/1 159 225 .. 1 87 [] 62.3 2.8e-17
CP000388_2067 1/1 220 285 .. 1 87 [] 62.0 3.2e-17
CP000388_1517 1/1 259 323 .. 1 87 [] 61.5 4.6e-17
CP000388_1020 1/1 131 188 .. 1 79 [. 60.9 6.8e-17
CP000388_0981 1/1 244 312 .. 1 87 [] 59.9 1.3e-16
CP000388_3385 1/1 229 291 .. 1 87 [] 59.5 1.7e-16
CP000388_0519 1/1 784 849 .. 1 87 [] 59.3 1.9e-16
CP000388_1858 1/1 492 557 .. 1 87 [] 57.2 7.5e-16
CP000388_2286 1/1 235 297 .. 1 87 [] 55.9 1.7e-15
CP000388_0639 1/1 183 248 .. 1 87 [] 54.4 4.6e-15
CP000388_3552 1/1 173 238 .. 1 87 [] 53.9 6.4e-15
CP000388_2237 1/1 201 270 .. 1 87 [] 51.9 2.4e-14
CP000388_3886 1/1 523 588 .. 1 87 [] 51.8 2.6e-14
CP000388_0225 1/1 222 282 .. 1 87 [] 46.0 1.2e-12
CP000388_2082 1/2 157 232 .. 1 87 [] 42.9 8.7e-12
CP000388_1590 1/1 242 310 .. 1 87 [] 41.3 2.4e-11
CP000388_1970 1/1 775 840 .. 1 87 [] 40.4 4.3e-11
CP000388_1823 1/1 824 891 .. 1 87 [] 36.0 7.6e-10
CP000388_3515 1/1 296 364 .. 1 87 [] 35.5 1.1e-09
CP000388_4120 1/1 254 322 .. 1 87 [] 33.5 3.9e-09
CP000388_1522 1/2 247 291 .. 1 68 [. 31.3 1.6e-08
CP000388_0420 1/1 574 641 .. 1 87 [] 30.4 3e-08
CP000388_3541 1/1 198 253 .. 1 82 [. 28.8 8.3e-08

Alignments of top-scoring domains:
CP000388_3573: domain 1 of 1, from 659 to 724: score 97.8, E = 2.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++I g+ +lLl+ tel+++q
CP000388_3 659 AKSEFLANMSHEIRTPINGIVGMNDLLLA---------TELTDKQ-- 694

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e +++++e+ll Lind+Ld+s+ieag
CP000388_3 695 ----------RHFAELVHSSSESLLLLINDILDFSKIEAG 724

CP000388_0503: domain 1 of 1, from 431 to 496: score 90.0, E = 3.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE+RTPL+aI+g+++ L+ ++ s+++
CP000388_0 431 VKSQFLANMSHEIRTPLNAILGFSKELQQ---------GDFSADK-- 466

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i +a+ l ++nd+Ld s+ieag
CP000388_0 467 ----------RDQINIINAAADNLMTIVNDVLDVSKIEAG 496

CP000388_2644: domain 1 of 1, from 288 to 353: score 88.6, E = 9.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s flan+sHE+RTP+++++g++++L + + l+ eq
CP000388_2 288 ARSLFLANMSHEIRTPINGVLGMLQILDA---------SSLDNEQ-- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l ++++a +ll +ind+Ld+++i++g
CP000388_2 324 ----------RRFLGLAKDSATSLLGIINDILDFTKIDSG 353

CP000388_2234: domain 1 of 1, from 569 to 634: score 87.5, E = 1.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ flan+sHE+RTP++aI+g++++Ll+ ++ ++q
CP000388_2 569 ARAAFLANMSHEIRTPMNAIIGFSDILLD---------DAIEPDQ-- 604

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ti ++a++ll+L+nd+Ld ++++ g
CP000388_2 605 ----------KKHLTTINKSAKSLLHLLNDILDSAKLDKG 634

CP000388_2527: domain 1 of 1, from 196 to 261: score 86.4, E = 4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP+++++g++el t+l q
CP000388_2 196 AKSAFLANMSHEIRTPMNGVIGMIELVSQ---------TKLEKVQ-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ t++r+a++l +ind+Ld+s+ie g
CP000388_2 232 ----------QDYIATAKRSADSLMVIINDILDFSKIEVG 261

CP000388_4259: domain 1 of 1, from 424 to 490: score 86.2, E = 4.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHE+RTPLt+I+gya+ +l ++ + ++
CP000388_4 424 AKDYFLANMSHEIRTPLTSIIGYADGILL---------GDIDKAEQ- 460

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i++ + +llr+ind+Ldls+i+a+
CP000388_4 461 ----------ERVTNIIYQNGAHLLRIINDILDLSKIDAN 490

CP000388_2089: domain 1 of 1, from 513 to 578: score 85.9, E = 5.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f++n+sHE+RTPL++I+g++ l ++ ++lse q
CP000388_2 513 IKSAFISNISHEMRTPLNGIIGTLNLVKR---------EHLSENQ-- 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e + +++ l+ L+nd+Ldls+ieag
CP000388_2 549 ----------QRYIEMTEVSVNTLSTLVNDVLDLSKIEAG 578

CP000388_3512: domain 1 of 1, from 864 to 929: score 85.2, E = 8.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla +sHE+RTP+++++g++e+Ll ++l ++q
CP000388_3 864 EKSDFLAIMSHEIRTPMNGVLGMTEVLLS---------SDLKPKQ-- 899

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++r+++ ll+L+n++Ld+s++eag
CP000388_3 900 ----------QHFAQLVYRSGRLLLDLLNNILDFSKLEAG 929

CP000388_3692: domain 1 of 1, from 392 to 457: score 84.9, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHE+RTP+++I+g++++ + ++l++ q
CP000388_3 392 SKSMFLANMSHEIRTPMNGIIGLLDVVMK---------SDLTPTQ-- 427

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+++ +++ l +Lind+Ld+s+ eag
CP000388_3 428 ----------RQHLNKVVYSSQILMSLINDILDFSKVEAG 457

CP000388_4118: domain 1 of 1, from 146 to 211: score 76.5, E = 2.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla+lsHELRTPLt+I+gy+elL + ++ +
CP000388_4 146 SKDRFLAHLSHELRTPLTSILGYTELLMD---------SKIGQSA-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++l+ +++ll+L+n++Ldls+i a
CP000388_4 182 ----------QSELSIVLNNSKHLLSLLNNMLDLSKIAAD 211

CP000388_2796: domain 1 of 1, from 231 to 294: score 75.9, E = 3.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTP++++ g+ el+ + + +
CP000388_2 231 AKSEFLASMSHELRTPMNGLFGMMELAID-----------NPHKS-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+++++++++ll Lind+Ldls+ieag
CP000388_2 265 ----------GEYLKKAKNAGRQLLVLINDVLDLSKIEAG 294

CP000388_1047: domain 1 of 1, from 205 to 272: score 71.7, E = 6.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPLt+I gy+e+L t+ +e +
CP000388_1 205 MRKDFVANVSHELRTPLTVINGYLETLPG--------ATNIPEAFL- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e +++++ r++ Li++lL lsriea
CP000388_1 243 ----------AKAFEEMRSQSTRMQCLIEELLVLSRIEAS 272

CP000388_3882: domain 1 of 1, from 335 to 400: score 69.8, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +lsH++RTP+++I+g+++l+ tels +q
CP000388_3 335 GRTQFMNTLSHQIRTPVNGILGMTDLCMQ---------TELSLKQ-- 370

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i +ae+l++ + dl d++ +e+g
CP000388_3 371 ----------QDYLRKITASAEHLNSVLGDLSDFALLESG 400

CP000388_0216: domain 1 of 1, from 267 to 335: score 66.9, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la+lsH+LRTPL++++gy+e+L ++ + ls ++r
CP000388_0 267 QRRVLLADLSHDLRTPLASLQGYIETLALNG-------ESLSKQDR- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ l+ a+ l +Li+++ +l+ +e g
CP000388_0 306 ----------EHFVDVSLKNAKNLKHLIDQIFELAYLEGG 335

CP000388_3716: domain 1 of 1, from 285 to 350: score 66.7, E = 1.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++sHELRTPL++I g++ +L++ t+l+ eq
CP000388_3 285 DKTKFIATISHELRTPLNGIVGLSRMLRD---------TKLDKEQ-- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ti+ ++ l ++ nd+ d+ r++
CP000388_3 321 ----------FAWVSTIYASGITLGNIFNDIIDIDRMGRD 350

CP000388_1738: domain 1 of 1, from 304 to 370: score 65.9, E = 2.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+l+HELR+PL+ Ir +e+Ll+ eqr
CP000388_1 304 LKDEFLAMLAHELRNPLAPIRNVSEILLN-------------MEQRD 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p L + + +++ r+++++ +L +dlLd sri ++
CP000388_1 338 PKL-------KNIGDILARQVRHMTHLMDDLLDVSRISQN 370

CP000388_1288: domain 1 of 1, from 854 to 920: score 65.2, E = 4.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ +r el+++ + ++ +
CP000388_1 854 RKDEFLATLAHELRNPLAPLRNSMELIRN---------VKTDPAMM- 890

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ t++r++ ++ rLi+dlLd+sri
CP000388_1 891 ----------QTAVATMDRQVAQMVRLIDDLLDISRISKD 920

CP000388_3023: domain 1 of 1, from 159 to 225: score 62.3, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H++RTPL+a ++ya L ++l e r
CP000388_3 159 SLGKMVASLAHQIRTPLSAAMLYAANLSS---------GDLAKESR- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++l+ ++ l+ ++nd+L +++ +++
CP000388_3 196 ----------QRFSDKLLSRLRDLEGQVNDMLLFAKSGNE 225

CP000388_2067: domain 1 of 1, from 220 to 285: score 62.0, E = 3.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl+n+sH LR P++++ g++el+ e + + +
CP000388_2 220 TKNQFLSNMSHKLRSPISGMFGMLELASQ----------ETDIDNQ- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++++++++++ll+L+++lLd+sriea
CP000388_2 256 ----------KAYIQKAQKAGNQLLSLVDELLDISRIEAK 285

CP000388_1517: domain 1 of 1, from 259 to 323: score 61.5, E = 4.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++++a++sHELRTPLt ++g +++L+++ + ++eq
CP000388_1 259 AKNRWFADISHELRTPLTILLGELDALEAGI-------RPFGPEQ-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++ea l rL++dl +ls + g
CP000388_1 297 -------------IESLQQEALLLHRLVDDLYQLSMSDVG 323

CP000388_1020: domain 1 of 1, from 131 to 188: score 60.9, E = 6.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++++l+HE+++PL +Irg+a+lL++ el++ ++
CP000388_1 131 AARELIRGLAHEIKNPLGGIRGAAQLLEK----------ELPSADL- 166

peLRledpeyreyletilreaerllrLindlL<-*
+e++ i+++++rl++L+++lL
CP000388_1 167 ----------KEFTTMIIEQSDRLRNLVDRLL 188

CP000388_0981: domain 1 of 1, from 244 to 312: score 59.9, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++la++sHELR PLt +++++ +++ +++ + + +
CP000388_0 244 GQKRLLADISHELRSPLTRMQLAIGIAQQ-------QEPSSNTKSN- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i++ea+++++++ ++L lsr++++
CP000388_0 283 ----------EQALARIEKEAHQMEHMVAQVLMLSRLDNN 312

CP000388_3385: domain 1 of 1, from 229 to 291: score 59.5, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la+lsHELRTPLt I ++++ + + +++q+
CP000388_3 229 NQRQLLADLSHELRTPLTRIDMAVDFVEQ----------NINPKQA- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+++ ea +++L++d L+l+++ ++
CP000388_3 265 -------------LERLRYEAATMRNLVEDTLTLAWLNNE 291

CP000388_0519: domain 1 of 1, from 784 to 849: score 59.3, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla +sH++ +PL+a ++y+ +L+e ++l+++
CP000388_0 784 SKTRFLALASHDILQPLNAAKLYLGALEE---------AKLNDDA-- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + ++ ++++ ++Li lLd++ri++g
CP000388_0 820 ----------RQTVGKLSNSIQASEALIATLLDIARIDQG 849

CP000388_1858: domain 1 of 1, from 492 to 557: score 57.2, E = 7.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a +++++ L e t ++e
CP000388_1 492 SKTKFLAAVSHDLLQPLNAAQLFTSSLGE---------TLVNAES-- 527

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ ++++ l++Li+ l d+s+++ag
CP000388_1 528 ----------LPLVNSLTNSLDDLENLISTLIDISKLDAG 557

CP000388_2286: domain 1 of 1, from 235 to 297: score 55.9, E = 1.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ ++ a l++ +s++
CP000388_2 235 AQQQLLHDVSHELRAPLARLQVSAALIEQ-----------KSPDS-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i+++ r+++Li+++Ld+s++e+g
CP000388_2 269 -----------RHVKQIHNDCLRIDQLIQQILDYSKLEQG 297

CP000388_0639: domain 1 of 1, from 183 to 248: score 54.4, E = 4.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++n++HELRTPL++++ +++ L++ e++++
CP000388_0 183 REQQFASNAAHELRTPLSVLKINLHNLRK----------EATSDS-- 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y + +++++++++r+ + in++L lsr +
CP000388_0 218 ---------YVQRIDKLHQDTDRMIHAINQILLLSRTNPE 248

CP000388_3552: domain 1 of 1, from 173 to 238: score 53.9, E = 6.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a l H+LRTPL+a+ + ++ L++ + ++
CP000388_3 173 LQEQYIAILGHDLRTPLSALTMGVSFLKD---------QVTDATS-- 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++++a r+ rLi+d++dl+r g
CP000388_3 209 ----------QKILARMDSSATRMKRLISDVMDLTRGKMG 238

CP000388_2237: domain 1 of 1, from 201 to 270: score 51.9, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ fl+++sHELRTP+++Ir +++lL++ l g t ++e+q
CP000388_2 201 REKTFLSYASHELRTPISVIRSNVDLLRR-----LCGQTQMTEKQ-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+r++ +++L + lL ls +++
CP000388_2 241 ----------QITLARIERAGLTMSDLTDTLLWLSHNDEQ 270

CP000388_3886: domain 1 of 1, from 523 to 588: score 51.8, E = 2.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a lsHELRTP++ ++ +e L+ + +++e+
CP000388_3 523 YLQNMSARLSHELRTPVAIVKSSLENLQL---------SQQTDED-- 558

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e+++ ++rl+ ++n++ + +r+e+
CP000388_3 559 ----------AQYIERAQLGIKRLSTILNNMSEATRLEQA 588

CP000388_0225: domain 1 of 1, from 222 to 282: score 46.0, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e+L e q
CP000388_0 222 DRALLTAGISHDLRTPLTRIRLATEMLPE--------------AQ-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i +++e ++++i+++ + r +++
CP000388_0 253 ----------DWLKEGIVNDIEDMNEIIDQFINYVRQDQQ 282

CP000388_2082: domain 1 of 2, from 157 to 232: score 42.9, E = 8.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++e++a+++HE+++PL+a++ ya+++++ l ++ + +++s +q+
CP000388_2 157 TMGEMAAGIAHEINQPLSAVSSYAQACKNLL--QrENSLANASQKQK 201

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l + le+i ++a r + i++l+++ + ++
CP000388_2 202 L----------TDTLEKISNQALRAVEVIRRLREFVKKRNT 232

CP000388_1590: domain 1 of 1, from 242 to 310: score 41.3, E = 2.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sHEL+TPL++I+ ++lL e++ +el++ q
CP000388_1 242 LRHALLRHASHELKTPLASIKEGCSLLTEQV------VGELNDRQ-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + + ++++rl+ Li +lLd+ + ++
CP000388_1 281 ----------MEVMSLLNSSTDRLNTLIMQLLDYNLLLQQ 310

CP000388_1970: domain 1 of 1, from 775 to 840: score 40.4, E = 4.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++ H+L +P +a +++a +L+ + ++ ++
CP000388_1 775 SKTKFLAAAGHDLMQPFNAASLFAAMLKQ----------KSPPGEM- 810

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + + +++ ++L++ lLd++r+e+g
CP000388_1 811 ----------AEMSSNLVDSLSNAESLLSMLLDMTRLESG 840

CP000388_1823: domain 1 of 1, from 824 to 891: score 36.0, E = 7.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+sHE+RTPLt ++ ++ l+ d+++ + +
CP000388_1 824 LKERFFNNVSHEFRTPLTLTIAPLQDVLN--------DHPALDSSL- 861

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++t+lr a+ +l+L+ ++Ld+ r+ g
CP000388_1 862 ----------ALPVKTALRNAKNMLQLVGNILDINRLNIG 891

CP000388_3515: domain 1 of 1, from 296 to 364: score 35.5, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L+ PL+aIr ++ ++e+ l+ e
CP000388_3 296 DLDDFTHIASHDLKAPLNAIRRLLGWIEEDCH------NILPTES-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ + + a+r+ +L++dlL +++i+
CP000388_3 335 ----------QENLRLVVNRANRMYQLLDDLLSFAKIGRK 364

CP000388_4120: domain 1 of 1, from 254 to 322: score 33.5, E = 3.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL I+++++ L + ++ ++ +e
CP000388_4 254 ELEDFAFVASHDLQEPLRKIQAFSDRLTT-------IYKDQLDERG- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++++ +a r++ LindlL++sri +
CP000388_4 293 ----------VDYIKRMTTAAFRMSTLINDLLEFSRITTR 322

CP000388_1522: domain 1 of 2, from 247 to 291: score 31.3, E = 1.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE+++P+ Ir ++e+L+e+l ++
CP000388_1 247 SLGQLAAGVAHEINNPVGFIRSNLEMLEEYL-------QD------- 279

peLRledpeyreyletilrea<-*
y+++ il+++
CP000388_1 280 ---------YQQLHALILKQI 291

CP000388_0420: domain 1 of 1, from 574 to 641: score 30.4, E = 3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL I+ + ++ te++ +r
CP000388_0 574 ELERFAFVASHDLQEPLRKIQSFGGRIQQ---------TEATLSDRG 611

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ++ ++aer+++Li +L +sri
CP000388_0 612 ----------HDYLTKMMNSAERMQALIKGVLSFSRIHRS 641

CP000388_3541: domain 1 of 1, from 198 to 253: score 28.8, E = 8.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+ +++HE+RTPL+ +++++e+ ++ ++e+
CP000388_3 198 SQRELSGAVAHEFRTPLARLKFALEA--Q---------PASNSEK-- 231

peLRledpeyreyletilreaerllrLindlLdls<-*
+ + ++e l+rL++++Ld++
CP000388_3 232 -------------WNAMSLDVEELERLVQEMLDYA 253


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 4 0|=
-13 39 3|*==
-12 157 97|======*====
-11 385 507|========================== *
-10 736 941|================================================== *
-9 857 972|==========================================================*
-8 727 727|================================================*
-7 542 458|==============================*======
-6 331 263|=================*=====
-5 204 144|=========*====
-4 104 77|=====*=
-3 69 40|==*==
-2 28 21|=*
-1 22 11|*=
0 14 5|*
1 6 3|*
2 2 1|*
3 1 0|=
4 2 0|=
5 0 0|
6 1 0|=
7 0 0|
8 1 0|=
9 1 0|=
10 0 0|
11 1 0|=
12 0 0|
13 1 0|=
14 0 0|
15 1 0|=
16 0 0|
17 1 0|=
18 0 0|
19 2 0|=
20 0 0|
> 21 42 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 232.0145
P(chi-square) = 1.438e-312

Total sequences searched: 4281

Whole sequence top hits:
tophits_s report:
Total hits: 40
Satisfying E cutoff: 40
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 40
Satisfying E cutoff: 40
Total memory: 37K


Acknowledgements:

This research is funded by:

Developed by: